Wall clock time and date at job start Tue Mar 31 2020 05:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47090 * 2 1 4 4 C 1.50699 * 109.46746 * 240.00024 * 2 1 3 5 5 O 1.21277 * 120.00222 * 246.46839 * 4 2 1 6 6 N 1.34780 * 119.99725 * 66.47624 * 4 2 1 7 7 C 1.46958 * 120.59508 * 3.16002 * 6 4 2 8 8 C 1.53815 * 108.39843 * 124.76406 * 7 6 4 9 9 N 1.46961 * 108.58125 * 49.63531 * 8 7 6 10 10 C 1.36934 * 120.59769 * 124.62802 * 9 8 7 11 11 H 1.07994 * 120.00473 * 211.32355 * 10 9 8 12 12 C 1.38811 * 119.99585 * 31.31861 * 10 9 8 13 13 N 1.31624 * 120.00231 * 11.06424 * 12 10 9 14 14 Si 1.86799 * 119.99880 * 191.05744 * 12 10 9 15 15 H 1.48500 * 109.47293 * 60.00600 * 14 12 10 16 16 H 1.48503 * 109.47245 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47269 * 300.00190 * 14 12 10 18 18 C 1.46971 * 118.80923 * 304.64914 * 9 8 7 19 19 C 1.46966 * 120.59110 * 183.44626 * 6 4 2 20 20 C 1.53004 * 109.47060 * 120.00292 * 2 1 3 21 21 H 1.08999 * 110.67163 * 177.02979 * 20 2 1 22 22 C 1.54994 * 110.61691 * 299.99840 * 20 2 1 23 23 C 1.54812 * 102.12079 * 155.54003 * 22 20 2 24 24 C 1.54099 * 104.19052 * 339.10010 * 23 22 20 25 25 O 1.43746 * 107.29201 * 357.97259 * 24 23 22 26 26 H 1.09000 * 109.47097 * 65.83373 * 1 2 3 27 27 H 1.08994 * 109.47469 * 185.83650 * 1 2 3 28 28 H 1.09005 * 109.46945 * 305.83500 * 1 2 3 29 29 H 1.09001 * 109.61172 * 244.54165 * 7 6 4 30 30 H 1.08998 * 109.60862 * 5.05463 * 7 6 4 31 31 H 1.09002 * 109.73657 * 289.85006 * 8 7 6 32 32 H 1.08997 * 109.53330 * 169.30507 * 8 7 6 33 33 H 0.97003 * 120.00184 * 179.97438 * 13 12 10 34 34 H 1.08996 * 109.61369 * 295.47819 * 18 9 8 35 35 H 1.09004 * 109.60368 * 174.96752 * 18 9 8 36 36 H 1.08997 * 109.61307 * 354.94244 * 19 6 4 37 37 H 1.08996 * 109.61429 * 115.45622 * 19 6 4 38 38 H 1.08999 * 110.90732 * 37.32713 * 22 20 2 39 39 H 1.08991 * 110.90643 * 273.75759 * 22 20 2 40 40 H 1.08999 * 110.48698 * 97.77789 * 23 22 20 41 41 H 1.09000 * 110.48716 * 220.29231 * 23 22 20 42 42 H 1.09002 * 109.87765 * 117.39065 * 24 23 22 43 43 H 1.08992 * 109.87879 * 238.39448 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.6297 -1.7603 -1.1232 6 7 1.8176 -0.1788 -2.4503 7 6 1.1565 1.1260 -2.5918 8 6 2.0719 2.0472 -3.4160 9 7 2.4892 1.3294 -4.6286 10 6 2.2703 1.8690 -5.8680 11 1 2.0897 1.2227 -6.7141 12 6 2.2804 3.2468 -6.0368 13 7 2.7113 4.0255 -5.0670 14 14 1.6828 3.9957 -7.6403 15 1 0.2645 3.6173 -7.8651 16 1 1.7954 5.4747 -7.5681 17 1 2.5138 3.4907 -8.7626 18 6 3.1452 0.0219 -4.4873 19 6 2.2348 -0.8967 -3.6629 20 6 2.0400 -0.7213 1.2492 21 1 3.1285 -0.7788 1.2430 22 6 1.5381 -0.0115 2.5324 23 6 1.5796 -1.1559 3.5743 24 6 1.5585 -2.4413 2.7247 25 8 1.4614 -2.0415 1.3473 26 1 -0.3633 0.4207 -0.9376 27 1 -0.3634 -1.0223 0.1045 28 1 -0.3633 0.6017 0.8332 29 1 0.2031 0.9995 -3.1047 30 1 0.9897 1.5603 -1.6061 31 1 2.9504 2.3144 -2.8286 32 1 1.5265 2.9490 -3.6940 33 1 2.7187 4.9882 -5.1850 34 1 4.1001 0.1450 -3.9763 35 1 3.3085 -0.4138 -5.4730 36 1 2.7802 -1.7985 -3.3849 37 1 1.3564 -1.1640 -4.2503 38 1 0.5210 0.3575 2.4003 39 1 2.2098 0.7982 2.8170 40 1 2.4954 -1.1027 4.1630 41 1 0.7060 -1.1116 4.2246 42 1 2.4777 -3.0053 2.8829 43 1 0.6977 -3.0517 2.9974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720618529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:04 Heat of formation + Delta-G solvation = -53.323739 kcal Electronic energy + Delta-G solvation = -23513.630401 eV Core-core repulsion = 20173.650901 eV Total energy + Delta-G solvation = -3339.979500 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22845 -38.86912 -36.65633 -34.15133 -33.48669 -32.02190 -31.17145 -30.07218 -28.02615 -26.91422 -25.00789 -23.54814 -22.84938 -21.89449 -21.13289 -19.86017 -18.48632 -17.05706 -16.74535 -16.12987 -15.76086 -15.41714 -14.91020 -14.74732 -14.59416 -13.82822 -13.72983 -13.64680 -13.31635 -13.16366 -13.12882 -12.53180 -12.01955 -11.92453 -11.82088 -11.58480 -11.46030 -11.23556 -11.11408 -11.00330 -10.83839 -10.71692 -10.65753 -10.45942 -10.19165 -10.02780 -9.83478 -9.55909 -9.12821 -8.58330 -8.15070 -6.65246 -5.85071 -3.34523 3.11839 3.34534 3.39882 3.40548 3.50813 3.86588 4.42115 4.43605 4.57857 4.80650 4.86709 4.99225 5.08935 5.22938 5.29527 5.34439 5.35285 5.52464 5.58763 5.63798 5.65659 5.81567 5.81875 5.87427 5.87839 5.93820 6.00017 6.09138 6.15747 6.27224 6.28882 6.43275 6.49545 6.82669 6.96731 7.00218 7.26111 7.50477 7.71297 8.02149 8.38882 8.70334 9.13564 9.74241 10.32986 11.22083 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037152 B = 0.003935 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.470482 B = 7113.368752 C = 7507.405799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 H 0.106 0.894 4 C 0.515 3.485 5 O -0.546 6.546 6 N -0.598 5.598 7 C 0.078 3.922 8 C 0.158 3.842 9 N -0.592 5.592 10 C -0.255 4.255 11 H 0.066 0.934 12 C 0.005 3.995 13 N -0.906 5.906 14 Si 0.907 3.093 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.282 1.282 18 C 0.132 3.868 19 C 0.096 3.904 20 C 0.100 3.900 21 H 0.073 0.927 22 C -0.155 4.155 23 C -0.155 4.155 24 C 0.045 3.955 25 O -0.354 6.354 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.022 0.978 32 H 0.101 0.899 33 H 0.256 0.744 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 -6.216 15.042 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.124 0.876 4 C 0.302 3.698 5 O -0.424 6.424 6 N -0.331 5.331 7 C -0.047 4.047 8 C 0.031 3.969 9 N -0.314 5.314 10 C -0.385 4.385 11 H 0.083 0.917 12 C -0.194 4.194 13 N -0.550 5.550 14 Si 0.737 3.263 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.208 1.208 18 C 0.005 3.995 19 C -0.028 4.028 20 C 0.042 3.958 21 H 0.091 0.909 22 C -0.193 4.193 23 C -0.193 4.193 24 C -0.033 4.033 25 O -0.273 6.273 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.323 -6.699 14.885 16.886 hybrid contribution -0.153 0.705 -0.608 0.943 sum -4.476 -5.994 14.277 16.118 Atomic orbital electron populations 1.21851 0.92428 1.03358 1.02610 1.21332 0.98493 1.00244 0.92511 0.87615 1.20353 0.79633 0.85406 0.84372 1.90655 1.42020 1.23436 1.86255 1.48032 1.58797 1.20838 1.05441 1.22870 0.97373 0.83739 1.00683 1.21297 0.95209 0.94181 0.86206 1.43935 1.66923 1.17860 1.02721 1.19171 1.42854 0.89917 0.86531 0.91669 1.25169 0.99566 0.96991 0.97633 1.69940 1.48828 1.03715 1.32528 0.86304 0.78825 0.77980 0.83223 1.20913 1.21564 1.20825 1.21309 0.93265 0.87426 0.97494 1.22160 0.99278 0.95868 0.85469 1.22832 0.97438 0.82657 0.92847 0.90901 1.23283 1.03012 0.98273 0.94723 1.22918 1.02733 0.95041 0.98586 1.23090 1.01399 0.96305 0.82464 1.89020 1.81361 1.32374 1.24517 0.91380 0.91304 0.91741 0.91959 0.90834 0.95943 0.88067 0.93429 0.95916 0.91656 0.90100 0.92187 0.89862 0.90151 0.90898 0.90685 0.92742 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.27 37.16 0.31 -1.46 16 2 C -0.10 -1.46 1.84 -91.77 -0.17 -1.63 16 3 H 0.11 1.34 7.23 -51.93 -0.38 0.96 16 4 C 0.51 9.40 6.94 -10.98 -0.08 9.32 16 5 O -0.55 -11.65 14.89 -9.33 -0.14 -11.78 16 6 N -0.60 -11.18 2.94 -172.22 -0.51 -11.68 16 7 C 0.08 1.39 5.13 -3.37 -0.02 1.38 16 8 C 0.16 3.57 5.48 -3.37 -0.02 3.55 16 9 N -0.59 -14.54 2.96 -171.76 -0.51 -15.05 16 10 C -0.26 -6.81 9.58 -15.06 -0.14 -6.95 16 11 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 12 C 0.01 0.14 5.04 -17.43 -0.09 0.05 16 13 N -0.91 -25.29 11.03 55.49 0.61 -24.68 16 14 Si 0.91 21.06 29.57 -169.99 -5.03 16.04 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.13 2.84 6.67 -3.59 -0.02 2.81 16 19 C 0.10 1.85 6.60 -3.60 -0.02 1.83 16 20 C 0.10 1.33 2.54 -25.68 -0.07 1.26 16 21 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 22 C -0.16 -1.48 6.48 -24.72 -0.16 -1.64 16 23 C -0.15 -1.32 7.01 -25.20 -0.18 -1.50 16 24 C 0.04 0.48 7.70 37.73 0.29 0.77 16 25 O -0.35 -5.29 9.50 -50.12 -0.48 -5.76 16 26 H 0.07 0.85 5.83 -51.93 -0.30 0.54 16 27 H 0.07 0.93 7.40 -51.93 -0.38 0.54 16 28 H 0.06 0.63 6.44 -51.93 -0.33 0.29 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.10 4.90 -51.93 -0.25 0.84 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 2.52 6.02 -51.93 -0.31 2.20 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 36 H 0.08 1.55 6.99 -51.93 -0.36 1.18 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 0.74 6.02 -51.93 -0.31 0.43 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 327.80 15.07 4.94 4.94 Total: -1.00 -31.51 327.80 -8.29 -39.80 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.82 Total: 0.38 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.36 Total: 7.79 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.40 Total: -51.41 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -0.62 Total: -17.55 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.51 -8.29 -39.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720618529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.525 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds