Wall clock time and date at job start Tue Mar 31 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21277 * 120.00256 * 2 1 4 4 N 1.34783 * 120.00086 * 179.72558 * 2 1 3 5 5 C 1.46924 * 120.63353 * 175.23704 * 4 2 1 6 6 C 1.52767 * 109.00768 * 233.58414 * 5 4 2 7 7 C 1.53032 * 109.38248 * 305.58879 * 6 5 4 8 8 C 1.50700 * 109.45957 * 181.26168 * 7 6 5 9 9 O 1.21287 * 119.99788 * 254.62573 * 8 7 6 10 10 N 1.34771 * 120.00128 * 74.63092 * 8 7 6 11 11 C 1.46502 * 120.00189 * 174.16925 * 10 8 7 12 12 C 1.46507 * 119.99975 * 354.17251 * 10 8 7 13 13 H 1.08999 * 109.46902 * 4.95098 * 12 10 8 14 14 C 1.53000 * 109.46920 * 124.94931 * 12 10 8 15 15 C 1.50693 * 109.46840 * 244.95196 * 12 10 8 16 16 H 1.08004 * 120.00246 * 359.97438 * 15 12 10 17 17 C 1.37884 * 119.99964 * 179.97438 * 15 12 10 18 18 N 1.31516 * 119.99813 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00075 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46885 * 89.99896 * 19 17 15 21 21 H 1.48493 * 109.46990 * 209.99931 * 19 17 15 22 22 H 1.48499 * 109.47032 * 330.00139 * 19 17 15 23 23 C 1.53041 * 109.54190 * 61.23924 * 7 6 5 24 24 C 1.46928 * 120.62543 * 355.51785 * 4 2 1 25 25 H 1.09000 * 109.47328 * 95.13418 * 1 2 3 26 26 H 1.09004 * 109.47405 * 215.13923 * 1 2 3 27 27 H 1.09009 * 109.46825 * 335.13592 * 1 2 3 28 28 H 1.08999 * 109.58596 * 353.41931 * 5 4 2 29 29 H 1.08992 * 109.58560 * 113.84538 * 5 4 2 30 30 H 1.08997 * 109.56383 * 185.55241 * 6 5 4 31 31 H 1.09004 * 109.38445 * 65.51463 * 6 5 4 32 32 H 1.09000 * 109.44915 * 301.22597 * 7 6 5 33 33 H 1.09007 * 109.46703 * 94.97745 * 11 10 8 34 34 H 1.08996 * 109.47452 * 214.97997 * 11 10 8 35 35 H 1.08995 * 109.47159 * 334.98381 * 11 10 8 36 36 H 1.09000 * 109.46617 * 180.02562 * 14 12 10 37 37 H 1.08994 * 109.47062 * 299.99968 * 14 12 10 38 38 H 1.08999 * 109.47196 * 60.00347 * 14 12 10 39 39 H 0.97000 * 119.99906 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.50372 * 178.68356 * 23 7 6 41 41 H 1.09002 * 109.49945 * 58.58220 * 23 7 6 42 42 H 1.09005 * 109.58499 * 246.15606 * 24 4 2 43 43 H 1.08996 * 109.58932 * 6.43825 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 3.6462 -1.1861 -0.0993 6 6 4.0508 -2.1028 -1.2525 7 6 3.4168 -3.4811 -1.0521 8 6 3.8397 -4.3960 -2.1724 9 8 3.0553 -4.6791 -3.0531 10 7 5.0895 -4.8997 -2.1957 11 6 5.4623 -5.8878 -3.2111 12 6 6.0754 -4.4592 -1.2055 13 1 5.5960 -3.7958 -0.4858 14 6 6.6446 -5.6775 -0.4758 15 6 7.1915 -3.7234 -1.9010 16 1 7.1690 -3.5969 -2.9734 17 6 8.2415 -3.2116 -1.1684 18 7 8.2691 -3.3661 0.1374 19 14 9.6254 -2.3001 -2.0306 20 1 9.2960 -0.8539 -2.1029 21 1 10.8877 -2.4828 -1.2701 22 1 9.7927 -2.8390 -3.4042 23 6 1.8921 -3.3480 -1.0506 24 6 1.4635 -2.4452 0.1105 25 1 -0.3634 -0.0920 -1.0235 26 1 -0.3634 -0.8404 0.5915 27 1 -0.3633 0.9325 0.4321 28 1 4.0119 -0.1773 -0.2907 29 1 4.0742 -1.5620 0.8299 30 1 5.1360 -2.2016 -1.2768 31 1 3.7031 -1.6757 -2.1932 32 1 3.7459 -3.8970 -0.0998 33 1 5.9296 -5.3819 -4.0560 34 1 6.1644 -6.6026 -2.7820 35 1 4.5703 -6.4139 -3.5508 36 1 7.3778 -5.3497 0.2612 37 1 5.8373 -6.2097 0.0272 38 1 7.1241 -6.3410 -1.1955 39 1 9.0076 -3.0057 0.6529 40 1 1.4409 -4.3330 -0.9312 41 1 1.5643 -2.9089 -1.9928 42 1 1.7099 -2.9259 1.0573 43 1 0.3895 -2.2666 0.0601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701266567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:04 Heat of formation + Delta-G solvation = -75.136587 kcal Electronic energy + Delta-G solvation = -23743.646645 eV Core-core repulsion = 20402.721268 eV Total energy + Delta-G solvation = -3340.925377 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28119 -39.15651 -36.80110 -35.63255 -32.96987 -32.69191 -31.29005 -29.48704 -29.18431 -27.04182 -25.41631 -24.80499 -22.97411 -21.71163 -20.81004 -19.05297 -18.22105 -17.04947 -16.56311 -16.30735 -15.74582 -15.35662 -15.14958 -14.64281 -14.38984 -13.92150 -13.67861 -13.32353 -13.17290 -13.08257 -12.78750 -12.69019 -12.10657 -12.00244 -11.85722 -11.71168 -11.59849 -11.38247 -11.15034 -11.02803 -10.86928 -10.75546 -10.42484 -10.37793 -10.22757 -10.18907 -9.66856 -9.38690 -9.01792 -8.59317 -8.48946 -7.66765 -6.22291 -4.31038 2.69262 3.11076 3.20588 3.28305 3.29011 3.35815 3.92774 4.29601 4.60438 4.78947 5.01842 5.08127 5.08847 5.20387 5.27384 5.28254 5.42445 5.45815 5.68409 5.71294 5.80179 5.90527 6.00668 6.10867 6.17716 6.21369 6.26413 6.40192 6.41334 6.51846 6.62359 6.67257 6.76342 6.90589 7.15472 7.35747 7.50361 7.62404 7.82561 8.06524 8.24609 8.39637 8.72241 8.97361 9.38051 10.81687 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.005923 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.832949 B = 4726.136107 C = 5836.903812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.510 3.490 3 O -0.553 6.553 4 N -0.611 5.611 5 C 0.115 3.885 6 C -0.132 4.132 7 C -0.100 4.100 8 C 0.514 3.486 9 O -0.577 6.577 10 N -0.591 5.591 11 C 0.094 3.906 12 C 0.250 3.750 13 H 0.059 0.941 14 C -0.153 4.153 15 C -0.529 4.529 16 H 0.061 0.939 17 C 0.069 3.931 18 N -0.887 5.887 19 Si 0.895 3.105 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.114 4.114 24 C 0.105 3.895 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.114 0.886 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.012 0.988 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 -0.431 2.322 11.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.299 3.701 3 O -0.431 6.431 4 N -0.345 5.345 5 C -0.007 4.007 6 C -0.170 4.170 7 C -0.121 4.121 8 C 0.302 3.698 9 O -0.458 6.458 10 N -0.321 5.321 11 C -0.049 4.049 12 C 0.149 3.851 13 H 0.077 0.923 14 C -0.212 4.212 15 C -0.567 4.567 16 H 0.079 0.921 17 C -0.134 4.134 18 N -0.525 5.525 19 Si 0.723 3.277 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.152 4.152 24 C -0.018 4.018 25 H 0.110 0.890 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.090 0.910 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.031 0.969 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.533 0.007 2.045 11.713 hybrid contribution 1.024 0.279 -0.431 1.145 sum -10.509 0.285 1.614 10.636 Atomic orbital electron populations 1.21965 0.92289 1.04650 1.04569 1.20755 0.90497 0.83182 0.75670 1.90702 1.70769 1.31139 1.50478 1.48263 1.07863 1.05979 1.72379 1.21558 0.78487 1.01728 0.98932 1.21999 1.04108 0.92581 0.98296 1.21192 0.95909 0.96223 0.98787 1.20425 0.81865 0.80845 0.86664 1.90581 1.53388 1.62183 1.39691 1.48243 1.11108 1.40842 1.31918 1.21374 0.99862 0.91967 0.91685 1.19177 0.86530 0.92902 0.86477 0.92299 1.22140 1.00354 0.97640 1.01016 1.21328 1.05634 1.35434 0.94327 0.92109 1.24863 0.97900 0.95781 0.94843 1.69842 1.32352 1.45117 1.05148 0.86528 0.81335 0.80204 0.79641 1.20431 1.21091 1.19889 1.21734 0.94781 0.99911 0.98814 1.21875 0.96896 0.83911 0.99103 0.88964 0.89895 0.89237 0.88905 0.90956 0.86756 0.91794 0.88806 0.93504 0.91587 0.92270 0.88643 0.96874 0.94708 0.92506 0.90494 0.90676 0.91081 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 9.42 36.00 0.34 -1.26 16 2 C 0.51 7.23 7.80 -10.99 -0.09 7.14 16 3 O -0.55 -10.22 16.53 5.56 0.09 -10.13 16 4 N -0.61 -8.35 2.98 -173.03 -0.52 -8.87 16 5 C 0.11 1.80 6.39 -3.93 -0.03 1.78 16 6 C -0.13 -2.26 4.95 -26.83 -0.13 -2.40 16 7 C -0.10 -1.64 1.63 -91.73 -0.15 -1.79 16 8 C 0.51 10.22 6.90 -10.99 -0.08 10.15 16 9 O -0.58 -12.60 15.58 5.55 0.09 -12.52 16 10 N -0.59 -12.14 2.75 -175.26 -0.48 -12.62 16 11 C 0.09 1.78 9.93 59.85 0.59 2.38 16 12 C 0.25 5.48 1.81 -69.08 -0.13 5.36 16 13 H 0.06 1.32 4.51 -51.93 -0.23 1.08 16 14 C -0.15 -3.28 8.82 37.16 0.33 -2.95 16 15 C -0.53 -12.94 7.76 -34.44 -0.27 -13.20 16 16 H 0.06 1.55 7.79 -52.48 -0.41 1.14 16 17 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -22.49 11.32 55.43 0.63 -21.86 16 19 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C -0.11 -1.53 4.74 -26.61 -0.13 -1.66 16 24 C 0.11 1.13 6.27 -3.71 -0.02 1.11 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.56 6.27 -51.93 -0.33 0.23 16 27 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 28 H 0.09 1.59 7.04 -51.93 -0.37 1.22 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.11 2.29 5.49 -51.93 -0.29 2.01 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.52 7.15 -51.93 -0.37 1.15 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 1.17 6.23 -51.93 -0.32 0.85 16 35 H 0.06 1.07 7.36 -51.93 -0.38 0.68 16 36 H 0.10 2.24 6.07 -51.93 -0.32 1.93 16 37 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.03 0.72 6.58 -51.93 -0.34 0.38 16 39 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.11 7.99 -51.93 -0.41 0.70 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.70 5.49 -51.93 -0.29 0.41 16 LS Contribution 333.17 15.07 5.02 5.02 Total: -1.00 -29.56 333.17 -6.61 -36.17 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -6.57 Total: 3.59 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 0.16 Total: 6.28 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.37 Total: -43.35 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.18 Total: -22.64 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.56 -6.61 -36.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701266567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.969 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds