Wall clock time and date at job start Tue Mar 31 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.46903 * 2 1 4 4 C 1.46904 * 110.99533 * 164.20599 * 3 2 1 5 5 C 1.50702 * 109.47290 * 293.95271 * 4 3 2 6 6 H 1.07998 * 119.99931 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99982 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99898 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 119.99918 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.46946 * 269.99489 * 9 7 5 11 11 H 1.48499 * 109.47230 * 29.99613 * 9 7 5 12 12 H 1.48493 * 109.47196 * 150.00091 * 9 7 5 13 13 C 1.46889 * 111.00432 * 288.16094 * 3 2 1 14 14 N 1.46502 * 109.47339 * 151.32787 * 13 3 2 15 15 C 1.47114 * 124.34599 * 279.97627 * 14 13 3 16 16 C 1.53223 * 105.06899 * 164.15844 * 15 14 13 17 17 C 1.53401 * 111.67917 * 144.45241 * 16 15 14 18 18 C 1.55318 * 101.70945 * 102.47575 * 17 16 15 19 19 O 1.44518 * 103.68527 * 35.86015 * 18 17 16 20 20 C 1.44159 * 107.05206 * 320.83079 * 19 18 17 21 21 C 1.53194 * 103.26560 * 24.21390 * 16 15 14 22 22 C 1.34592 * 124.34698 * 100.27438 * 14 13 3 23 23 O 1.21281 * 124.94310 * 0.33007 * 22 14 13 24 24 H 1.08997 * 109.47092 * 178.69100 * 1 2 3 25 25 H 1.09004 * 109.47287 * 298.68487 * 1 2 3 26 26 H 1.08994 * 109.47376 * 58.68524 * 1 2 3 27 27 H 1.08998 * 109.46867 * 240.00159 * 2 1 3 28 28 H 1.08994 * 109.47328 * 120.00290 * 2 1 3 29 29 H 1.08999 * 109.46863 * 173.96179 * 4 3 2 30 30 H 1.08994 * 109.47217 * 53.95599 * 4 3 2 31 31 H 0.96998 * 119.99588 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47073 * 271.33022 * 13 3 2 33 33 H 1.08999 * 109.47300 * 31.32963 * 13 3 2 34 34 H 1.08991 * 110.30636 * 283.20601 * 15 14 13 35 35 H 1.09000 * 110.30437 * 45.37134 * 15 14 13 36 36 H 1.08999 * 110.97989 * 220.57964 * 17 16 15 37 37 H 1.09002 * 110.97999 * 344.37514 * 17 16 15 38 38 H 1.08996 * 110.58036 * 277.31423 * 18 17 16 39 39 H 1.08996 * 110.70969 * 154.47544 * 18 17 16 40 40 H 1.09007 * 110.00681 * 266.81240 * 20 19 18 41 41 H 1.09001 * 110.04738 * 145.47013 * 20 19 18 42 42 H 1.09003 * 110.54645 * 217.87569 * 21 16 15 43 43 H 1.08995 * 110.54378 * 95.07699 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4393 1.4414 0.3733 5 6 3.5997 1.0045 1.8066 6 1 2.7336 0.7135 2.3826 7 6 4.8521 0.9751 2.3824 8 7 4.9921 0.5933 3.6332 9 14 6.3501 1.4776 1.3861 10 1 6.9104 0.2860 0.6995 11 1 5.9551 2.4912 0.3753 12 1 7.3758 2.0550 2.2914 13 6 1.7922 2.0239 -1.3030 14 7 1.6275 3.4677 -1.1169 15 6 0.3812 4.1105 -0.6724 16 6 0.7925 5.5225 -0.2426 17 6 -0.2906 6.5554 -0.5790 18 6 -0.9509 6.7831 0.8082 19 8 0.1563 6.6934 1.7327 20 6 1.0133 5.6330 1.2643 21 6 2.0796 5.7704 -1.0355 22 6 2.5955 4.3768 -1.3362 23 8 3.7172 4.1188 -1.7184 24 1 -0.3633 -1.0274 -0.0235 25 1 -0.3634 0.4933 0.9016 26 1 -0.3634 0.5341 -0.8779 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.8040 2.4626 0.2619 30 1 4.0121 0.7783 -0.2749 31 1 5.8732 0.5730 4.0383 32 1 2.6463 1.8364 -1.9536 33 1 0.8916 1.6112 -1.7577 34 1 -0.3347 4.1555 -1.4930 35 1 -0.0438 3.5681 0.1721 36 1 0.1527 7.4770 -0.9562 37 1 -1.0091 6.1496 -1.2913 38 1 -1.6864 6.0057 1.0147 39 1 -1.4128 7.7691 0.8581 40 1 0.7454 4.6948 1.7502 41 1 2.0555 5.8757 1.4717 42 1 2.8000 6.3232 -0.4325 43 1 1.8624 6.3057 -1.9598 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756846076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:58 Heat of formation + Delta-G solvation = -89.307437 kcal Electronic energy + Delta-G solvation = -23803.507112 eV Core-core repulsion = 20461.967241 eV Total energy + Delta-G solvation = -3341.539871 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.07380 -39.89358 -38.55743 -37.03446 -34.84977 -33.80603 -31.83397 -30.98803 -29.40752 -28.92890 -26.94547 -25.41720 -23.96626 -23.58915 -21.78908 -20.97628 -20.59292 -19.08466 -17.82773 -17.42991 -17.15941 -16.77132 -16.62978 -16.10279 -15.90339 -15.79166 -15.57944 -15.02835 -14.69628 -14.52778 -14.43867 -14.22693 -13.85830 -13.37938 -13.36691 -13.10533 -12.98707 -12.78969 -12.74924 -12.58750 -12.24080 -12.14079 -12.02165 -11.86347 -11.68633 -11.59086 -11.45505 -10.87305 -10.83205 -10.59664 -9.85830 -9.17216 -8.37179 -6.37840 1.20731 1.25031 1.39883 1.49637 2.08117 2.24923 2.95868 2.98591 3.15683 3.26638 3.30191 3.46741 3.92130 3.99810 4.07596 4.22106 4.28821 4.35229 4.44568 4.52380 4.54837 4.62225 4.67570 4.68711 4.75272 4.80386 4.86154 4.89470 4.91959 4.97485 5.05026 5.10416 5.19486 5.24334 5.38820 5.44792 5.55361 5.85323 5.93057 6.16723 6.32940 6.52474 6.67678 7.15204 7.25778 8.78822 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015166 B = 0.006041 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.850345 B = 4633.648313 C = 5013.414868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 N -0.548 5.548 4 C 0.183 3.817 5 C -0.507 4.507 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.938 5.938 9 Si 0.928 3.072 10 H -0.264 1.264 11 H -0.272 1.272 12 H -0.275 1.275 13 C 0.283 3.717 14 N -0.605 5.605 15 C 0.121 3.879 16 C -0.099 4.099 17 C -0.123 4.123 18 C 0.036 3.964 19 O -0.403 6.403 20 C 0.062 3.938 21 C -0.128 4.128 22 C 0.499 3.501 23 O -0.589 6.589 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.010 0.990 30 H -0.027 1.027 31 H 0.267 0.733 32 H 0.036 0.964 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.820 10.894 -13.112 23.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.072 4.072 3 N -0.274 5.274 4 C 0.055 3.945 5 C -0.545 4.545 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.579 5.579 9 Si 0.753 3.247 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.200 1.200 13 C 0.071 3.929 14 N -0.338 5.338 15 C 0.000 4.000 16 C -0.100 4.100 17 C -0.160 4.160 18 C -0.040 4.040 19 O -0.322 6.322 20 C -0.015 4.015 21 C -0.167 4.167 22 C 0.288 3.712 23 O -0.470 6.470 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.028 0.972 30 H -0.009 1.009 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.358 11.014 -12.644 23.426 hybrid contribution 2.000 -0.790 -0.320 2.174 sum -14.359 10.225 -12.964 21.881 Atomic orbital electron populations 1.21710 0.92448 1.02368 1.02227 1.22004 0.97277 0.87521 1.00359 1.61679 1.18559 1.18511 1.28667 1.19790 0.85764 0.94593 0.94331 1.21189 0.93624 1.43396 0.96326 0.93270 1.25587 1.01497 0.95017 0.95672 1.70001 1.24487 1.49628 1.13801 0.85998 0.80144 0.79411 0.79131 1.18942 1.19745 1.20017 1.21858 1.01632 0.79593 0.89776 1.48624 1.13627 1.06021 1.65558 1.22348 0.85653 0.90632 1.01396 1.21881 0.96521 0.96850 0.94713 1.23053 0.96195 0.98357 0.98406 1.23927 0.89107 1.03673 0.87298 1.88958 1.37212 1.54564 1.51507 1.23029 0.94940 0.90930 0.92623 1.22338 0.97411 0.93298 1.03702 1.21853 0.83769 0.89909 0.75632 1.90696 1.21662 1.85057 1.49547 0.90821 0.93115 0.91103 0.94861 0.92592 0.97165 1.00924 0.92335 0.94619 0.85887 0.86583 0.90141 0.88405 0.86265 0.91112 0.87047 0.92868 0.91429 0.88475 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.99 71.98 0.72 -2.57 16 2 C 0.06 2.00 5.48 86.30 0.47 2.48 16 3 N -0.55 -22.25 4.55 -913.19 -4.16 -26.40 16 4 C 0.18 9.48 3.62 85.56 0.31 9.79 16 5 C -0.51 -30.32 8.84 25.60 0.23 -30.10 16 6 H 0.05 3.18 7.50 -2.91 -0.02 3.16 16 7 C 0.02 1.26 5.47 84.66 0.46 1.72 16 8 N -0.94 -60.04 13.96 21.45 0.30 -59.74 16 9 Si 0.93 48.58 27.47 68.60 1.88 50.47 16 10 H -0.26 -13.19 7.11 99.48 0.71 -12.48 16 11 H -0.27 -14.78 6.54 99.48 0.65 -14.13 16 12 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 13 C 0.28 9.26 5.66 170.81 0.97 10.23 16 14 N -0.61 -18.16 3.19 -829.95 -2.65 -20.81 16 15 C 0.12 2.42 6.53 86.34 0.56 2.99 16 16 C -0.10 -1.92 0.85 -52.01 -0.04 -1.96 16 17 C -0.12 -1.33 6.23 31.53 0.20 -1.14 16 18 C 0.04 0.51 7.74 72.78 0.56 1.08 16 19 O -0.40 -10.13 11.55 -148.98 -1.72 -11.85 16 20 C 0.06 1.65 7.11 71.88 0.51 2.16 16 21 C -0.13 -2.92 5.91 30.20 0.18 -2.75 16 22 C 0.50 17.16 7.57 87.98 0.67 17.82 16 23 O -0.59 -26.74 16.97 -3.03 -0.05 -26.79 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.07 1.41 6.55 -2.39 -0.02 1.39 16 27 H 0.03 1.09 8.05 -2.39 -0.02 1.08 16 28 H 0.06 2.42 6.59 -2.39 -0.02 2.41 16 29 H 0.01 0.58 6.13 -2.39 -0.01 0.57 16 30 H -0.03 -1.43 7.55 -2.39 -0.02 -1.45 16 31 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 32 H 0.04 1.35 7.44 -2.39 -0.02 1.33 16 33 H 0.12 2.94 6.18 -2.39 -0.01 2.92 16 34 H 0.12 1.36 7.50 -2.39 -0.02 1.34 16 35 H 0.08 1.79 7.46 -2.39 -0.02 1.77 16 36 H 0.10 0.88 7.88 -2.39 -0.02 0.86 16 37 H 0.12 0.59 7.46 -2.39 -0.02 0.57 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 1.63 7.37 -2.38 -0.02 1.61 16 41 H 0.07 2.06 7.36 -2.39 -0.02 2.04 16 42 H 0.10 2.40 7.47 -2.39 -0.02 2.38 16 43 H 0.14 2.19 7.86 -2.39 -0.02 2.18 16 Total: -1.00 -81.09 336.65 0.34 -80.75 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.93 Total: 4.62 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.79 Total: 9.75 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -6.50 Total: -106.96 kcal Atomic # 8 Polarization: -36.87 SS G_CDS: -1.77 Total: -38.64 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 1.88 Total: 50.47 kcal Total: -81.09 0.34 -80.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756846076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.554 kcal (2) G-P(sol) polarization free energy of solvation -81.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds