Wall clock time and date at job start Tue Mar 31 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21277 * 120.00256 * 2 1 4 4 N 1.34783 * 120.00086 * 179.72558 * 2 1 3 5 5 C 1.46924 * 120.63353 * 175.23704 * 4 2 1 6 6 C 1.52767 * 109.00768 * 233.58414 * 5 4 2 7 7 C 1.53032 * 109.38248 * 305.58879 * 6 5 4 8 8 C 1.50700 * 109.45957 * 181.26168 * 7 6 5 9 9 O 1.21287 * 119.99788 * 254.62573 * 8 7 6 10 10 N 1.34771 * 120.00128 * 74.63092 * 8 7 6 11 11 C 1.46502 * 120.00189 * 174.16925 * 10 8 7 12 12 C 1.46507 * 119.99975 * 354.17251 * 10 8 7 13 13 H 1.08999 * 109.46902 * 4.95098 * 12 10 8 14 14 C 1.53000 * 109.46920 * 124.94931 * 12 10 8 15 15 C 1.50693 * 109.46840 * 244.95196 * 12 10 8 16 16 H 1.08004 * 120.00246 * 359.97438 * 15 12 10 17 17 C 1.37884 * 119.99964 * 179.97438 * 15 12 10 18 18 N 1.31516 * 119.99813 * 0.02562 * 17 15 12 19 19 Si 1.86802 * 120.00075 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46885 * 89.99896 * 19 17 15 21 21 H 1.48493 * 109.46990 * 209.99931 * 19 17 15 22 22 H 1.48499 * 109.47032 * 330.00139 * 19 17 15 23 23 C 1.53041 * 109.54190 * 61.23924 * 7 6 5 24 24 C 1.46928 * 120.62543 * 355.51785 * 4 2 1 25 25 H 1.09000 * 109.47328 * 95.13418 * 1 2 3 26 26 H 1.09004 * 109.47405 * 215.13923 * 1 2 3 27 27 H 1.09009 * 109.46825 * 335.13592 * 1 2 3 28 28 H 1.08999 * 109.58596 * 353.41931 * 5 4 2 29 29 H 1.08992 * 109.58560 * 113.84538 * 5 4 2 30 30 H 1.08997 * 109.56383 * 185.55241 * 6 5 4 31 31 H 1.09004 * 109.38445 * 65.51463 * 6 5 4 32 32 H 1.09000 * 109.44915 * 301.22597 * 7 6 5 33 33 H 1.09007 * 109.46703 * 94.97745 * 11 10 8 34 34 H 1.08996 * 109.47452 * 214.97997 * 11 10 8 35 35 H 1.08995 * 109.47159 * 334.98381 * 11 10 8 36 36 H 1.09000 * 109.46617 * 180.02562 * 14 12 10 37 37 H 1.08994 * 109.47062 * 299.99968 * 14 12 10 38 38 H 1.08999 * 109.47196 * 60.00347 * 14 12 10 39 39 H 0.97000 * 119.99906 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.50372 * 178.68356 * 23 7 6 41 41 H 1.09002 * 109.49945 * 58.58220 * 23 7 6 42 42 H 1.09005 * 109.58499 * 246.15606 * 24 4 2 43 43 H 1.08996 * 109.58932 * 6.43825 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0056 5 6 3.6462 -1.1861 -0.0993 6 6 4.0508 -2.1028 -1.2525 7 6 3.4168 -3.4811 -1.0521 8 6 3.8397 -4.3960 -2.1724 9 8 3.0553 -4.6791 -3.0531 10 7 5.0895 -4.8997 -2.1957 11 6 5.4623 -5.8878 -3.2111 12 6 6.0754 -4.4592 -1.2055 13 1 5.5960 -3.7958 -0.4858 14 6 6.6446 -5.6775 -0.4758 15 6 7.1915 -3.7234 -1.9010 16 1 7.1690 -3.5969 -2.9734 17 6 8.2415 -3.2116 -1.1684 18 7 8.2691 -3.3661 0.1374 19 14 9.6254 -2.3001 -2.0306 20 1 9.2960 -0.8539 -2.1029 21 1 10.8877 -2.4828 -1.2701 22 1 9.7927 -2.8390 -3.4042 23 6 1.8921 -3.3480 -1.0506 24 6 1.4635 -2.4452 0.1105 25 1 -0.3634 -0.0920 -1.0235 26 1 -0.3634 -0.8404 0.5915 27 1 -0.3633 0.9325 0.4321 28 1 4.0119 -0.1773 -0.2907 29 1 4.0742 -1.5620 0.8299 30 1 5.1360 -2.2016 -1.2768 31 1 3.7031 -1.6757 -2.1932 32 1 3.7459 -3.8970 -0.0998 33 1 5.9296 -5.3819 -4.0560 34 1 6.1644 -6.6026 -2.7820 35 1 4.5703 -6.4139 -3.5508 36 1 7.3778 -5.3497 0.2612 37 1 5.8373 -6.2097 0.0272 38 1 7.1241 -6.3410 -1.1955 39 1 9.0076 -3.0057 0.6529 40 1 1.4409 -4.3330 -0.9312 41 1 1.5643 -2.9089 -1.9928 42 1 1.7099 -2.9259 1.0573 43 1 0.3895 -2.2666 0.0601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701266567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:03 Heat of formation + Delta-G solvation = -92.994117 kcal Electronic energy + Delta-G solvation = -23744.421005 eV Core-core repulsion = 20402.721268 eV Total energy + Delta-G solvation = -3341.699737 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58091 -40.54505 -38.07554 -37.34971 -34.54552 -34.21855 -32.41187 -30.96698 -30.41098 -28.45664 -27.27326 -26.10443 -24.16625 -23.31950 -22.16807 -20.27574 -19.68625 -18.45770 -18.18681 -17.79968 -16.92274 -16.79728 -16.46687 -16.26140 -16.00504 -15.08315 -14.96613 -14.88832 -14.53512 -14.33298 -14.22328 -13.77394 -13.47957 -13.35304 -13.21518 -13.03859 -12.90879 -12.86203 -12.80274 -12.63122 -12.44597 -12.25067 -12.10539 -11.93299 -11.73394 -11.60475 -11.17654 -10.84037 -10.61189 -10.46475 -9.67633 -9.36100 -8.13988 -6.26899 1.40140 1.44829 1.50704 1.62165 1.73971 2.06643 2.34189 2.49124 3.14618 3.57915 3.68156 3.76680 3.93957 4.09430 4.20850 4.32239 4.45159 4.46312 4.56259 4.61403 4.64439 4.70322 4.76280 4.78001 4.83429 4.88018 4.95037 4.98307 5.00673 5.04218 5.15829 5.20495 5.32709 5.42695 5.54902 5.60725 5.76785 6.01592 6.22721 6.46826 6.66315 6.86348 7.17122 7.31994 7.46820 8.88128 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.005923 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.832949 B = 4726.136107 C = 5836.903812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.501 3.499 3 O -0.606 6.606 4 N -0.611 5.611 5 C 0.122 3.878 6 C -0.119 4.119 7 C -0.096 4.096 8 C 0.508 3.492 9 O -0.597 6.597 10 N -0.598 5.598 11 C 0.094 3.906 12 C 0.256 3.744 13 H 0.056 0.944 14 C -0.144 4.144 15 C -0.536 4.536 16 H 0.044 0.956 17 C 0.036 3.964 18 N -0.902 5.902 19 Si 0.941 3.059 20 H -0.282 1.282 21 H -0.281 1.281 22 H -0.276 1.276 23 C -0.107 4.107 24 C 0.107 3.893 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.038 0.962 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.266 0.734 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.533 -1.091 3.102 13.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.292 3.708 3 O -0.488 6.488 4 N -0.344 5.344 5 C -0.001 4.001 6 C -0.157 4.157 7 C -0.117 4.117 8 C 0.297 3.703 9 O -0.480 6.480 10 N -0.328 5.328 11 C -0.049 4.049 12 C 0.155 3.845 13 H 0.073 0.927 14 C -0.202 4.202 15 C -0.575 4.575 16 H 0.062 0.938 17 C -0.165 4.165 18 N -0.540 5.540 19 Si 0.768 3.232 20 H -0.208 1.208 21 H -0.206 1.206 22 H -0.201 1.201 23 C -0.146 4.146 24 C -0.014 4.014 25 H 0.127 0.873 26 H 0.134 0.866 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.469 -0.687 2.824 13.779 hybrid contribution 1.628 0.459 -0.729 1.842 sum -11.841 -0.227 2.095 12.027 Atomic orbital electron populations 1.22001 0.87729 1.06458 1.06270 1.21771 0.92620 0.82241 0.74173 1.90679 1.72261 1.33027 1.52874 1.48380 1.06849 1.07353 1.71830 1.21286 0.80601 0.99986 0.98272 1.21777 1.02060 0.93598 0.98312 1.21232 0.98326 0.94525 0.97588 1.21017 0.81355 0.80733 0.87160 1.90562 1.53780 1.62954 1.40679 1.48309 1.11260 1.41225 1.31987 1.21434 1.00443 0.91835 0.91237 1.18987 0.86085 0.92925 0.86498 0.92659 1.21988 1.00378 0.97370 1.00474 1.21446 1.06589 1.35819 0.93618 0.93759 1.25343 0.99412 0.96424 0.95358 1.69909 1.32791 1.45637 1.05699 0.85813 0.79605 0.79008 0.78743 1.20776 1.20623 1.20108 1.21716 0.92041 1.01344 0.99457 1.22130 0.98782 0.81872 0.98637 0.87339 0.86592 0.88728 0.91053 0.90512 0.89964 0.93253 0.88126 0.94321 0.90559 0.91432 0.90663 0.94930 0.94611 0.92490 0.89016 0.92064 0.89139 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.42 71.23 0.67 -1.73 16 2 C 0.50 13.38 7.80 87.65 0.68 14.06 16 3 O -0.61 -22.54 16.53 -3.02 -0.05 -22.59 16 4 N -0.61 -15.62 2.98 -819.73 -2.44 -18.06 16 5 C 0.12 3.84 6.39 86.22 0.55 4.39 16 6 C -0.12 -4.15 4.95 30.53 0.15 -4.00 16 7 C -0.10 -3.06 1.63 -11.52 -0.02 -3.07 16 8 C 0.51 19.91 6.90 87.66 0.61 20.52 16 9 O -0.60 -25.62 15.58 -3.05 -0.05 -25.67 16 10 N -0.60 -24.38 2.75 -826.79 -2.28 -26.65 16 11 C 0.09 3.48 9.93 127.77 1.27 4.75 16 12 C 0.26 11.24 1.81 44.24 0.08 11.32 16 13 H 0.06 2.48 4.51 -2.39 -0.01 2.47 16 14 C -0.14 -6.04 8.82 71.98 0.64 -5.40 16 15 C -0.54 -26.54 7.76 25.60 0.20 -26.34 16 16 H 0.04 2.30 7.79 -2.91 -0.02 2.28 16 17 C 0.04 1.79 5.30 84.66 0.45 2.24 16 18 N -0.90 -45.87 11.32 21.45 0.24 -45.63 16 19 Si 0.94 41.18 29.54 68.60 2.03 43.21 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 23 C -0.11 -2.60 4.74 30.67 0.15 -2.46 16 24 C 0.11 1.91 6.27 86.36 0.54 2.45 16 25 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.12 0.91 6.27 -2.39 -0.01 0.89 16 27 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.07 2.56 7.04 -2.39 -0.02 2.54 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 3.42 5.49 -2.39 -0.01 3.41 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.10 3.10 7.15 -2.39 -0.02 3.08 16 33 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.08 2.64 6.23 -2.39 -0.01 2.63 16 35 H 0.07 2.38 7.36 -2.39 -0.02 2.36 16 36 H 0.07 3.51 6.07 -2.39 -0.01 3.49 16 37 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.03 1.45 6.58 -2.39 -0.02 1.44 16 39 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.68 7.99 -2.39 -0.02 1.66 16 42 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.13 1.31 5.49 -2.39 -0.01 1.29 16 Total: -1.00 -64.98 333.17 4.42 -60.56 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 1.00 Total: 18.12 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 5.96 Total: 16.72 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -4.47 Total: -90.35 kcal Atomic # 8 Polarization: -48.16 SS G_CDS: -0.10 Total: -48.26 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -64.98 4.42 -60.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701266567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.437 kcal (2) G-P(sol) polarization free energy of solvation -64.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds