Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.50697 * 109.47349 * 240.00289 * 2 1 3 5 5 O 1.21278 * 120.00061 * 248.53829 * 4 2 1 6 6 N 1.34786 * 120.00134 * 68.53193 * 4 2 1 7 7 C 1.46957 * 120.59086 * 355.13046 * 6 4 2 8 8 C 1.53372 * 108.63689 * 124.74839 * 7 6 4 9 9 N 1.46972 * 108.77405 * 49.33542 * 8 7 6 10 10 C 1.36938 * 120.59248 * 124.83924 * 9 8 7 11 11 H 1.07999 * 119.99818 * 332.26683 * 10 9 8 12 12 C 1.38808 * 119.99700 * 152.26963 * 10 9 8 13 13 N 1.31620 * 120.00444 * 340.73127 * 12 10 9 14 14 Si 1.86803 * 119.99931 * 160.73047 * 12 10 9 15 15 H 1.48501 * 109.46719 * 60.00030 * 14 12 10 16 16 H 1.48501 * 109.47156 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47384 * 300.00045 * 14 12 10 18 18 C 1.47001 * 118.79074 * 305.07647 * 9 8 7 19 19 C 1.46957 * 120.59155 * 175.10373 * 6 4 2 20 20 C 1.52998 * 109.47509 * 119.99732 * 2 1 3 21 21 H 1.08999 * 109.82088 * 60.57001 * 20 2 1 22 22 C 1.54383 * 109.83296 * 299.59184 * 20 2 1 23 23 C 1.55301 * 102.25179 * 219.12870 * 22 20 2 24 24 C 1.54945 * 100.94388 * 34.13373 * 23 22 20 25 25 O 1.43236 * 109.83187 * 181.45740 * 20 2 1 26 26 H 1.09006 * 109.46403 * 172.87372 * 1 2 3 27 27 H 1.08994 * 109.47142 * 292.86810 * 1 2 3 28 28 H 1.08994 * 109.47266 * 52.87655 * 1 2 3 29 29 H 1.08998 * 109.61445 * 5.00434 * 7 6 4 30 30 H 1.09003 * 109.61294 * 244.49058 * 7 6 4 31 31 H 1.09000 * 109.61371 * 169.16370 * 8 7 6 32 32 H 1.09001 * 109.61059 * 289.50714 * 8 7 6 33 33 H 0.96997 * 120.00357 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46458 * 295.18363 * 18 9 8 35 35 H 1.08991 * 109.75804 * 174.83661 * 18 9 8 36 36 H 1.08998 * 109.61508 * 354.99337 * 19 6 4 37 37 H 1.09004 * 109.61208 * 115.50849 * 19 6 4 38 38 H 1.09001 * 110.84406 * 337.31774 * 22 20 2 39 39 H 1.08993 * 110.84981 * 100.93611 * 22 20 2 40 40 H 1.08997 * 111.12420 * 276.20775 * 23 22 20 41 41 H 1.09000 * 111.16229 * 152.06508 * 23 22 20 42 42 H 1.09000 * 110.31033 * 204.64284 * 24 23 22 43 43 H 1.09001 * 110.39333 * 82.51416 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.5968 -1.7786 -1.1259 6 7 1.8543 -0.1584 -2.4472 7 6 1.0799 1.0812 -2.6000 8 6 1.9497 2.1163 -3.3240 9 7 2.5303 1.4920 -4.5212 10 6 2.3519 2.0548 -5.7568 11 1 1.4748 2.6524 -5.9563 12 6 3.2984 1.8569 -6.7527 13 7 4.5165 1.4719 -6.4359 14 14 2.8433 2.1372 -8.5426 15 1 2.4150 3.5468 -8.7295 16 1 4.0222 1.8604 -9.4022 17 1 1.7312 1.2279 -8.9189 18 6 3.3015 0.2499 -4.3685 19 6 2.4316 -0.7852 -3.6445 20 6 2.0401 -0.7212 1.2492 21 1 1.6883 -1.7528 1.2500 22 6 1.5386 0.0061 2.5153 23 6 2.7719 -0.0802 3.4552 24 6 3.9300 0.0219 2.4310 25 8 3.4720 -0.6960 1.2742 26 1 -0.3632 -1.0198 -0.1275 27 1 -0.3633 0.3993 0.9468 28 1 -0.3633 0.6202 -0.8193 29 1 0.8002 1.4614 -1.6175 30 1 0.1831 0.8823 -3.1869 31 1 1.3367 2.9688 -3.6168 32 1 2.7484 2.4504 -2.6618 33 1 5.1780 1.3340 -7.1318 34 1 4.1982 0.4488 -3.7816 35 1 3.5836 -0.1316 -5.3498 36 1 3.0446 -1.6376 -3.3518 37 1 1.6311 -1.1171 -4.3058 38 1 1.2914 1.0444 2.2940 39 1 0.6839 -0.5135 2.9482 40 1 2.7973 -1.0333 3.9834 41 1 2.7921 0.7548 4.1555 42 1 4.8314 -0.4418 2.8316 43 1 4.1223 1.0645 2.1777 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720618530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = -52.251791 kcal Electronic energy + Delta-G solvation = -23577.026480 eV Core-core repulsion = 20237.093463 eV Total energy + Delta-G solvation = -3339.933017 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.27632 -38.87182 -36.66581 -34.29076 -33.52312 -32.01752 -31.13366 -30.19002 -28.07009 -26.94717 -24.80134 -23.41432 -22.88583 -22.02608 -21.23171 -19.89666 -18.53195 -17.35266 -16.65488 -16.22524 -15.81470 -15.42569 -15.02507 -14.71354 -14.16396 -13.82307 -13.66043 -13.54137 -13.43167 -13.27852 -12.98282 -12.64818 -12.33585 -12.10276 -11.73844 -11.56709 -11.42075 -11.25169 -11.16735 -11.15157 -10.92595 -10.74728 -10.68219 -10.53648 -10.21283 -9.91433 -9.80688 -9.43930 -9.11046 -8.55110 -8.13179 -6.68678 -5.82706 -3.26448 3.13953 3.36550 3.43128 3.43619 3.52217 3.83574 4.32683 4.45840 4.54194 4.72300 4.81853 5.00273 5.09309 5.17742 5.21395 5.32509 5.34376 5.46463 5.50590 5.55302 5.62076 5.68378 5.72633 5.77530 5.81621 5.86522 5.90528 6.02653 6.18336 6.22832 6.39565 6.43177 6.55591 6.73594 6.93901 7.12914 7.31972 7.57226 7.74455 8.03487 8.38013 8.73029 9.14011 9.77652 10.34857 11.24896 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033643 B = 0.004044 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.057736 B = 6921.445096 C = 7087.619529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 H 0.096 0.904 4 C 0.518 3.482 5 O -0.544 6.544 6 N -0.599 5.599 7 C 0.085 3.915 8 C 0.130 3.870 9 N -0.590 5.590 10 C -0.260 4.260 11 H 0.067 0.933 12 C 0.005 3.995 13 N -0.898 5.898 14 Si 0.903 3.097 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.159 3.841 19 C 0.089 3.911 20 C 0.103 3.897 21 H 0.085 0.915 22 C -0.151 4.151 23 C -0.156 4.156 24 C 0.045 3.955 25 O -0.359 6.359 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.256 0.744 34 H 0.023 0.977 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.947 -1.138 17.606 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.144 4.144 3 H 0.114 0.886 4 C 0.306 3.694 5 O -0.421 6.421 6 N -0.332 5.332 7 C -0.040 4.040 8 C 0.003 3.997 9 N -0.313 5.313 10 C -0.390 4.390 11 H 0.084 0.916 12 C -0.194 4.194 13 N -0.542 5.542 14 Si 0.732 3.268 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.210 1.210 18 C 0.033 3.967 19 C -0.035 4.035 20 C 0.045 3.955 21 H 0.103 0.897 22 C -0.188 4.188 23 C -0.194 4.194 24 C -0.032 4.032 25 O -0.278 6.278 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.351 -1.814 17.353 18.933 hybrid contribution -0.255 0.438 -0.859 0.998 sum -7.606 -1.376 16.494 18.215 Atomic orbital electron populations 1.21948 0.92525 1.03180 1.03096 1.21711 0.97383 1.01224 0.94076 0.88595 1.20286 0.79422 0.85567 0.84166 1.90651 1.43296 1.22098 1.86099 1.48016 1.52695 1.25710 1.06767 1.22527 0.95093 0.85943 1.00451 1.21283 0.95160 0.93553 0.89737 1.43973 1.61640 1.23654 1.02065 1.19131 1.02511 1.29891 0.87419 0.91562 1.25049 0.94405 1.00975 0.98963 1.70043 1.01779 1.50314 1.32057 0.86370 0.77375 0.78143 0.84872 1.20849 1.21596 1.20951 1.21162 0.90940 0.84753 0.99847 1.22450 0.98025 0.97675 0.85339 1.22489 0.81569 0.99321 0.92143 0.89682 1.23223 0.98687 1.01761 0.95152 1.23265 0.94844 1.02954 0.98320 1.23401 0.97268 0.96911 0.85643 1.88647 1.19524 1.75252 1.44371 0.91985 0.91453 0.90731 0.90401 0.91719 0.91658 0.96017 0.93409 0.95910 0.88556 0.90233 0.92428 0.90204 0.89945 0.90450 0.90079 0.89951 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.66 37.16 0.32 -1.21 16 2 C -0.12 -1.65 1.53 -91.77 -0.14 -1.79 16 3 H 0.10 1.26 7.50 -51.92 -0.39 0.87 16 4 C 0.52 9.56 6.81 -10.98 -0.07 9.49 16 5 O -0.54 -11.94 14.96 -7.76 -0.12 -12.06 16 6 N -0.60 -11.34 2.95 -172.49 -0.51 -11.85 16 7 C 0.08 1.40 5.51 -3.60 -0.02 1.38 16 8 C 0.13 2.62 6.67 -3.59 -0.02 2.59 16 9 N -0.59 -14.68 2.98 -172.00 -0.51 -15.19 16 10 C -0.26 -7.01 9.57 -15.06 -0.14 -7.15 16 11 H 0.07 1.73 7.90 -52.49 -0.41 1.31 16 12 C 0.01 0.15 4.86 -17.43 -0.08 0.06 16 13 N -0.90 -26.07 11.30 55.49 0.63 -25.44 16 14 Si 0.90 21.40 29.60 -169.99 -5.03 16.37 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.16 3.92 5.52 -3.57 -0.02 3.90 16 19 C 0.09 1.87 6.59 -3.60 -0.02 1.85 16 20 C 0.10 1.34 2.59 -26.01 -0.07 1.28 16 21 H 0.09 1.19 8.00 -51.93 -0.42 0.78 16 22 C -0.15 -1.32 5.34 -24.79 -0.13 -1.45 16 23 C -0.16 -1.30 7.16 -24.48 -0.18 -1.48 16 24 C 0.04 0.50 7.78 38.18 0.30 0.80 16 25 O -0.36 -5.69 10.25 -48.55 -0.50 -6.18 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 27 H 0.07 0.52 6.86 -51.93 -0.36 0.16 16 28 H 0.07 0.74 5.48 -51.93 -0.28 0.46 16 29 H 0.08 1.01 4.30 -51.93 -0.22 0.79 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 2.59 6.04 -51.93 -0.31 2.28 16 36 H 0.08 1.71 7.02 -51.93 -0.36 1.35 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.08 0.63 7.61 -51.93 -0.40 0.23 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 330.29 15.07 4.98 4.98 Total: -1.00 -33.02 330.29 -8.28 -41.30 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -6.93 Total: -0.17 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -0.29 Total: 8.24 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.39 Total: -52.48 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.61 Total: -18.24 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.02 -8.28 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720618530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.950 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds