Wall clock time and date at job start Tue Mar 31 2020 05:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46903 * 2 1 4 4 C 1.46904 * 110.99533 * 164.20599 * 3 2 1 5 5 C 1.50702 * 109.47290 * 293.95271 * 4 3 2 6 6 H 1.07998 * 119.99931 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99982 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99898 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 119.99918 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46946 * 269.99489 * 9 7 5 11 11 H 1.48499 * 109.47230 * 29.99613 * 9 7 5 12 12 H 1.48493 * 109.47196 * 150.00091 * 9 7 5 13 13 C 1.46889 * 111.00432 * 288.16094 * 3 2 1 14 14 N 1.46502 * 109.47339 * 151.32787 * 13 3 2 15 15 C 1.47114 * 124.34599 * 279.97627 * 14 13 3 16 16 C 1.53223 * 105.06899 * 164.15844 * 15 14 13 17 17 C 1.53401 * 111.67917 * 144.45241 * 16 15 14 18 18 C 1.55318 * 101.70945 * 102.47575 * 17 16 15 19 19 O 1.44518 * 103.68527 * 35.86015 * 18 17 16 20 20 C 1.44159 * 107.05206 * 320.83079 * 19 18 17 21 21 C 1.53194 * 103.26560 * 24.21390 * 16 15 14 22 22 C 1.34592 * 124.34698 * 100.27438 * 14 13 3 23 23 O 1.21281 * 124.94310 * 0.33007 * 22 14 13 24 24 H 1.08997 * 109.47092 * 178.69100 * 1 2 3 25 25 H 1.09004 * 109.47287 * 298.68487 * 1 2 3 26 26 H 1.08994 * 109.47376 * 58.68524 * 1 2 3 27 27 H 1.08998 * 109.46867 * 240.00159 * 2 1 3 28 28 H 1.08994 * 109.47328 * 120.00290 * 2 1 3 29 29 H 1.08999 * 109.46863 * 173.96179 * 4 3 2 30 30 H 1.08994 * 109.47217 * 53.95599 * 4 3 2 31 31 H 0.96998 * 119.99588 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47073 * 271.33022 * 13 3 2 33 33 H 1.08999 * 109.47300 * 31.32963 * 13 3 2 34 34 H 1.08991 * 110.30636 * 283.20601 * 15 14 13 35 35 H 1.09000 * 110.30437 * 45.37134 * 15 14 13 36 36 H 1.08999 * 110.97989 * 220.57964 * 17 16 15 37 37 H 1.09002 * 110.97999 * 344.37514 * 17 16 15 38 38 H 1.08996 * 110.58036 * 277.31423 * 18 17 16 39 39 H 1.08996 * 110.70969 * 154.47544 * 18 17 16 40 40 H 1.09007 * 110.00681 * 266.81240 * 20 19 18 41 41 H 1.09001 * 110.04738 * 145.47013 * 20 19 18 42 42 H 1.09003 * 110.54645 * 217.87569 * 21 16 15 43 43 H 1.08995 * 110.54378 * 95.07699 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4393 1.4414 0.3733 5 6 3.5997 1.0045 1.8066 6 1 2.7336 0.7135 2.3826 7 6 4.8521 0.9751 2.3824 8 7 4.9921 0.5933 3.6332 9 14 6.3501 1.4776 1.3861 10 1 6.9104 0.2860 0.6995 11 1 5.9551 2.4912 0.3753 12 1 7.3758 2.0550 2.2914 13 6 1.7922 2.0239 -1.3030 14 7 1.6275 3.4677 -1.1169 15 6 0.3812 4.1105 -0.6724 16 6 0.7925 5.5225 -0.2426 17 6 -0.2906 6.5554 -0.5790 18 6 -0.9509 6.7831 0.8082 19 8 0.1563 6.6934 1.7327 20 6 1.0133 5.6330 1.2643 21 6 2.0796 5.7704 -1.0355 22 6 2.5955 4.3768 -1.3362 23 8 3.7172 4.1188 -1.7184 24 1 -0.3633 -1.0274 -0.0235 25 1 -0.3634 0.4933 0.9016 26 1 -0.3634 0.5341 -0.8779 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8040 2.4626 0.2619 30 1 4.0121 0.7783 -0.2749 31 1 5.8732 0.5730 4.0383 32 1 2.6463 1.8364 -1.9536 33 1 0.8916 1.6112 -1.7577 34 1 -0.3347 4.1555 -1.4930 35 1 -0.0438 3.5681 0.1721 36 1 0.1527 7.4770 -0.9562 37 1 -1.0091 6.1496 -1.2913 38 1 -1.6864 6.0057 1.0147 39 1 -1.4128 7.7691 0.8581 40 1 0.7454 4.6948 1.7502 41 1 2.0555 5.8757 1.4717 42 1 2.8000 6.3232 -0.4325 43 1 1.8624 6.3057 -1.9598 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756846076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:59 Heat of formation + Delta-G solvation = -62.947037 kcal Electronic energy + Delta-G solvation = -23802.364039 eV Core-core repulsion = 20461.967241 eV Total energy + Delta-G solvation = -3340.396798 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00370 -38.75859 -36.97606 -35.79036 -32.89772 -32.41451 -30.38816 -29.95614 -28.02994 -27.58532 -25.67030 -24.08504 -22.83114 -22.16060 -20.18417 -20.00125 -19.31286 -16.99127 -16.54317 -16.33031 -16.01025 -15.59313 -15.09141 -14.91772 -14.68275 -14.24441 -14.02763 -13.59878 -13.47786 -13.35697 -12.82680 -12.61364 -12.44734 -12.28449 -12.10356 -11.90872 -11.83636 -11.47171 -11.32019 -11.20092 -10.94706 -10.82368 -10.71433 -10.48460 -10.13384 -9.77016 -9.67740 -9.51031 -9.26743 -8.60958 -8.49572 -7.52348 -6.03329 -4.00703 2.81345 3.26605 3.34120 3.42015 3.54389 3.82026 4.11512 4.20774 4.48121 4.48757 4.73911 4.75579 4.87885 5.02124 5.26681 5.30627 5.35008 5.38518 5.45164 5.54736 5.58553 5.59876 5.64738 5.71654 5.74271 5.79522 5.82130 5.89616 5.95315 6.00384 6.19993 6.51784 6.64008 6.68900 6.78199 6.92737 7.03984 7.35484 7.63217 7.85013 7.99449 8.46541 8.64424 9.03269 9.59490 11.09220 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.006041 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.850345 B = 4633.648313 C = 5013.414868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 N -0.541 5.541 4 C 0.165 3.835 5 C -0.509 4.509 6 H 0.080 0.920 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.866 3.134 10 H -0.278 1.278 11 H -0.260 1.260 12 H -0.286 1.286 13 C 0.283 3.717 14 N -0.602 5.602 15 C 0.123 3.877 16 C -0.108 4.108 17 C -0.138 4.138 18 C 0.046 3.954 19 O -0.378 6.378 20 C 0.062 3.938 21 C -0.139 4.139 22 C 0.517 3.483 23 O -0.529 6.529 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.021 0.979 28 H 0.095 0.905 29 H 0.033 0.967 30 H -0.017 1.017 31 H 0.263 0.737 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.321 9.691 -10.734 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 N -0.267 5.267 4 C 0.039 3.961 5 C -0.547 4.547 6 H 0.098 0.902 7 C -0.130 4.130 8 N -0.539 5.539 9 Si 0.693 3.307 10 H -0.204 1.204 11 H -0.184 1.184 12 H -0.212 1.212 13 C 0.071 3.929 14 N -0.337 5.337 15 C 0.000 4.000 16 C -0.109 4.109 17 C -0.176 4.176 18 C -0.031 4.031 19 O -0.297 6.297 20 C -0.014 4.014 21 C -0.179 4.179 22 C 0.303 3.697 23 O -0.405 6.405 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.001 0.999 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.796 9.809 -10.272 19.801 hybrid contribution 1.335 -0.398 -1.120 1.788 sum -12.461 9.411 -11.392 19.329 Atomic orbital electron populations 1.21823 0.96304 1.00573 1.01477 1.21960 0.94212 0.89064 1.01700 1.61715 1.22062 1.16740 1.26219 1.20208 0.82459 0.96703 0.96746 1.20996 0.94653 1.44294 0.94790 0.90177 1.24851 0.98651 0.94771 0.94754 1.69893 1.23545 1.48130 1.12331 0.86979 0.83234 0.79761 0.80757 1.20374 1.18390 1.21153 1.21776 1.00576 0.78671 0.91847 1.48441 1.12297 1.06561 1.66421 1.22023 0.86884 0.91078 1.00048 1.21934 0.96033 0.95917 0.96977 1.23040 0.97115 0.98913 0.98509 1.23601 0.90051 1.02025 0.87423 1.88977 1.35919 1.55046 1.49798 1.23180 0.95909 0.91763 0.90573 1.22320 0.97212 0.96335 1.02041 1.20928 0.84384 0.87678 0.76676 1.90742 1.19178 1.83802 1.46799 0.92987 0.92082 0.93877 0.96090 0.88663 0.94857 0.99920 0.92707 0.92347 0.90248 0.91176 0.89389 0.89796 0.89598 0.92004 0.89121 0.90528 0.89141 0.87764 0.87832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.99 37.16 0.37 -1.63 16 2 C 0.06 1.06 5.48 -3.82 -0.02 1.04 16 3 N -0.54 -10.92 4.55 -239.99 -1.09 -12.01 16 4 C 0.16 4.14 3.62 -4.97 -0.02 4.12 16 5 C -0.51 -14.58 8.84 -34.44 -0.30 -14.89 16 6 H 0.08 2.46 7.50 -52.49 -0.39 2.06 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 9 Si 0.87 22.76 27.47 -169.99 -4.67 18.10 16 10 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.26 -6.97 6.54 56.52 0.37 -6.60 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 C 0.28 4.81 5.66 -63.33 -0.36 4.45 16 14 N -0.60 -9.47 3.19 -176.23 -0.56 -10.04 16 15 C 0.12 1.43 6.53 -3.59 -0.02 1.40 16 16 C -0.11 -1.18 0.85 -154.24 -0.13 -1.31 16 17 C -0.14 -1.08 6.23 -25.29 -0.16 -1.23 16 18 C 0.05 0.41 7.74 38.39 0.30 0.70 16 19 O -0.38 -4.95 11.55 -35.23 -0.41 -5.35 16 20 C 0.06 0.83 7.11 37.00 0.26 1.09 16 21 C -0.14 -1.72 5.91 -27.33 -0.16 -1.88 16 22 C 0.52 8.96 7.57 -10.62 -0.08 8.88 16 23 O -0.53 -11.69 16.97 5.56 0.09 -11.59 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.04 0.52 6.55 -51.93 -0.34 0.18 16 27 H 0.02 0.36 8.05 -51.93 -0.42 -0.06 16 28 H 0.10 1.99 6.59 -51.93 -0.34 1.65 16 29 H 0.03 0.91 6.13 -51.93 -0.32 0.59 16 30 H -0.02 -0.44 7.55 -51.93 -0.39 -0.83 16 31 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 32 H 0.06 1.10 7.44 -51.93 -0.39 0.72 16 33 H 0.08 1.10 6.18 -51.93 -0.32 0.78 16 34 H 0.07 0.62 7.50 -51.93 -0.39 0.23 16 35 H 0.09 1.09 7.46 -51.93 -0.39 0.70 16 36 H 0.08 0.60 7.88 -51.93 -0.41 0.19 16 37 H 0.09 0.51 7.46 -51.93 -0.39 0.12 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.13 7.37 -51.93 -0.38 0.74 16 41 H 0.09 1.30 7.36 -51.93 -0.38 0.92 16 42 H 0.10 1.31 7.47 -51.93 -0.39 0.92 16 43 H 0.10 1.02 7.86 -51.93 -0.41 0.61 16 LS Contribution 336.65 15.07 5.07 5.07 Total: -1.00 -34.62 336.65 -8.11 -42.74 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.90 Total: -2.49 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -0.42 Total: 2.76 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.88 Total: -49.23 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.31 Total: -16.94 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.67 Total: 18.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.62 -8.11 -42.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756846076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.211 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds