Wall clock time and date at job start Tue Mar 31 2020 05:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21280 * 119.99780 * 2 1 4 4 N 1.34778 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.62635 * 5.49752 * 4 2 1 6 6 C 1.53199 * 108.77519 * 233.62833 * 5 4 2 7 7 C 1.53034 * 109.31033 * 305.36613 * 6 5 4 8 8 C 1.50699 * 109.46092 * 181.38403 * 7 6 5 9 9 O 1.21279 * 119.99980 * 345.25322 * 8 7 6 10 10 N 1.34775 * 120.00208 * 165.24908 * 8 7 6 11 11 C 1.46507 * 120.00263 * 185.87926 * 10 8 7 12 12 C 1.46502 * 120.00170 * 5.88147 * 10 8 7 13 13 H 1.08997 * 109.46724 * 354.99804 * 12 10 8 14 14 C 1.52999 * 109.47388 * 234.99391 * 12 10 8 15 15 C 1.50705 * 109.47066 * 114.99093 * 12 10 8 16 16 H 1.07995 * 120.00215 * 0.02562 * 15 12 10 17 17 C 1.37876 * 119.99962 * 180.02562 * 15 12 10 18 18 N 1.31509 * 120.00002 * 180.02562 * 17 15 12 19 19 Si 1.86797 * 120.00024 * 359.97438 * 17 15 12 20 20 H 1.48501 * 109.47551 * 270.00435 * 19 17 15 21 21 H 1.48508 * 109.47226 * 30.00231 * 19 17 15 22 22 H 1.48502 * 109.47233 * 149.99929 * 19 17 15 23 23 C 1.53042 * 109.54331 * 61.36397 * 7 6 5 24 24 C 1.46924 * 120.63103 * 185.51747 * 4 2 1 25 25 H 1.09004 * 109.47505 * 185.44062 * 1 2 3 26 26 H 1.09001 * 109.47636 * 305.44735 * 1 2 3 27 27 H 1.09002 * 109.46867 * 65.44936 * 1 2 3 28 28 H 1.09000 * 109.58735 * 113.84365 * 5 4 2 29 29 H 1.08999 * 109.70735 * 353.48494 * 5 4 2 30 30 H 1.08996 * 109.49550 * 185.41498 * 6 5 4 31 31 H 1.08997 * 109.52340 * 65.33347 * 6 5 4 32 32 H 1.09002 * 109.46460 * 301.36114 * 7 6 5 33 33 H 1.09003 * 109.46581 * 275.12865 * 11 10 8 34 34 H 1.09001 * 109.46688 * 35.12689 * 11 10 8 35 35 H 1.08994 * 109.47088 * 155.12867 * 11 10 8 36 36 H 1.09000 * 109.46777 * 59.99660 * 14 12 10 37 37 H 1.08997 * 109.46909 * 179.97438 * 14 12 10 38 38 H 1.08997 * 109.47009 * 300.00022 * 14 12 10 39 39 H 0.97007 * 120.00009 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.49289 * 58.58147 * 23 7 6 41 41 H 1.08993 * 109.50155 * 178.68317 * 23 7 6 42 42 H 1.09005 * 109.58631 * 246.15709 * 24 4 2 43 43 H 1.08999 * 109.59025 * 6.44135 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4653 -2.4447 -0.1200 6 6 1.8761 -3.3517 1.0442 7 6 3.4005 -3.4849 1.0685 8 6 3.8064 -4.4038 2.1918 9 8 3.0090 -4.6893 3.0599 10 7 5.0554 -4.9085 2.2318 11 6 5.4124 -5.9010 3.2486 12 6 6.0564 -4.4644 1.2586 13 1 5.5880 -3.7984 0.5340 14 6 6.6369 -5.6801 0.5333 15 6 7.1617 -3.7310 1.9738 16 1 7.1228 -3.6083 3.0460 17 6 8.2227 -3.2167 1.2592 18 7 9.1875 -2.5771 1.8834 19 14 8.2906 -3.4295 -0.5954 20 1 9.0027 -4.6907 -0.9233 21 1 6.9093 -3.4855 -1.1381 22 1 9.0134 -2.2815 -1.1993 23 6 4.0314 -2.1073 1.2836 24 6 3.6450 -1.1862 0.1221 25 1 -0.3634 -1.0230 0.0974 26 1 -0.3634 0.5960 0.8372 27 1 -0.3633 0.4270 -0.9348 28 1 1.7262 -2.9219 -1.0646 29 1 0.3902 -2.2686 -0.0843 30 1 1.4269 -4.3363 0.9144 31 1 1.5340 -2.9167 1.9832 32 1 3.7442 -3.8973 0.1198 33 1 5.6988 -5.3916 4.1687 34 1 4.5559 -6.5468 3.4423 35 1 6.2478 -6.5029 2.8913 36 1 5.8374 -6.2105 0.0160 37 1 7.3813 -5.3496 -0.1911 38 1 7.1052 -6.3461 1.2579 39 1 9.9339 -2.2149 1.3805 40 1 3.6689 -1.6834 2.2201 41 1 5.1161 -2.2062 1.3241 42 1 4.0836 -1.5608 -0.8028 43 1 4.0087 -0.1772 0.3165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701266569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:06 Heat of formation + Delta-G solvation = -61.163608 kcal Electronic energy + Delta-G solvation = -23836.761561 eV Core-core repulsion = 20496.442098 eV Total energy + Delta-G solvation = -3340.319463 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39215 -39.28289 -36.89403 -35.86105 -33.07103 -32.63971 -31.40313 -30.17062 -29.51581 -27.16333 -25.42130 -24.85228 -23.07795 -21.89034 -20.93480 -19.13914 -18.27698 -17.13140 -17.05651 -16.33035 -15.83158 -15.49863 -15.32954 -14.99955 -14.33895 -14.03976 -13.77204 -13.52168 -13.30075 -13.23453 -12.93669 -12.74544 -12.41160 -12.16030 -12.04484 -12.00141 -11.85198 -11.57966 -11.47460 -11.31697 -11.04854 -10.69101 -10.52334 -10.45904 -10.26326 -9.83745 -9.71517 -9.48828 -9.15247 -8.78174 -8.58858 -7.80806 -6.27869 -4.30849 2.63592 3.02840 3.10018 3.16760 3.20630 3.25004 3.75740 4.18397 4.53240 4.63993 4.84653 4.97689 5.01213 5.13769 5.17659 5.27981 5.30095 5.34863 5.56217 5.59456 5.76095 5.79148 5.89542 5.91269 6.04988 6.07626 6.10388 6.16487 6.18243 6.25116 6.32288 6.44190 6.48433 6.57168 6.74502 6.81872 7.23579 7.42748 7.46112 8.03565 8.18495 8.40386 8.74424 8.83328 9.31151 10.84640 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.006304 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.033605 B = 4440.512116 C = 5477.869949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.511 3.489 3 O -0.551 6.551 4 N -0.611 5.611 5 C 0.102 3.898 6 C -0.114 4.114 7 C -0.103 4.103 8 C 0.517 3.483 9 O -0.568 6.568 10 N -0.586 5.586 11 C 0.097 3.903 12 C 0.223 3.777 13 H 0.055 0.945 14 C -0.167 4.167 15 C -0.533 4.533 16 H 0.081 0.919 17 C 0.079 3.921 18 N -0.887 5.887 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.265 1.265 22 H -0.292 1.292 23 C -0.134 4.134 24 C 0.113 3.887 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.268 0.732 40 H 0.069 0.931 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.220 -2.446 -6.388 15.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.300 3.700 3 O -0.430 6.430 4 N -0.345 5.345 5 C -0.021 4.021 6 C -0.153 4.153 7 C -0.124 4.124 8 C 0.304 3.696 9 O -0.449 6.449 10 N -0.315 5.315 11 C -0.046 4.046 12 C 0.120 3.880 13 H 0.073 0.927 14 C -0.225 4.225 15 C -0.571 4.571 16 H 0.099 0.901 17 C -0.125 4.125 18 N -0.523 5.523 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.190 1.190 22 H -0.220 1.220 23 C -0.172 4.172 24 C -0.009 4.009 25 H 0.102 0.898 26 H 0.111 0.889 27 H 0.110 0.890 28 H 0.089 0.911 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.130 0.870 42 H 0.087 0.913 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.093 -1.945 -5.950 15.421 hybrid contribution 0.490 -0.273 -0.986 1.134 sum -13.603 -2.217 -6.935 15.429 Atomic orbital electron populations 1.22027 0.92247 1.04536 1.05044 1.20762 0.90525 0.83167 0.75572 1.90710 1.70684 1.31113 1.50445 1.48261 1.07879 1.06055 1.72315 1.21953 0.97321 0.83859 0.98958 1.21745 0.94554 0.99997 0.99005 1.21237 0.96372 0.96268 0.98537 1.20381 0.81749 0.80783 0.86641 1.90601 1.52249 1.61774 1.40278 1.47891 1.10397 1.41040 1.32210 1.21403 1.00020 0.91489 0.91676 1.19528 0.88019 0.92425 0.87993 0.92745 1.22521 0.99792 1.00000 1.00169 1.21160 1.04129 1.35375 0.96434 0.90112 1.24895 0.95134 0.94419 0.98086 1.69865 1.10248 1.36107 1.36121 0.86990 0.78720 0.77134 0.86222 1.20310 1.19024 1.21954 1.22099 1.04019 0.92521 0.98599 1.21660 0.78780 1.01944 0.98524 0.89835 0.88855 0.88994 0.91115 0.88912 0.90395 0.90436 0.89044 0.93224 0.92563 0.91008 0.94667 0.93046 0.92116 0.92217 0.91202 0.86961 0.91309 0.88595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 10.08 36.00 0.36 -1.19 16 2 C 0.51 6.99 7.80 -10.99 -0.09 6.91 16 3 O -0.55 -9.97 16.54 5.56 0.09 -9.87 16 4 N -0.61 -7.98 2.97 -172.77 -0.51 -8.50 16 5 C 0.10 1.02 6.35 -3.71 -0.02 1.00 16 6 C -0.11 -1.44 4.74 -26.61 -0.13 -1.57 16 7 C -0.10 -1.60 1.62 -91.73 -0.15 -1.75 16 8 C 0.52 9.84 6.90 -10.99 -0.08 9.77 16 9 O -0.57 -12.01 15.75 5.56 0.09 -11.92 16 10 N -0.59 -11.52 2.75 -175.26 -0.48 -12.00 16 11 C 0.10 1.76 9.77 59.85 0.58 2.35 16 12 C 0.22 4.61 1.41 -69.08 -0.10 4.52 16 13 H 0.06 1.10 3.57 -51.93 -0.19 0.92 16 14 C -0.17 -3.18 8.57 37.16 0.32 -2.87 16 15 C -0.53 -13.36 8.35 -34.44 -0.29 -13.65 16 16 H 0.08 2.30 8.04 -52.49 -0.42 1.87 16 17 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 18 N -0.89 -25.17 13.96 55.43 0.77 -24.39 16 19 Si 0.88 19.59 24.37 -169.99 -4.14 15.45 16 20 H -0.28 -6.04 6.87 56.52 0.39 -5.65 16 21 H -0.27 -5.42 6.53 56.52 0.37 -5.05 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 23 C -0.13 -2.23 4.96 -26.61 -0.13 -2.36 16 24 C 0.11 1.70 6.42 -3.71 -0.02 1.67 16 25 H 0.08 0.54 5.17 -51.93 -0.27 0.27 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.67 5.07 -51.93 -0.26 0.41 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.09 7.99 -51.93 -0.41 0.68 16 32 H 0.09 1.34 7.15 -51.93 -0.37 0.97 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.95 7.67 -51.93 -0.40 0.55 16 35 H 0.07 1.22 6.17 -51.93 -0.32 0.90 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 38 H 0.06 1.13 6.49 -51.93 -0.34 0.79 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.11 2.17 5.50 -51.93 -0.29 1.88 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.10 1.58 7.04 -51.93 -0.37 1.22 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -31.60 325.83 -5.47 -37.07 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.36 Total: 4.49 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 0.17 Total: 4.77 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.22 Total: -44.89 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: 0.18 Total: -21.80 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.14 Total: 15.45 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.60 -5.47 -37.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701266569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.094 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds