Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.20761 * 120.00147 * 2 1 4 4 C 1.50698 * 120.00215 * 180.02562 * 2 1 3 5 5 C 1.52992 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 2 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47074 * 120.88261 * 359.72571 * 9 7 6 11 11 C 1.53695 * 108.27576 * 128.74910 * 10 9 7 12 12 N 1.46904 * 109.25420 * 54.08473 * 11 10 9 13 13 C 1.46897 * 110.99901 * 172.60509 * 12 11 10 14 14 C 1.50703 * 109.47428 * 294.29982 * 13 12 11 15 15 H 1.08006 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31522 * 120.00045 * 180.02562 * 16 14 13 18 18 Si 1.86806 * 120.00290 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.46960 * 89.99695 * 18 16 14 20 20 H 1.48498 * 109.47151 * 209.99981 * 18 16 14 21 21 H 1.48499 * 109.46789 * 329.99889 * 18 16 14 22 22 C 1.46897 * 111.26792 * 296.75440 * 12 11 10 23 23 C 1.47075 * 120.87669 * 180.02562 * 9 7 6 24 24 H 1.09004 * 109.46748 * 270.00049 * 1 2 3 25 25 H 1.09003 * 109.46894 * 29.99630 * 1 2 3 26 26 H 1.08997 * 109.47052 * 149.99917 * 1 2 3 27 27 H 1.09002 * 109.47210 * 59.99621 * 4 2 1 28 28 H 1.09001 * 109.46665 * 299.99880 * 4 2 1 29 29 H 1.09002 * 109.47103 * 59.99616 * 5 4 2 30 30 H 1.08998 * 109.46862 * 300.00428 * 5 4 2 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 33 33 H 1.08994 * 109.63016 * 248.52290 * 10 9 7 34 34 H 1.09001 * 109.62513 * 9.10199 * 10 9 7 35 35 H 1.08997 * 109.65385 * 294.08176 * 11 10 9 36 36 H 1.08999 * 109.42153 * 173.94686 * 11 10 9 37 37 H 1.08994 * 109.47420 * 54.30050 * 13 12 11 38 38 H 1.08997 * 109.47407 * 174.29955 * 13 12 11 39 39 H 0.96998 * 119.99927 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.49120 * 303.14081 * 22 12 11 41 41 H 1.09003 * 109.48945 * 183.06528 * 22 12 11 42 42 H 1.09003 * 109.63301 * 350.89825 * 23 9 7 43 43 H 1.09003 * 109.62726 * 111.48107 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 6 3.7648 -1.0256 -0.0011 6 6 4.5298 -2.3505 -0.0011 7 6 6.0114 -2.0752 -0.0022 8 8 6.4156 -0.9317 -0.0025 9 7 6.8872 -3.0996 -0.0018 10 6 6.4184 -4.4936 0.0057 11 6 7.1257 -5.2462 -1.1325 12 7 8.5786 -5.0794 -0.9940 13 6 9.2995 -5.9240 -1.9557 14 6 9.0647 -7.3753 -1.6245 15 1 8.4418 -7.6435 -0.7839 16 6 9.6441 -8.3608 -2.3952 17 7 9.4387 -9.6274 -2.1064 18 14 10.7208 -7.8972 -3.8496 19 1 12.1301 -7.7662 -3.4002 20 1 10.6290 -8.9529 -4.8899 21 1 10.2592 -6.6038 -4.4147 22 6 8.9690 -3.6703 -1.1348 23 6 8.3371 -2.8531 -0.0024 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8900 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.9972 -1.8763 -0.8908 28 1 1.9972 -1.8770 0.8892 29 1 4.0284 -0.4541 0.8889 30 1 4.0277 -0.4537 -0.8910 31 1 4.2661 -2.9223 -0.8908 32 1 4.2667 -2.9219 0.8892 33 1 6.6619 -4.9567 0.9619 34 1 5.3401 -4.5181 -0.1520 35 1 6.8034 -4.8447 -2.0932 36 1 6.8743 -6.3054 -1.0778 37 1 8.9375 -5.7181 -2.9629 38 1 10.3663 -5.7071 -1.9017 39 1 9.8467 -10.3207 -2.6484 40 1 8.6211 -3.2907 -2.0956 41 1 10.0545 -3.5866 -1.0818 42 1 8.5282 -1.7924 -0.1655 43 1 8.7614 -3.1618 0.9531 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000636339610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = -98.992591 kcal Electronic energy + Delta-G solvation = -22068.024188 eV Core-core repulsion = 18726.064337 eV Total energy + Delta-G solvation = -3341.959850 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.26977 -40.39444 -39.04607 -35.97413 -35.32440 -34.41084 -32.36708 -31.50059 -30.52035 -28.91232 -27.09144 -24.76729 -23.91387 -22.98647 -21.70710 -20.50865 -19.75380 -18.93510 -18.17898 -17.15730 -17.11750 -16.55451 -16.38256 -16.24729 -16.04984 -15.81775 -15.66159 -15.18523 -15.04341 -14.53218 -14.46254 -14.15597 -13.69414 -13.38615 -13.13597 -13.05290 -12.88646 -12.73565 -12.71102 -12.55935 -12.42449 -12.23572 -12.17233 -11.93117 -11.84845 -11.71132 -11.41330 -10.88428 -10.77363 -10.50129 -9.76567 -9.06822 -8.27678 -6.30415 1.09192 1.35180 1.36537 1.45925 1.61896 1.98099 2.34180 3.04857 3.14753 3.19431 3.53329 3.93230 4.02574 4.06397 4.09958 4.11934 4.22533 4.29534 4.41792 4.44148 4.53404 4.59620 4.71436 4.72529 4.74503 4.80783 4.81662 4.87283 4.90736 4.93119 5.06394 5.13601 5.17683 5.27771 5.35794 5.47154 5.53022 5.92900 6.29643 6.43973 6.59900 6.66852 6.75752 7.15265 7.33294 8.88072 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030263 B = 0.002941 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.014959 B = 9516.697579 C = 9963.921204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.348 3.652 3 O -0.517 6.517 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.132 4.132 7 C 0.505 3.495 8 O -0.593 6.593 9 N -0.614 5.614 10 C 0.120 3.880 11 C 0.048 3.952 12 N -0.540 5.540 13 C 0.171 3.829 14 C -0.512 4.512 15 H 0.048 0.952 16 C 0.012 3.988 17 N -0.944 5.944 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.282 1.282 21 H -0.256 1.256 22 C 0.043 3.957 23 C 0.122 3.878 24 H 0.111 0.889 25 H 0.074 0.926 26 H 0.114 0.886 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.046 0.954 30 H 0.041 0.959 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.126 0.874 35 H 0.025 0.975 36 H 0.081 0.919 37 H -0.016 1.016 38 H 0.027 0.973 39 H 0.267 0.733 40 H 0.022 0.978 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.415 13.364 4.008 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.228 3.772 3 O -0.395 6.395 4 C -0.205 4.205 5 C -0.132 4.132 6 C -0.171 4.171 7 C 0.296 3.704 8 O -0.474 6.474 9 N -0.346 5.346 10 C -0.002 4.002 11 C -0.081 4.081 12 N -0.265 5.265 13 C 0.044 3.956 14 C -0.550 4.550 15 H 0.067 0.933 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.765 3.235 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.180 1.180 22 C -0.086 4.086 23 C -0.001 4.001 24 H 0.129 0.871 25 H 0.093 0.907 26 H 0.133 0.867 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.144 0.856 35 H 0.043 0.957 36 H 0.099 0.901 37 H 0.002 0.998 38 H 0.045 0.955 39 H 0.076 0.924 40 H 0.040 0.960 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.723 14.171 4.420 22.361 hybrid contribution 0.854 0.000 -1.534 1.756 sum -15.869 14.171 2.886 21.471 Atomic orbital electron populations 1.22325 0.91712 1.05786 1.05890 1.25399 0.93679 0.90181 0.67939 1.90448 1.73357 1.37307 1.38416 1.22252 0.93273 0.97209 1.07722 1.21052 0.94626 0.95704 1.01825 1.21786 0.88111 1.00033 1.07144 1.21525 0.90534 0.83803 0.74544 1.90671 1.81267 1.22997 1.52477 1.48390 1.06549 1.07272 1.72422 1.22131 1.00277 0.78812 0.99017 1.22480 0.87583 1.01248 0.96807 1.61815 1.06468 1.05682 1.52506 1.19938 0.94047 0.92214 0.89381 1.21205 1.30345 0.89851 1.13618 0.93350 1.25737 0.97758 0.94691 1.00349 1.70025 1.46369 1.00503 1.41536 0.85816 0.79717 0.78595 0.79391 1.19256 1.20805 1.18028 1.22480 1.00994 0.88397 0.96740 1.21596 0.79962 0.99714 0.98833 0.87127 0.90686 0.86717 0.85239 0.84868 0.93531 0.93976 0.86132 0.85389 0.90073 0.85599 0.95695 0.90101 0.99805 0.95497 0.92434 0.95992 0.89417 0.89653 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.32 10.25 71.24 0.73 -0.59 16 2 C 0.35 5.15 7.27 29.10 0.21 5.36 16 3 O -0.52 -13.74 16.72 -1.45 -0.02 -13.76 16 4 C -0.17 -1.61 5.62 29.84 0.17 -1.44 16 5 C -0.09 -1.80 3.79 30.59 0.12 -1.68 16 6 C -0.13 -2.11 4.06 29.85 0.12 -1.99 16 7 C 0.51 13.60 7.71 87.66 0.68 14.27 16 8 O -0.59 -21.27 15.43 -3.03 -0.05 -21.32 16 9 N -0.61 -16.48 3.00 -816.99 -2.45 -18.93 16 10 C 0.12 2.84 6.53 86.50 0.57 3.41 16 11 C 0.05 1.58 5.47 86.54 0.47 2.06 16 12 N -0.54 -20.93 4.62 -898.81 -4.15 -25.09 16 13 C 0.17 7.89 3.79 85.56 0.32 8.21 16 14 C -0.51 -28.06 8.96 25.60 0.23 -27.83 16 15 H 0.05 2.90 7.37 -2.91 -0.02 2.88 16 16 C 0.01 0.70 5.47 84.65 0.46 1.16 16 17 N -0.94 -56.83 13.96 21.45 0.30 -56.53 16 18 Si 0.94 42.93 27.47 68.60 1.88 44.81 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.26 -11.08 6.54 99.48 0.65 -10.43 16 22 C 0.04 1.40 5.62 86.40 0.49 1.89 16 23 C 0.12 3.57 6.60 86.36 0.57 4.14 16 24 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 26 H 0.11 0.10 8.12 -2.39 -0.02 0.09 16 27 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.05 1.14 8.06 -2.39 -0.02 1.12 16 30 H 0.04 1.06 8.06 -2.39 -0.02 1.04 16 31 H 0.12 1.38 7.67 -2.39 -0.02 1.36 16 32 H 0.13 1.26 7.99 -2.39 -0.02 1.24 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.13 1.90 6.02 -2.39 -0.01 1.88 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 3.05 6.67 -2.39 -0.02 3.03 16 37 H -0.02 -0.74 7.18 -2.39 -0.02 -0.75 16 38 H 0.03 1.23 7.40 -2.39 -0.02 1.22 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.09 2.72 7.99 -2.39 -0.02 2.70 16 42 H 0.09 2.57 7.06 -2.39 -0.02 2.55 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -78.60 346.14 1.56 -77.04 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 0.92 Total: 6.80 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 5.13 Total: 6.97 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -6.31 Total: -100.55 kcal Atomic # 8 Polarization: -35.01 SS G_CDS: -0.07 Total: -35.08 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal Total: -78.60 1.56 -77.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000636339610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.953 kcal (2) G-P(sol) polarization free energy of solvation -78.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds