Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21280 * 119.99780 * 2 1 4 4 N 1.34778 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.62635 * 5.49752 * 4 2 1 6 6 C 1.53199 * 108.77519 * 233.62833 * 5 4 2 7 7 C 1.53034 * 109.31033 * 305.36613 * 6 5 4 8 8 C 1.50699 * 109.46092 * 181.38403 * 7 6 5 9 9 O 1.21279 * 119.99980 * 345.25322 * 8 7 6 10 10 N 1.34775 * 120.00208 * 165.24908 * 8 7 6 11 11 C 1.46507 * 120.00263 * 185.87926 * 10 8 7 12 12 C 1.46502 * 120.00170 * 5.88147 * 10 8 7 13 13 H 1.08997 * 109.46724 * 354.99804 * 12 10 8 14 14 C 1.52999 * 109.47388 * 234.99391 * 12 10 8 15 15 C 1.50705 * 109.47066 * 114.99093 * 12 10 8 16 16 H 1.07995 * 120.00215 * 0.02562 * 15 12 10 17 17 C 1.37876 * 119.99962 * 180.02562 * 15 12 10 18 18 N 1.31509 * 120.00002 * 180.02562 * 17 15 12 19 19 Si 1.86797 * 120.00024 * 359.97438 * 17 15 12 20 20 H 1.48501 * 109.47551 * 270.00435 * 19 17 15 21 21 H 1.48508 * 109.47226 * 30.00231 * 19 17 15 22 22 H 1.48502 * 109.47233 * 149.99929 * 19 17 15 23 23 C 1.53042 * 109.54331 * 61.36397 * 7 6 5 24 24 C 1.46924 * 120.63103 * 185.51747 * 4 2 1 25 25 H 1.09004 * 109.47505 * 185.44062 * 1 2 3 26 26 H 1.09001 * 109.47636 * 305.44735 * 1 2 3 27 27 H 1.09002 * 109.46867 * 65.44936 * 1 2 3 28 28 H 1.09000 * 109.58735 * 113.84365 * 5 4 2 29 29 H 1.08999 * 109.70735 * 353.48494 * 5 4 2 30 30 H 1.08996 * 109.49550 * 185.41498 * 6 5 4 31 31 H 1.08997 * 109.52340 * 65.33347 * 6 5 4 32 32 H 1.09002 * 109.46460 * 301.36114 * 7 6 5 33 33 H 1.09003 * 109.46581 * 275.12865 * 11 10 8 34 34 H 1.09001 * 109.46688 * 35.12689 * 11 10 8 35 35 H 1.08994 * 109.47088 * 155.12867 * 11 10 8 36 36 H 1.09000 * 109.46777 * 59.99660 * 14 12 10 37 37 H 1.08997 * 109.46909 * 179.97438 * 14 12 10 38 38 H 1.08997 * 109.47009 * 300.00022 * 14 12 10 39 39 H 0.97007 * 120.00009 * 180.02562 * 18 17 15 40 40 H 1.09003 * 109.49289 * 58.58147 * 23 7 6 41 41 H 1.08993 * 109.50155 * 178.68317 * 23 7 6 42 42 H 1.09005 * 109.58631 * 246.15709 * 24 4 2 43 43 H 1.08999 * 109.59025 * 6.44135 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4653 -2.4447 -0.1200 6 6 1.8761 -3.3517 1.0442 7 6 3.4005 -3.4849 1.0685 8 6 3.8064 -4.4038 2.1918 9 8 3.0090 -4.6893 3.0599 10 7 5.0554 -4.9085 2.2318 11 6 5.4124 -5.9010 3.2486 12 6 6.0564 -4.4644 1.2586 13 1 5.5880 -3.7984 0.5340 14 6 6.6369 -5.6801 0.5333 15 6 7.1617 -3.7310 1.9738 16 1 7.1228 -3.6083 3.0460 17 6 8.2227 -3.2167 1.2592 18 7 9.1875 -2.5771 1.8834 19 14 8.2906 -3.4295 -0.5954 20 1 9.0027 -4.6907 -0.9233 21 1 6.9093 -3.4855 -1.1381 22 1 9.0134 -2.2815 -1.1993 23 6 4.0314 -2.1073 1.2836 24 6 3.6450 -1.1862 0.1221 25 1 -0.3634 -1.0230 0.0974 26 1 -0.3634 0.5960 0.8372 27 1 -0.3633 0.4270 -0.9348 28 1 1.7262 -2.9219 -1.0646 29 1 0.3902 -2.2686 -0.0843 30 1 1.4269 -4.3363 0.9144 31 1 1.5340 -2.9167 1.9832 32 1 3.7442 -3.8973 0.1198 33 1 5.6988 -5.3916 4.1687 34 1 4.5559 -6.5468 3.4423 35 1 6.2478 -6.5029 2.8913 36 1 5.8374 -6.2105 0.0160 37 1 7.3813 -5.3496 -0.1911 38 1 7.1052 -6.3461 1.2579 39 1 9.9339 -2.2149 1.3805 40 1 3.6689 -1.6834 2.2201 41 1 5.1161 -2.2062 1.3241 42 1 4.0836 -1.5608 -0.8028 43 1 4.0087 -0.1772 0.3165 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701266569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = -83.277719 kcal Electronic energy + Delta-G solvation = -23837.720501 eV Core-core repulsion = 20496.442098 eV Total energy + Delta-G solvation = -3341.278403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.64057 -40.59971 -38.10747 -37.50893 -34.56354 -34.25758 -32.44879 -31.87166 -30.41209 -28.52315 -27.18546 -26.14655 -24.19469 -23.47126 -22.20690 -20.29306 -19.68383 -18.84419 -18.31950 -17.82972 -17.02874 -16.88307 -16.57413 -16.41419 -15.88829 -15.25964 -15.02774 -14.94409 -14.80034 -14.33341 -14.23390 -14.07246 -13.79726 -13.62921 -13.36061 -13.19191 -13.05309 -12.96031 -12.85037 -12.66051 -12.35772 -12.21839 -11.94188 -11.76851 -11.62584 -11.49234 -11.33271 -10.86873 -10.77503 -10.58908 -9.69228 -9.44462 -8.30476 -6.37882 1.34244 1.38423 1.49551 1.60620 1.67820 2.05380 2.28809 2.31154 3.04339 3.50059 3.64768 3.70827 3.89548 4.06090 4.14668 4.26082 4.31202 4.39337 4.47442 4.51857 4.54517 4.63434 4.66411 4.70493 4.74380 4.77123 4.81989 4.84686 4.90869 4.94973 5.00583 5.17375 5.19846 5.28562 5.34795 5.48767 5.52841 5.76566 6.14877 6.45257 6.66092 6.71105 7.16525 7.21345 7.33804 8.86144 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016534 B = 0.006304 C = 0.005110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.033605 B = 4440.512116 C = 5477.869949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.501 3.499 3 O -0.607 6.607 4 N -0.611 5.611 5 C 0.104 3.896 6 C -0.108 4.108 7 C -0.099 4.099 8 C 0.510 3.490 9 O -0.591 6.591 10 N -0.594 5.594 11 C 0.096 3.904 12 C 0.228 3.772 13 H 0.069 0.931 14 C -0.165 4.165 15 C -0.526 4.526 16 H 0.029 0.971 17 C 0.022 3.978 18 N -0.944 5.944 19 Si 0.938 3.062 20 H -0.263 1.263 21 H -0.227 1.227 22 H -0.303 1.303 23 C -0.125 4.125 24 C 0.118 3.882 25 H 0.113 0.887 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.096 0.904 29 H 0.131 0.869 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.113 0.887 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.267 0.733 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.083 -4.144 -9.491 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.292 3.708 3 O -0.489 6.489 4 N -0.344 5.344 5 C -0.017 4.017 6 C -0.147 4.147 7 C -0.120 4.120 8 C 0.300 3.700 9 O -0.473 6.473 10 N -0.323 5.323 11 C -0.047 4.047 12 C 0.125 3.875 13 H 0.086 0.914 14 C -0.223 4.223 15 C -0.565 4.565 16 H 0.047 0.953 17 C -0.176 4.176 18 N -0.583 5.583 19 Si 0.764 3.236 20 H -0.189 1.189 21 H -0.150 1.150 22 H -0.231 1.231 23 C -0.163 4.163 24 C -0.005 4.005 25 H 0.131 0.869 26 H 0.115 0.885 27 H 0.128 0.872 28 H 0.115 0.885 29 H 0.148 0.852 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.130 0.870 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.006 -3.696 -9.051 19.616 hybrid contribution 1.380 0.259 0.171 1.414 sum -15.627 -3.438 -8.880 18.299 Atomic orbital electron populations 1.22060 0.87853 1.06693 1.06180 1.21751 0.92589 0.82323 0.74138 1.90688 1.72171 1.33081 1.52924 1.48391 1.06975 1.07417 1.71635 1.22233 0.99089 0.81706 0.98703 1.21738 0.91919 1.01566 0.99465 1.21322 0.98738 0.94195 0.97794 1.21055 0.81189 0.80592 0.87203 1.90583 1.52796 1.62560 1.41392 1.48001 1.10618 1.41347 1.32344 1.21448 1.01096 0.91391 0.90756 1.19398 0.86826 0.93268 0.88006 0.91387 1.22439 1.00709 0.99054 1.00048 1.21304 1.05526 1.35336 0.94314 0.95314 1.25746 0.94539 0.93979 1.03383 1.70040 1.11508 1.38371 1.38371 0.86034 0.80707 0.77014 0.79886 1.18923 1.15016 1.23144 1.21906 1.01968 0.93919 0.98537 1.21440 0.80815 1.00085 0.98200 0.86923 0.88464 0.87179 0.88549 0.85184 0.88594 0.92316 0.86958 0.95339 0.91073 0.89837 0.91093 0.93419 0.92217 0.92416 0.93411 0.90136 0.89684 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.08 71.23 0.72 -1.59 16 2 C 0.50 12.76 7.80 87.65 0.68 13.45 16 3 O -0.61 -21.95 16.54 -3.03 -0.05 -22.00 16 4 N -0.61 -14.44 2.97 -818.90 -2.43 -16.87 16 5 C 0.10 1.59 6.35 86.37 0.55 2.13 16 6 C -0.11 -2.37 4.74 30.67 0.15 -2.22 16 7 C -0.10 -2.88 1.62 -11.51 -0.02 -2.90 16 8 C 0.51 18.88 6.90 87.66 0.60 19.48 16 9 O -0.59 -24.53 15.75 -3.03 -0.05 -24.58 16 10 N -0.59 -22.93 2.75 -826.78 -2.28 -25.21 16 11 C 0.10 3.48 9.77 127.77 1.25 4.73 16 12 C 0.23 9.14 1.41 44.25 0.06 9.21 16 13 H 0.07 2.58 3.57 -2.39 -0.01 2.57 16 14 C -0.16 -5.75 8.57 71.98 0.62 -5.13 16 15 C -0.53 -27.17 8.35 25.60 0.21 -26.95 16 16 H 0.03 1.74 8.04 -2.91 -0.02 1.71 16 17 C 0.02 1.18 5.45 84.66 0.46 1.64 16 18 N -0.94 -55.95 13.96 21.45 0.30 -55.65 16 19 Si 0.94 39.42 24.37 68.60 1.67 41.09 16 20 H -0.26 -10.52 6.87 99.48 0.68 -9.83 16 21 H -0.23 -8.09 6.53 99.48 0.65 -7.44 16 22 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 23 C -0.12 -4.14 4.96 30.67 0.15 -3.99 16 24 C 0.12 3.43 6.42 86.36 0.55 3.98 16 25 H 0.11 0.82 5.17 -2.39 -0.01 0.81 16 26 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.13 1.07 5.07 -2.39 -0.01 1.05 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.52 7.99 -2.39 -0.02 1.50 16 32 H 0.11 2.82 7.15 -2.39 -0.02 2.80 16 33 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.07 2.34 7.67 -2.39 -0.02 2.33 16 35 H 0.08 2.78 6.17 -2.39 -0.01 2.77 16 36 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.71 3.27 -2.39 -0.01 1.71 16 38 H 0.06 2.08 6.49 -2.39 -0.02 2.06 16 39 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 3.19 5.50 -2.39 -0.01 3.17 16 42 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 43 H 0.07 2.44 7.04 -2.39 -0.02 2.42 16 Total: -1.00 -73.94 325.83 4.09 -69.85 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.94 Total: 21.52 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.99 Total: 11.85 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -4.41 Total: -97.73 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.10 Total: -46.58 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 1.67 Total: 41.09 kcal Total: -73.94 4.09 -69.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701266569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.430 kcal (2) G-P(sol) polarization free energy of solvation -73.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds