Wall clock time and date at job start Tue Mar 31 2020 06:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47496 * 2 1 4 4 C 1.34773 * 120.00321 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99890 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00128 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47058 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.47382 * 179.97438 * 7 6 4 9 9 O 1.21283 * 119.99658 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00452 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63302 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 233.67613 * 11 10 8 13 13 C 1.53035 * 109.31327 * 305.29292 * 12 11 10 14 14 C 1.50709 * 109.45964 * 181.37529 * 13 12 11 15 15 H 1.07997 * 119.99916 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99864 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00107 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99894 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47199 * 90.00447 * 18 16 14 20 20 H 1.48500 * 109.47216 * 210.00118 * 18 16 14 21 21 H 1.48493 * 109.47310 * 329.99864 * 18 16 14 22 22 C 1.53038 * 109.54175 * 61.36680 * 13 12 11 23 23 C 1.47207 * 120.81153 * 0.14103 * 10 8 7 24 24 H 1.08998 * 109.47378 * 300.00661 * 1 2 3 25 25 H 1.09008 * 109.46760 * 60.00313 * 1 2 3 26 26 H 1.08997 * 109.47420 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47378 * 239.99339 * 2 1 3 28 28 H 1.09008 * 109.46760 * 119.99687 * 2 1 3 29 29 H 0.97001 * 119.99803 * 359.97438 * 3 2 1 30 30 H 1.08998 * 109.47193 * 60.00014 * 6 4 3 31 31 H 1.09004 * 109.47012 * 299.99732 * 6 4 3 32 32 H 1.08998 * 109.47350 * 59.99812 * 7 6 4 33 33 H 1.09003 * 109.47457 * 299.99824 * 7 6 4 34 34 H 1.09002 * 109.58861 * 113.81616 * 11 10 8 35 35 H 1.08996 * 109.58519 * 353.53507 * 11 10 8 36 36 H 1.09003 * 109.49975 * 65.24379 * 12 11 10 37 37 H 1.09000 * 109.49553 * 185.30642 * 12 11 10 38 38 H 1.09004 * 109.45942 * 301.34050 * 13 12 11 39 39 H 0.97004 * 120.00396 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.49557 * 58.58503 * 22 13 12 41 41 H 1.08996 * 109.50003 * 178.68400 * 22 13 12 42 42 H 1.08996 * 109.53610 * 6.53712 * 23 10 8 43 43 H 1.09002 * 109.68003 * 246.23180 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1316 0.7055 0.0005 6 6 3.8459 3.0482 -0.0001 7 6 5.3758 3.0481 0.0001 8 6 5.8783 4.4689 -0.0012 9 8 5.0902 5.3908 -0.0016 10 7 7.2033 4.7152 -0.0007 11 6 7.7084 6.0949 -0.0014 12 6 8.6856 6.2648 -1.1688 13 6 9.7790 5.1985 -1.0729 14 6 10.7612 5.3836 -2.2009 15 1 10.6195 6.1816 -2.9147 16 6 11.8406 4.5344 -2.3214 17 7 12.0134 3.5630 -1.4518 18 14 13.0576 4.7635 -3.7199 19 1 14.1430 5.6796 -3.2865 20 1 13.6387 3.4482 -4.0909 21 1 12.3587 5.3446 -4.8941 22 6 9.1477 3.8078 -1.1701 23 6 8.1757 3.6099 -0.0022 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.3881 2.1184 -0.0004 30 1 3.4821 3.5626 0.8894 31 1 3.4830 3.5615 -0.8906 32 1 5.7392 2.5339 -0.8896 33 1 5.7391 2.5347 0.8903 34 1 8.2230 6.2961 0.9382 35 1 6.8758 6.7887 -0.1177 36 1 8.1496 6.1526 -2.1113 37 1 9.1379 7.2555 -1.1233 38 1 10.2985 5.2957 -0.1196 39 1 12.7731 2.9657 -1.5364 40 1 8.6073 3.7186 -2.1126 41 1 9.9293 3.0494 -1.1253 42 1 7.6502 2.6623 -0.1205 43 1 8.7287 3.6062 0.9371 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611675324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:08 Heat of formation + Delta-G solvation = -116.943144 kcal Electronic energy + Delta-G solvation = -22239.903411 eV Core-core repulsion = 18897.165166 eV Total energy + Delta-G solvation = -3342.738245 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30409 -40.52671 -38.42487 -36.31798 -35.31452 -34.12342 -32.92715 -31.76136 -31.23387 -28.25976 -26.64377 -24.57567 -23.91471 -23.31979 -21.69435 -21.12079 -19.70448 -18.78936 -18.25689 -17.44148 -17.17318 -16.83148 -16.58968 -16.44403 -16.27927 -15.29425 -14.96115 -14.89272 -14.61540 -14.46663 -14.20184 -14.06041 -13.55798 -13.40396 -13.29866 -13.10743 -12.83737 -12.72401 -12.67531 -12.45177 -12.36777 -12.19110 -12.12020 -11.92660 -11.47531 -11.00170 -10.98130 -10.93342 -10.66039 -10.39181 -10.09040 -9.53809 -8.07785 -6.21085 1.41094 1.43088 1.52019 1.61799 1.62884 1.97205 2.36714 2.44047 3.18798 3.49920 3.80912 4.03543 4.09562 4.16803 4.22053 4.24108 4.29767 4.39781 4.49061 4.53534 4.58629 4.62592 4.76369 4.84469 4.89169 4.94642 4.97863 4.99965 5.07093 5.20194 5.25402 5.27554 5.44008 5.49287 5.55480 5.65330 5.99004 6.13586 6.39320 6.50726 6.54831 6.88789 7.16157 7.24917 7.46697 8.95667 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026522 B = 0.003166 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.475066 B = 8840.682367 C = 9512.823005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.108 3.892 3 N -0.721 5.721 4 C 0.513 3.487 5 O -0.583 6.583 6 C -0.115 4.115 7 C -0.119 4.119 8 C 0.514 3.486 9 O -0.582 6.582 10 N -0.605 5.605 11 C 0.117 3.883 12 C -0.113 4.113 13 C 0.044 3.956 14 C -0.534 4.534 15 H 0.048 0.952 16 C 0.016 3.984 17 N -0.912 5.912 18 Si 0.949 3.051 19 H -0.277 1.277 20 H -0.283 1.283 21 H -0.273 1.273 22 C -0.116 4.116 23 C 0.113 3.887 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.417 0.583 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.064 0.936 38 H 0.004 0.996 39 H 0.261 0.739 40 H 0.028 0.972 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.040 -4.595 4.688 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.015 4.015 3 N -0.374 5.374 4 C 0.300 3.700 5 O -0.464 6.464 6 C -0.155 4.155 7 C -0.159 4.159 8 C 0.304 3.696 9 O -0.464 6.464 10 N -0.337 5.337 11 C -0.006 4.006 12 C -0.152 4.152 13 C 0.026 3.974 14 C -0.572 4.572 15 H 0.066 0.934 16 C -0.183 4.183 17 N -0.552 5.552 18 Si 0.775 3.225 19 H -0.202 1.202 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.155 4.155 23 C -0.009 4.009 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.254 0.746 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.022 0.978 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.097 0.903 42 H 0.113 0.887 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.784 -4.935 4.729 21.880 hybrid contribution 1.003 0.319 -0.837 1.345 sum -19.781 -4.616 3.892 20.682 Atomic orbital electron populations 1.21956 0.91849 1.04159 1.03344 1.21388 0.96266 0.82449 1.01414 1.46009 1.06609 1.09962 1.74805 1.20912 0.82742 0.91493 0.74825 1.90710 1.56512 1.47793 1.51339 1.21310 0.94523 0.92822 1.06820 1.21348 0.96334 0.92311 1.05906 1.20970 0.81499 0.92111 0.75053 1.90613 1.55314 1.47582 1.52907 1.48350 1.05796 1.08055 1.71481 1.21586 0.97385 0.82844 0.98774 1.21849 0.96520 0.99944 0.96847 1.18623 0.91846 0.91627 0.95349 1.21552 1.09119 1.14012 1.12538 0.93395 1.25652 0.99299 0.95065 0.98254 1.69952 1.30128 1.18128 1.36987 0.85696 0.79369 0.77392 0.80020 1.20245 1.20869 1.19766 1.21797 0.97084 1.01464 0.95109 1.21956 0.90433 0.88941 0.99531 0.91034 0.91194 0.89849 0.92735 0.92508 0.74620 0.86774 0.87316 0.88507 0.87641 0.91241 0.89778 0.93970 0.91708 0.97823 0.92939 0.95354 0.90346 0.88677 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.03 71.98 0.72 -0.38 16 2 C 0.11 1.53 6.39 86.38 0.55 2.08 16 3 N -0.72 -10.86 5.56 -463.06 -2.57 -13.43 16 4 C 0.51 11.38 7.83 87.66 0.69 12.07 16 5 O -0.58 -18.00 15.98 -3.04 -0.05 -18.05 16 6 C -0.11 -2.37 4.99 29.85 0.15 -2.22 16 7 C -0.12 -3.09 3.34 29.85 0.10 -2.99 16 8 C 0.51 16.57 7.70 87.66 0.68 17.25 16 9 O -0.58 -20.98 15.39 -3.04 -0.05 -21.02 16 10 N -0.61 -21.05 2.98 -818.12 -2.44 -23.49 16 11 C 0.12 4.15 6.42 86.36 0.55 4.71 16 12 C -0.11 -4.66 5.30 30.67 0.16 -4.49 16 13 C 0.04 2.14 2.06 -11.51 -0.02 2.11 16 14 C -0.53 -29.02 8.56 25.60 0.22 -28.80 16 15 H 0.05 2.60 7.74 -2.91 -0.02 2.57 16 16 C 0.02 0.88 5.30 84.65 0.45 1.33 16 17 N -0.91 -51.05 11.31 21.45 0.24 -50.81 16 18 Si 0.95 43.25 29.54 68.60 2.03 45.28 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 C -0.12 -5.22 5.16 30.68 0.16 -5.06 16 23 C 0.11 4.03 6.35 86.32 0.55 4.58 16 24 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 26 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.42 3.68 8.47 -92.71 -0.79 2.90 16 30 H 0.11 2.06 8.10 -2.39 -0.02 2.04 16 31 H 0.11 2.10 8.10 -2.39 -0.02 2.08 16 32 H 0.10 2.64 7.65 -2.39 -0.02 2.63 16 33 H 0.11 2.62 7.91 -2.39 -0.02 2.61 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.08 2.92 7.00 -2.39 -0.02 2.91 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 40 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.08 3.97 6.03 -2.39 -0.01 3.96 16 42 H 0.10 2.93 5.97 -2.39 -0.01 2.91 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -67.51 346.38 2.32 -65.19 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.21 Total: 16.14 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 4.95 Total: 0.18 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -4.77 Total: -87.73 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.10 Total: -39.07 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -67.51 2.32 -65.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611675324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.749 kcal (2) G-P(sol) polarization free energy of solvation -67.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds