Wall clock time and date at job start Tue Mar 31 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47243 * 2 1 4 4 C 1.50708 * 109.47152 * 119.99726 * 2 1 3 5 5 O 1.21280 * 120.00008 * 95.02187 * 4 2 1 6 6 N 1.34779 * 119.99891 * 275.02328 * 4 2 1 7 7 C 1.46964 * 120.59133 * 4.55441 * 6 4 2 8 8 C 1.53807 * 108.39839 * 124.76211 * 7 6 4 9 9 N 1.46958 * 108.58385 * 49.63017 * 8 7 6 10 10 C 1.36937 * 120.59742 * 124.63025 * 9 8 7 11 11 H 1.08004 * 120.00102 * 208.50331 * 10 9 8 12 12 C 1.38807 * 119.99728 * 28.49251 * 10 9 8 13 13 N 1.31622 * 120.00021 * 217.22995 * 12 10 9 14 14 Si 1.86806 * 120.00215 * 37.22996 * 12 10 9 15 15 H 1.48504 * 109.46644 * 95.26298 * 14 12 10 16 16 H 1.48491 * 109.47307 * 215.26473 * 14 12 10 17 17 H 1.48496 * 109.46891 * 335.26561 * 14 12 10 18 18 C 1.46966 * 118.81310 * 304.65348 * 9 8 7 19 19 C 1.46962 * 120.59145 * 184.83261 * 6 4 2 20 20 C 1.53000 * 109.47347 * 239.99879 * 2 1 3 21 21 H 1.09006 * 110.67338 * 301.50750 * 20 2 1 22 22 C 1.55223 * 110.64663 * 64.36914 * 20 2 1 23 23 C 1.54808 * 101.98842 * 155.43700 * 22 20 2 24 24 C 1.54100 * 104.30485 * 339.26179 * 23 22 20 25 25 O 1.43739 * 107.29625 * 357.90492 * 24 23 22 26 26 H 1.08993 * 109.47285 * 298.80967 * 1 2 3 27 27 H 1.09001 * 109.46763 * 58.81544 * 1 2 3 28 28 H 1.09009 * 109.46807 * 178.80909 * 1 2 3 29 29 H 1.09005 * 109.60605 * 244.53793 * 7 6 4 30 30 H 1.08997 * 109.61450 * 5.04763 * 7 6 4 31 31 H 1.09011 * 109.73815 * 289.84120 * 8 7 6 32 32 H 1.08998 * 109.53912 * 169.30035 * 8 7 6 33 33 H 0.97003 * 119.99873 * 180.02562 * 13 12 10 34 34 H 1.09003 * 109.60797 * 295.47647 * 18 9 8 35 35 H 1.08999 * 109.61491 * 174.97267 * 18 9 8 36 36 H 1.08998 * 109.61202 * 354.94469 * 19 6 4 37 37 H 1.08999 * 109.60827 * 115.45952 * 19 6 4 38 38 H 1.09002 * 110.89012 * 37.29766 * 22 20 2 39 39 H 1.08999 * 111.01896 * 273.63275 * 22 20 2 40 40 H 1.09002 * 110.48592 * 220.52037 * 23 22 20 41 41 H 1.09000 * 110.48559 * 98.00790 * 23 22 20 42 42 H 1.08997 * 109.87639 * 117.33267 * 24 23 22 43 43 H 1.09006 * 109.87544 * 238.32750 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.3212 -1.8870 1.1761 6 7 2.1606 -0.0381 2.3916 7 6 1.7213 1.3603 2.4986 8 6 0.7242 1.4680 3.6647 9 7 1.3113 0.8178 4.8446 10 6 1.4424 1.5011 6.0240 11 1 2.2345 1.2441 6.7119 12 6 0.5575 2.5242 6.3354 13 7 0.9888 3.6003 6.9587 14 14 -1.2453 2.3738 5.8701 15 1 -2.0125 1.8449 7.0264 16 1 -1.7731 3.7102 5.4955 17 1 -1.3836 1.4464 4.7185 18 6 1.7557 -0.5788 4.7360 19 6 2.7478 -0.6883 3.5715 20 6 2.0400 -0.7213 -1.2492 21 1 1.6658 -1.7445 -1.2825 22 6 1.6301 0.0501 -2.5323 23 6 2.7080 -0.4114 -3.5431 24 6 3.8652 -0.9185 -2.6608 25 8 3.4832 -0.7062 -1.2915 26 1 -0.3633 0.4952 0.9004 27 1 -0.3633 0.5321 -0.8792 28 1 -0.3633 -1.0275 -0.0214 29 1 2.5825 2.0006 2.6899 30 1 1.2360 1.6634 1.5709 31 1 -0.2085 0.9702 3.3988 32 1 0.5315 2.5183 3.8837 33 1 0.3703 4.3151 7.1766 34 1 0.8966 -1.2224 4.5464 35 1 2.2443 -0.8805 5.6624 36 1 2.9404 -1.7386 3.3525 37 1 3.6803 -0.1905 3.8374 38 1 1.6828 1.1270 -2.3719 39 1 0.6344 -0.2440 -2.8640 40 1 3.0365 0.4256 -4.1593 41 1 2.3240 -1.2170 -4.1690 42 1 4.0292 -1.9811 -2.8394 43 1 4.7743 -0.3604 -2.8852 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720618532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:09 Heat of formation + Delta-G solvation = -49.596794 kcal Electronic energy + Delta-G solvation = -23579.785837 eV Core-core repulsion = 20239.967949 eV Total energy + Delta-G solvation = -3339.817888 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.30713 -39.00997 -36.92578 -34.24702 -33.69701 -32.11976 -31.50936 -30.55166 -28.18607 -27.20864 -24.81251 -23.45272 -23.17173 -22.15237 -21.25335 -20.24887 -18.54605 -17.47430 -16.51528 -16.33708 -15.99534 -15.53539 -15.21904 -14.85459 -14.52838 -14.27073 -13.88044 -13.74480 -13.47323 -13.16435 -12.95212 -12.62680 -12.36486 -12.17841 -12.13608 -11.85521 -11.77195 -11.73922 -11.26863 -11.11470 -10.99350 -10.82569 -10.76416 -10.48110 -10.34757 -10.16918 -9.69785 -9.53398 -9.28074 -8.67365 -8.17873 -6.98375 -6.12194 -3.31430 2.98211 3.32133 3.36925 3.47111 3.52057 3.69170 4.34288 4.44887 4.51002 4.68702 4.75135 4.84843 4.88809 5.03362 5.13729 5.21507 5.22170 5.37592 5.49979 5.52301 5.56550 5.60532 5.63292 5.66106 5.72043 5.80065 5.86539 5.92847 5.94231 6.07926 6.11809 6.17484 6.31210 6.52903 6.60139 6.77470 6.84464 7.00008 7.84524 7.88976 8.24532 8.55251 8.87955 9.65414 10.07138 11.02460 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029537 B = 0.004443 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.744143 B = 6300.058688 C = 6680.726719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.099 0.901 4 C 0.522 3.478 5 O -0.550 6.550 6 N -0.599 5.599 7 C 0.084 3.916 8 C 0.132 3.868 9 N -0.599 5.599 10 C -0.276 4.276 11 H 0.081 0.919 12 C 0.042 3.958 13 N -0.877 5.877 14 Si 0.835 3.165 15 H -0.292 1.292 16 H -0.294 1.294 17 H -0.259 1.259 18 C 0.132 3.868 19 C 0.096 3.904 20 C 0.097 3.903 21 H 0.079 0.921 22 C -0.150 4.150 23 C -0.156 4.156 24 C 0.046 3.954 25 O -0.366 6.366 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.263 0.737 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 -5.421 -19.829 20.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.117 0.883 4 C 0.310 3.690 5 O -0.428 6.428 6 N -0.332 5.332 7 C -0.041 4.041 8 C 0.005 3.995 9 N -0.322 5.322 10 C -0.403 4.403 11 H 0.099 0.901 12 C -0.160 4.160 13 N -0.517 5.517 14 Si 0.661 3.339 15 H -0.219 1.219 16 H -0.220 1.220 17 H -0.183 1.183 18 C 0.006 3.994 19 C -0.027 4.027 20 C 0.040 3.960 21 H 0.097 0.903 22 C -0.188 4.188 23 C -0.194 4.194 24 C -0.031 4.031 25 O -0.285 6.285 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.855 -5.838 -19.545 20.416 hybrid contribution -1.225 0.150 -0.260 1.261 sum -0.370 -5.688 -19.805 20.609 Atomic orbital electron populations 1.21755 0.91735 1.03244 1.03292 1.21337 0.97689 1.01054 0.92658 0.88263 1.20287 0.77710 0.86969 0.84025 1.90630 1.51369 1.15926 1.84889 1.47988 1.60937 1.13541 1.10686 1.22637 0.99852 0.81497 1.00068 1.21754 0.93224 0.98214 0.86262 1.44260 1.72416 1.07827 1.07700 1.18764 1.10617 1.13678 0.97246 0.90098 1.25257 0.97872 0.95622 0.97237 1.70129 1.34506 1.04555 1.42498 0.87555 0.89725 0.77445 0.79155 1.21916 1.22042 1.18334 1.21360 0.95288 0.86615 0.96161 1.22172 0.96957 0.98137 0.85472 1.22974 0.81486 0.98754 0.92828 0.90335 1.23242 0.99335 1.01358 0.94848 1.22931 0.96159 1.01657 0.98629 1.23104 0.97736 1.00232 0.81994 1.88961 1.20531 1.93667 1.25330 0.90983 0.91213 0.91711 0.91019 0.90651 0.95082 0.90471 0.92699 0.95666 0.90799 0.89786 0.91622 0.90228 0.89969 0.90530 0.90760 0.92557 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.73 37.16 0.32 -1.24 16 2 C -0.11 -1.39 1.64 -91.77 -0.15 -1.54 16 3 H 0.10 1.22 6.69 -51.93 -0.35 0.87 16 4 C 0.52 9.08 6.54 -10.98 -0.07 9.01 16 5 O -0.55 -11.18 15.51 5.56 0.09 -11.09 16 6 N -0.60 -10.70 2.94 -172.22 -0.51 -11.21 16 7 C 0.08 1.43 6.12 -3.37 -0.02 1.41 16 8 C 0.13 2.72 4.59 -3.37 -0.02 2.71 16 9 N -0.60 -13.88 2.68 -171.77 -0.46 -14.34 16 10 C -0.28 -7.45 9.82 -15.06 -0.15 -7.60 16 11 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 12 C 0.04 1.16 4.78 -17.43 -0.08 1.08 16 13 N -0.88 -25.74 13.97 55.49 0.78 -24.96 16 14 Si 0.83 20.52 26.58 -169.99 -4.52 16.01 16 15 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 16 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 17 H -0.26 -6.05 5.10 56.52 0.29 -5.77 16 18 C 0.13 2.66 6.67 -3.60 -0.02 2.64 16 19 C 0.10 1.77 6.60 -3.60 -0.02 1.75 16 20 C 0.10 1.21 2.34 -25.55 -0.06 1.15 16 21 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 22 C -0.15 -1.31 5.69 -24.60 -0.14 -1.45 16 23 C -0.16 -1.23 7.00 -25.20 -0.18 -1.41 16 24 C 0.05 0.48 7.70 37.73 0.29 0.77 16 25 O -0.37 -5.31 10.88 -35.23 -0.38 -5.70 16 26 H 0.07 0.85 7.16 -51.93 -0.37 0.48 16 27 H 0.07 0.57 7.42 -51.93 -0.39 0.19 16 28 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.08 1.03 4.85 -51.93 -0.25 0.78 16 31 H 0.03 0.64 6.79 -51.92 -0.35 0.29 16 32 H 0.08 1.69 5.82 -51.93 -0.30 1.39 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 1.44 7.93 -51.93 -0.41 1.02 16 36 H 0.08 1.53 6.99 -51.93 -0.36 1.16 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 39 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -32.51 329.35 -7.43 -39.94 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.09 Total: -0.89 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -0.30 Total: 7.27 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.19 Total: -50.51 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.30 Total: -16.79 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.52 Total: 16.01 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.51 -7.43 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720618532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.656 kcal (2) G-P(sol) polarization free energy of solvation -32.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds