Wall clock time and date at job start Tue Mar 31 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46505 * 109.46503 * 2 1 4 4 C 1.46497 * 119.99764 * 270.30531 * 3 2 1 5 5 C 1.50695 * 109.47590 * 273.43959 * 4 3 2 6 6 H 1.07999 * 119.99900 * 0.02562 * 5 4 3 7 7 C 1.37883 * 120.00374 * 179.97438 * 5 4 3 8 8 N 1.31509 * 119.99405 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00006 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46832 * 90.00503 * 9 7 5 11 11 H 1.48498 * 109.46767 * 210.00201 * 9 7 5 12 12 H 1.48491 * 109.47360 * 330.00484 * 9 7 5 13 13 C 1.34776 * 120.00129 * 90.31628 * 3 2 1 14 14 O 1.21281 * 120.00036 * 5.14830 * 13 3 2 15 15 C 1.50701 * 119.99991 * 185.15303 * 13 3 2 16 16 C 1.53040 * 109.45777 * 153.36712 * 15 13 3 17 17 C 1.53194 * 109.30820 * 181.38465 * 16 15 13 18 18 N 1.46918 * 108.77890 * 305.36555 * 17 16 15 19 19 C 1.34779 * 120.63651 * 233.59063 * 18 17 16 20 20 C 1.50693 * 120.00284 * 180.27649 * 19 18 17 21 21 O 1.21280 * 119.99449 * 359.97438 * 19 18 17 22 22 C 1.46931 * 118.73754 * 53.86103 * 18 17 16 23 23 C 1.53043 * 109.45744 * 273.43764 * 15 13 3 24 24 H 1.08999 * 109.47062 * 63.73591 * 1 2 3 25 25 H 1.09006 * 109.46759 * 183.72986 * 1 2 3 26 26 H 1.08999 * 109.47513 * 303.73184 * 1 2 3 27 27 H 1.08999 * 109.47256 * 239.99965 * 2 1 3 28 28 H 1.08995 * 109.47159 * 119.99345 * 2 1 3 29 29 H 1.08999 * 109.47259 * 33.44169 * 4 3 2 30 30 H 1.09002 * 109.46957 * 153.44024 * 4 3 2 31 31 H 0.97007 * 119.99277 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.45819 * 33.39479 * 15 13 3 33 33 H 1.09000 * 109.49378 * 61.43919 * 16 15 13 34 34 H 1.08995 * 109.52736 * 301.35501 * 16 15 13 35 35 H 1.09001 * 109.58305 * 185.58063 * 17 16 15 36 36 H 1.08999 * 109.70127 * 65.22588 * 17 16 15 37 37 H 1.09006 * 109.46701 * 179.72175 * 20 19 18 38 38 H 1.08997 * 109.47371 * 299.71632 * 20 19 18 39 39 H 1.08997 * 109.47208 * 59.72564 * 20 19 18 40 40 H 1.08997 * 109.58588 * 65.92627 * 22 18 17 41 41 H 1.09003 * 109.58578 * 186.35215 * 22 18 17 42 42 H 1.09001 * 109.49306 * 298.56269 * 23 15 13 43 43 H 1.08996 * 109.49893 * 58.66858 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2559 2.0741 -1.2687 5 6 3.6497 1.7697 -1.7540 6 1 4.2940 1.1242 -1.1755 7 6 4.1022 2.3142 -2.9372 8 7 3.3175 3.0997 -3.6419 9 14 5.8302 1.9373 -3.5383 10 1 5.8026 0.7249 -4.3954 11 1 6.3426 3.0879 -4.3248 12 1 6.7189 1.6994 -2.3727 13 6 2.2489 2.0146 1.1672 14 8 2.1424 1.4130 2.2148 15 6 2.6390 3.4702 1.1704 16 6 2.2091 4.1103 2.4924 17 6 2.5762 5.5975 2.4781 18 7 4.0094 5.7280 2.1824 19 6 4.8171 6.4355 2.9971 20 6 6.2838 6.5653 2.6768 21 8 4.3622 6.9722 3.9850 22 6 4.5445 5.0777 0.9784 23 6 4.1564 3.5916 1.0125 24 1 -0.3633 0.4547 -0.9216 25 1 -0.3633 -1.0256 0.0669 26 1 -0.3634 0.5706 0.8546 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.5313 1.7352 -2.0091 30 1 2.1492 3.1489 -1.1213 31 1 3.6360 3.4832 -4.4741 32 1 2.1460 3.9801 0.3427 33 1 2.7210 3.6171 3.3187 34 1 1.1315 4.0027 2.6158 35 1 2.3628 6.0359 3.4530 36 1 1.9966 6.1117 1.7114 37 1 6.7701 7.1725 3.4405 38 1 6.7400 5.5756 2.6549 39 1 6.4025 7.0418 1.7038 40 1 4.1220 5.5482 0.0906 41 1 5.6302 5.1730 0.9635 42 1 4.6498 3.1033 1.8529 43 1 4.4647 3.1150 0.0820 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701321562.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:08 Heat of formation + Delta-G solvation = -86.203045 kcal Electronic energy + Delta-G solvation = -23616.168836 eV Core-core repulsion = 20274.763581 eV Total energy + Delta-G solvation = -3341.405254 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.20511 -39.13741 -36.77656 -35.24982 -33.12773 -32.67181 -31.36970 -30.22397 -29.29186 -27.14441 -25.63149 -23.19071 -22.99589 -22.68833 -20.81837 -18.96971 -18.18710 -16.97127 -16.54837 -16.36849 -15.71799 -15.49682 -15.30046 -14.59725 -14.34121 -13.78076 -13.76749 -13.51234 -13.17940 -12.88966 -12.82856 -12.59100 -12.33244 -12.10462 -12.04856 -11.82238 -11.63291 -11.57002 -11.40583 -11.03493 -11.00529 -10.87651 -10.55212 -10.37621 -10.18809 -10.13488 -9.78709 -9.69354 -9.03219 -8.63404 -8.46393 -7.75589 -6.27760 -4.34766 2.72189 3.14105 3.15287 3.23136 3.24309 3.36740 3.89227 4.24459 4.66503 4.96298 5.04114 5.12897 5.17182 5.21935 5.33607 5.36942 5.48328 5.54291 5.60024 5.73850 5.78132 5.81521 5.85922 5.91211 5.98739 6.02296 6.11206 6.24549 6.30789 6.41159 6.54054 6.56875 6.61730 6.77027 6.82212 7.13218 7.49565 7.53352 7.67334 7.97047 8.26310 8.31614 8.70852 8.98985 9.32587 10.78412 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012921 B = 0.006714 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.492788 B = 4169.271818 C = 5807.681089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.595 5.595 4 C 0.235 3.765 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.520 3.480 14 O -0.575 6.575 15 C -0.099 4.099 16 C -0.114 4.114 17 C 0.112 3.888 18 N -0.610 5.610 19 C 0.512 3.488 20 C -0.174 4.174 21 O -0.559 6.559 22 C 0.109 3.891 23 C -0.129 4.129 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.266 0.734 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.054 3.099 5.048 6.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.010 4.010 3 N -0.325 5.325 4 C 0.115 3.885 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.308 3.692 14 O -0.456 6.456 15 C -0.120 4.120 16 C -0.153 4.153 17 C -0.010 4.010 18 N -0.343 5.343 19 C 0.301 3.699 20 C -0.234 4.234 21 O -0.438 6.438 22 C -0.013 4.013 23 C -0.167 4.167 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.081 0.919 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.746 3.173 5.895 6.736 hybrid contribution 0.912 -0.313 -0.833 1.274 sum 1.658 2.860 5.062 6.045 Atomic orbital electron populations 1.22108 0.96946 1.01199 1.01817 1.21221 0.93271 0.84057 1.02457 1.48260 1.63000 1.13411 1.07801 1.19483 0.96791 0.92978 0.79274 1.21450 0.98936 1.30406 1.06634 0.92027 1.24924 0.97697 0.94758 0.96232 1.69920 1.36212 1.31505 1.14974 0.86586 0.84283 0.78113 0.79079 1.20536 1.21018 1.19659 1.20416 0.76415 0.88986 0.83340 1.90581 1.54638 1.68354 1.32068 1.21201 0.98105 0.93630 0.99106 1.21756 1.01615 0.94281 0.97643 1.21607 0.80432 0.96546 1.02428 1.48259 1.09145 1.51369 1.25561 1.20775 0.89074 0.77721 0.82351 1.21937 0.92696 1.04430 1.04313 1.90673 1.77293 1.47944 1.27909 1.21948 0.99423 0.93230 0.86724 1.22062 0.93826 0.95592 1.05256 0.92595 0.92463 0.92994 0.90498 0.91155 0.94887 0.94021 0.92458 0.88467 0.90755 0.90905 0.89138 0.91447 0.89344 0.89298 0.89359 0.90361 0.89555 0.91928 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 10.24 37.16 0.38 -2.14 16 2 C 0.11 2.04 6.19 -4.04 -0.02 2.02 16 3 N -0.59 -11.90 2.46 -175.06 -0.43 -12.33 16 4 C 0.23 5.14 4.94 -5.20 -0.03 5.11 16 5 C -0.54 -12.68 7.40 -34.44 -0.25 -12.93 16 6 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.07 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -22.69 13.29 55.43 0.74 -21.95 16 9 Si 0.89 19.04 29.54 -169.99 -5.02 14.02 16 10 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 12 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.52 10.36 6.76 -10.99 -0.07 10.28 16 14 O -0.58 -12.72 15.70 5.56 0.09 -12.64 16 15 C -0.10 -1.69 1.74 -91.73 -0.16 -1.85 16 16 C -0.11 -1.76 4.89 -26.61 -0.13 -1.89 16 17 C 0.11 1.58 6.43 -3.71 -0.02 1.56 16 18 N -0.61 -8.59 2.97 -172.51 -0.51 -9.11 16 19 C 0.51 7.42 7.81 -10.99 -0.09 7.34 16 20 C -0.17 -1.78 8.67 36.00 0.31 -1.47 16 21 O -0.56 -10.12 16.50 5.56 0.09 -10.03 16 22 C 0.11 1.46 6.37 -3.48 -0.02 1.44 16 23 C -0.13 -2.08 5.33 -26.38 -0.14 -2.22 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.07 1.30 7.35 -51.93 -0.38 0.91 16 29 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 30 H 0.04 0.93 5.66 -51.93 -0.29 0.63 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.10 1.67 6.12 -51.93 -0.32 1.35 16 33 H 0.07 1.27 7.91 -51.93 -0.41 0.86 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.33 7.01 -51.93 -0.36 0.97 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.09 0.80 7.70 -51.93 -0.40 0.40 16 39 H 0.09 0.75 7.93 -51.93 -0.41 0.34 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.09 0.96 5.94 -51.93 -0.31 0.65 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.11 2.13 5.84 -51.93 -0.30 1.82 16 LS Contribution 342.84 15.07 5.17 5.17 Total: -1.00 -29.06 342.84 -7.18 -36.25 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.96 Total: 3.83 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -0.35 Total: 6.79 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.21 Total: -43.39 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.18 Total: -22.66 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.06 -7.18 -36.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701321562.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.954 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds