Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20761 * 120.00147 * 2 1 4 4 C 1.50698 * 120.00215 * 180.02562 * 2 1 3 5 5 C 1.52992 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47074 * 120.88261 * 359.72571 * 9 7 6 11 11 C 1.53695 * 108.27576 * 128.74910 * 10 9 7 12 12 N 1.46904 * 109.25420 * 54.08473 * 11 10 9 13 13 C 1.46897 * 110.99901 * 172.60509 * 12 11 10 14 14 C 1.50703 * 109.47428 * 294.29982 * 13 12 11 15 15 H 1.08006 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00045 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 120.00290 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46960 * 89.99695 * 18 16 14 20 20 H 1.48498 * 109.47151 * 209.99981 * 18 16 14 21 21 H 1.48499 * 109.46789 * 329.99889 * 18 16 14 22 22 C 1.46897 * 111.26792 * 296.75440 * 12 11 10 23 23 C 1.47075 * 120.87669 * 180.02562 * 9 7 6 24 24 H 1.09004 * 109.46748 * 270.00049 * 1 2 3 25 25 H 1.09003 * 109.46894 * 29.99630 * 1 2 3 26 26 H 1.08997 * 109.47052 * 149.99917 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99621 * 4 2 1 28 28 H 1.09001 * 109.46665 * 299.99880 * 4 2 1 29 29 H 1.09002 * 109.47103 * 59.99616 * 5 4 2 30 30 H 1.08998 * 109.46862 * 300.00428 * 5 4 2 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 33 33 H 1.08994 * 109.63016 * 248.52290 * 10 9 7 34 34 H 1.09001 * 109.62513 * 9.10199 * 10 9 7 35 35 H 1.08997 * 109.65385 * 294.08176 * 11 10 9 36 36 H 1.08999 * 109.42153 * 173.94686 * 11 10 9 37 37 H 1.08994 * 109.47420 * 54.30050 * 13 12 11 38 38 H 1.08997 * 109.47407 * 174.29955 * 13 12 11 39 39 H 0.96998 * 119.99927 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.49120 * 303.14081 * 22 12 11 41 41 H 1.09003 * 109.48945 * 183.06528 * 22 12 11 42 42 H 1.09003 * 109.63301 * 350.89825 * 23 9 7 43 43 H 1.09003 * 109.62726 * 111.48107 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 6 3.7648 -1.0256 -0.0011 6 6 4.5298 -2.3505 -0.0011 7 6 6.0114 -2.0752 -0.0022 8 8 6.4156 -0.9317 -0.0025 9 7 6.8872 -3.0996 -0.0018 10 6 6.4184 -4.4936 0.0057 11 6 7.1257 -5.2462 -1.1325 12 7 8.5786 -5.0794 -0.9940 13 6 9.2995 -5.9240 -1.9557 14 6 9.0647 -7.3753 -1.6245 15 1 8.4418 -7.6435 -0.7839 16 6 9.6441 -8.3608 -2.3952 17 7 9.4387 -9.6274 -2.1064 18 14 10.7208 -7.8972 -3.8496 19 1 12.1301 -7.7662 -3.4002 20 1 10.6290 -8.9529 -4.8899 21 1 10.2592 -6.6038 -4.4147 22 6 8.9690 -3.6703 -1.1348 23 6 8.3371 -2.8531 -0.0024 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.9972 -1.8763 -0.8908 28 1 1.9972 -1.8770 0.8892 29 1 4.0284 -0.4541 0.8889 30 1 4.0277 -0.4537 -0.8910 31 1 4.2661 -2.9223 -0.8908 32 1 4.2667 -2.9219 0.8892 33 1 6.6619 -4.9567 0.9619 34 1 5.3401 -4.5181 -0.1520 35 1 6.8034 -4.8447 -2.0932 36 1 6.8743 -6.3054 -1.0778 37 1 8.9375 -5.7181 -2.9629 38 1 10.3663 -5.7071 -1.9017 39 1 9.8467 -10.3207 -2.6484 40 1 8.6211 -3.2907 -2.0956 41 1 10.0545 -3.5866 -1.0818 42 1 8.5282 -1.7924 -0.1655 43 1 8.7614 -3.1618 0.9531 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000636339610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = -74.584358 kcal Electronic energy + Delta-G solvation = -22066.965768 eV Core-core repulsion = 18726.064337 eV Total energy + Delta-G solvation = -3340.901430 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16003 -39.62622 -37.67758 -34.52335 -34.48731 -32.44491 -31.30908 -30.71637 -28.98056 -27.98429 -25.62597 -23.55701 -22.72935 -21.49048 -20.38859 -19.88588 -18.60215 -17.09311 -16.85642 -16.38568 -16.19686 -15.48472 -15.37801 -15.10445 -14.68734 -14.54594 -14.33889 -13.97652 -13.62444 -13.42644 -13.04257 -12.87466 -12.52268 -12.44777 -12.34865 -12.07245 -12.00821 -11.62735 -11.55998 -11.20061 -11.11508 -10.96887 -10.81344 -10.61423 -10.36235 -9.98399 -9.94395 -9.61038 -9.38342 -8.64158 -8.51337 -7.50208 -6.12800 -4.10899 1.67745 2.71078 3.06738 3.23658 3.31501 3.33274 3.74273 4.35557 4.41276 4.58987 4.64782 4.71583 4.82742 4.91701 4.98438 5.15787 5.18325 5.19243 5.26579 5.31107 5.33878 5.42016 5.46390 5.55443 5.64844 5.69088 5.79769 5.91314 5.96531 6.14780 6.15865 6.33080 6.38886 6.59517 6.77104 6.88389 7.22955 7.48666 7.51413 7.78310 7.91375 8.26134 8.55839 8.93915 9.48810 10.99950 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030263 B = 0.002941 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.014959 B = 9516.697579 C = 9963.921204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.351 3.649 3 O -0.455 6.455 4 C -0.174 4.174 5 C -0.096 4.096 6 C -0.140 4.140 7 C 0.512 3.488 8 O -0.550 6.550 9 N -0.611 5.611 10 C 0.109 3.891 11 C 0.049 3.951 12 N -0.527 5.527 13 C 0.162 3.838 14 C -0.512 4.512 15 H 0.082 0.918 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.874 3.126 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.268 1.268 22 C 0.038 3.962 23 C 0.118 3.882 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.025 0.975 36 H 0.103 0.897 37 H -0.011 1.011 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.027 0.973 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.793 13.422 4.233 21.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.226 3.774 3 O -0.328 6.328 4 C -0.211 4.211 5 C -0.134 4.134 6 C -0.180 4.180 7 C 0.300 3.700 8 O -0.428 6.428 9 N -0.344 5.344 10 C -0.014 4.014 11 C -0.080 4.080 12 N -0.252 5.252 13 C 0.036 3.964 14 C -0.550 4.550 15 H 0.100 0.900 16 C -0.132 4.132 17 N -0.537 5.537 18 Si 0.702 3.298 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.091 4.091 23 C -0.005 4.005 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.044 0.956 36 H 0.121 0.879 37 H 0.006 0.994 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.071 14.240 4.634 21.246 hybrid contribution 0.391 -0.010 -1.672 1.717 sum -14.680 14.230 2.962 20.659 Atomic orbital electron populations 1.22310 0.94605 1.04746 1.04605 1.24661 0.91892 0.90452 0.70392 1.90450 1.71955 1.35231 1.35205 1.22194 0.96627 0.97511 1.04815 1.21149 0.91551 0.96017 1.04716 1.21703 0.92044 0.99838 1.04400 1.20648 0.88699 0.84690 0.75966 1.90683 1.80268 1.21203 1.50632 1.48282 1.06873 1.06663 1.72612 1.22109 0.98364 0.80199 1.00695 1.22457 0.88729 1.01836 0.94985 1.61888 1.05096 1.04522 1.53648 1.20179 0.93532 0.93784 0.88882 1.20998 1.31475 0.87618 1.14908 0.90048 1.24892 0.96173 0.94872 0.97300 1.69887 1.44708 0.99277 1.39868 0.86873 0.81497 0.78461 0.82993 1.20085 1.21161 1.19335 1.22465 1.00323 0.90050 0.96255 1.21721 0.79010 1.00329 0.99410 0.88735 0.89852 0.89634 0.88203 0.88197 0.90699 0.90711 0.88779 0.88779 0.90369 0.89956 0.95638 0.87897 0.99360 0.95609 0.92582 0.95500 0.90070 0.89373 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.96 10.25 36.01 0.37 -0.59 16 2 C 0.35 2.85 7.27 -29.03 -0.21 2.64 16 3 O -0.46 -5.86 16.72 6.00 0.10 -5.76 16 4 C -0.17 -1.13 5.62 -27.89 -0.16 -1.28 16 5 C -0.10 -0.99 3.79 -26.74 -0.10 -1.09 16 6 C -0.14 -1.36 4.06 -27.88 -0.11 -1.47 16 7 C 0.51 7.31 7.71 -10.98 -0.08 7.23 16 8 O -0.55 -9.84 15.43 5.56 0.09 -9.75 16 9 N -0.61 -8.81 3.00 -172.16 -0.52 -9.32 16 10 C 0.11 1.45 6.53 -3.37 -0.02 1.43 16 11 C 0.05 0.84 5.47 -3.46 -0.02 0.82 16 12 N -0.53 -10.40 4.62 -235.44 -1.09 -11.49 16 13 C 0.16 3.78 3.79 -4.98 -0.02 3.76 16 14 C -0.51 -13.87 8.96 -34.44 -0.31 -14.17 16 15 H 0.08 2.37 7.37 -52.48 -0.39 1.98 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -26.64 13.96 55.43 0.77 -25.87 16 18 Si 0.87 20.96 27.47 -169.99 -4.67 16.29 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 22 C 0.04 0.65 5.62 -3.68 -0.02 0.63 16 23 C 0.12 1.79 6.60 -3.58 -0.02 1.76 16 24 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.08 0.22 8.12 -51.93 -0.42 -0.20 16 27 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 30 H 0.07 0.93 8.06 -51.93 -0.42 0.51 16 31 H 0.09 0.77 7.67 -51.93 -0.40 0.37 16 32 H 0.09 0.71 7.99 -51.93 -0.41 0.30 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.82 6.02 -51.93 -0.31 0.50 16 35 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 1.94 6.67 -51.93 -0.35 1.60 16 37 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 38 H 0.03 0.61 7.40 -51.93 -0.38 0.22 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 42 H 0.09 1.34 7.06 -51.93 -0.37 0.98 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -34.15 346.14 -8.11 -42.26 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -7.20 Total: -3.08 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.81 Total: 1.52 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.83 Total: -46.69 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.19 Total: -15.51 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.15 -8.11 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000636339610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.328 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds