Wall clock time and date at job start Tue Mar 31 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47085 * 2 1 4 4 C 1.50697 * 109.47150 * 120.00148 * 2 1 3 5 5 H 1.08003 * 120.00276 * 119.99679 * 4 2 1 6 6 C 1.37877 * 119.99905 * 300.00086 * 4 2 1 7 7 N 1.31508 * 120.00045 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99985 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47133 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47240 * 119.99459 * 8 6 4 11 11 H 1.48498 * 109.46932 * 239.99738 * 8 6 4 12 12 N 1.46903 * 109.46836 * 240.00175 * 2 1 3 13 13 C 1.46897 * 111.00340 * 69.86151 * 12 2 1 14 14 C 1.46902 * 110.99850 * 305.90283 * 12 2 1 15 15 N 1.46501 * 109.47217 * 209.33186 * 14 12 2 16 16 C 1.47111 * 124.34707 * 90.00091 * 15 14 12 17 17 C 1.53056 * 105.15492 * 164.31696 * 16 15 14 18 18 C 1.53399 * 111.82841 * 144.21919 * 17 16 15 19 19 C 1.55311 * 101.71408 * 102.29663 * 18 17 16 20 20 O 1.44518 * 103.68296 * 35.85408 * 19 18 17 21 21 C 1.44156 * 107.05236 * 320.82651 * 20 19 18 22 22 C 1.53191 * 103.34273 * 23.85625 * 17 16 15 23 23 C 1.34600 * 124.34891 * 270.03341 * 15 14 12 24 24 O 1.21283 * 124.94027 * 0.30813 * 23 15 14 25 25 H 1.09001 * 109.46757 * 305.97658 * 1 2 3 26 26 H 1.09000 * 109.46630 * 65.97509 * 1 2 3 27 27 H 1.09000 * 109.46840 * 185.97676 * 1 2 3 28 28 H 0.96998 * 120.00090 * 180.02562 * 7 6 4 29 29 H 1.09002 * 109.46836 * 296.04454 * 13 12 2 30 30 H 1.09001 * 109.47056 * 56.04098 * 13 12 2 31 31 H 1.09002 * 109.47471 * 176.04608 * 13 12 2 32 32 H 1.08998 * 109.46768 * 89.33503 * 14 12 2 33 33 H 1.08994 * 109.47455 * 329.33580 * 14 12 2 34 34 H 1.09002 * 110.30562 * 45.39665 * 16 15 14 35 35 H 1.09002 * 110.30806 * 283.23578 * 16 15 14 36 36 H 1.09004 * 110.97968 * 220.40216 * 18 17 16 37 37 H 1.09001 * 110.98103 * 344.18696 * 18 17 16 38 38 H 1.09008 * 110.58058 * 277.31090 * 19 18 17 39 39 H 1.09001 * 110.71360 * 154.46999 * 19 18 17 40 40 H 1.08994 * 110.01301 * 266.81659 * 21 20 19 41 41 H 1.09004 * 110.00422 * 145.45446 * 21 20 19 42 42 H 1.09008 * 110.54498 * 95.29173 * 22 17 16 43 43 H 1.09001 * 110.54474 * 218.09327 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.1475 -2.2864 3.6037 10 1 3.1474 -0.1859 4.8160 11 1 1.1678 -1.5866 4.8165 12 7 2.0197 -0.6925 -1.1995 13 6 1.7500 0.0957 -2.4094 14 6 1.4369 -2.0367 -1.3060 15 7 2.3731 -2.9210 -2.0045 16 6 3.4091 -3.7253 -1.3384 17 6 3.8490 -4.7548 -2.3821 18 6 5.3503 -5.0559 -2.2888 19 6 5.3525 -6.4232 -1.5521 20 8 4.1826 -7.0936 -2.0721 21 6 3.1473 -6.0987 -2.2003 22 6 3.4852 -4.0875 -3.7121 23 6 2.3962 -3.1013 -3.3382 24 8 1.6537 -2.5545 -4.1260 25 1 -0.3633 0.6037 0.8317 26 1 -0.3632 0.4184 -0.9387 27 1 -0.3633 -1.0221 0.1070 28 1 0.7096 1.1617 3.4843 29 1 0.6731 0.1917 -2.5480 30 1 2.1924 1.0863 -2.3039 31 1 2.1843 -0.4060 -3.2742 32 1 0.5019 -1.9841 -1.8638 33 1 1.2428 -2.4288 -0.3078 34 1 2.9947 -4.2267 -0.4638 35 1 4.2507 -3.0951 -1.0507 36 1 5.7926 -5.1465 -3.2809 37 1 5.8651 -4.2954 -1.7017 38 1 5.2642 -6.2784 -0.4753 39 1 6.2545 -6.9874 -1.7890 40 1 2.5340 -6.0803 -1.2994 41 1 2.5269 -6.3161 -3.0698 42 1 4.3478 -3.5658 -4.1270 43 1 3.1067 -4.8255 -4.4194 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756858316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:42 Heat of formation + Delta-G solvation = -63.460321 kcal Electronic energy + Delta-G solvation = -23679.306053 eV Core-core repulsion = 20338.886997 eV Total energy + Delta-G solvation = -3340.419056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02310 -38.80664 -37.01281 -35.83158 -33.16005 -32.24400 -30.14564 -28.79495 -28.04097 -26.68937 -25.47544 -24.80388 -23.27051 -22.77154 -20.11875 -19.89091 -18.90987 -16.65814 -16.51346 -16.38139 -15.93697 -15.38120 -15.11821 -14.95878 -14.83444 -13.99378 -13.84076 -13.56898 -13.42720 -13.17701 -12.77796 -12.50658 -12.22006 -12.10499 -11.91293 -11.82376 -11.49624 -11.40681 -11.12581 -11.01632 -10.93714 -10.74560 -10.67165 -10.53027 -10.22137 -9.98758 -9.82550 -9.47221 -9.03916 -8.55480 -8.35409 -7.30559 -6.09996 -4.14645 2.84432 3.22930 3.31522 3.33120 3.35661 3.71919 4.10126 4.19191 4.33188 4.48386 4.71294 4.86601 4.98488 5.10833 5.22510 5.26502 5.40635 5.44618 5.52227 5.56402 5.65522 5.67598 5.73609 5.81791 5.86012 5.94154 6.04942 6.24295 6.26167 6.54721 6.63088 6.69424 6.77057 6.81461 7.05961 7.29349 7.53112 7.60295 7.75680 8.02361 8.25643 8.47439 8.50834 8.91234 9.51071 10.97365 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.005731 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.018316 B = 4884.233072 C = 6209.587677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.214 3.786 3 H 0.042 0.958 4 C -0.504 4.504 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.549 5.549 13 C 0.030 3.970 14 C 0.294 3.706 15 N -0.599 5.599 16 C 0.122 3.878 17 C -0.111 4.111 18 C -0.138 4.138 19 C 0.045 3.955 20 O -0.380 6.380 21 C 0.063 3.937 22 C -0.138 4.138 23 C 0.513 3.487 24 O -0.540 6.540 25 H 0.086 0.914 26 H 0.010 0.990 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 -11.720 -7.994 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.108 3.892 3 H 0.060 0.940 4 C -0.543 4.543 5 H 0.080 0.920 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.275 5.275 13 C -0.119 4.119 14 C 0.084 3.916 15 N -0.333 5.333 16 C -0.002 4.002 17 C -0.112 4.112 18 C -0.176 4.176 19 C -0.031 4.031 20 O -0.299 6.299 21 C -0.014 4.014 22 C -0.178 4.178 23 C 0.300 3.700 24 O -0.418 6.418 25 H 0.105 0.895 26 H 0.029 0.971 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.028 -11.521 -8.203 15.792 hybrid contribution -0.511 0.104 0.966 1.098 sum 6.517 -11.416 -7.237 15.006 Atomic orbital electron populations 1.22436 1.00514 1.00242 0.99786 1.19327 0.89844 0.94630 0.85425 0.93970 1.21092 1.30939 1.12654 0.89615 0.92039 1.24932 0.95092 0.95069 0.99013 1.69902 1.36744 1.22854 1.23448 0.86488 0.78566 0.79630 0.82976 1.19767 1.21021 1.21127 1.61972 1.59722 1.02104 1.03660 1.22323 0.98434 0.97899 0.93243 1.21831 0.87010 0.85916 0.96877 1.48702 1.34548 1.43236 1.06786 1.22029 0.92034 0.91530 0.94569 1.21936 0.96733 0.96167 0.96348 1.23045 0.93959 0.98271 1.02337 1.23647 0.89175 0.92375 0.97927 1.88948 1.22427 1.32739 1.85793 1.23153 0.90540 0.85380 1.02325 1.22309 0.99533 0.98963 0.97035 1.20895 0.84243 0.82268 0.82603 1.90691 1.44623 1.52574 1.53869 0.89514 0.97057 0.95186 0.92937 0.96272 0.92587 0.92562 0.93147 0.87865 0.90110 0.90042 0.89785 0.89121 0.91768 0.88953 0.91385 0.89437 0.87686 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.27 37.16 0.31 -3.71 16 2 C 0.21 5.20 2.29 -68.86 -0.16 5.04 16 3 H 0.04 1.14 8.02 -51.93 -0.42 0.72 16 4 C -0.50 -12.97 7.59 -34.44 -0.26 -13.23 16 5 H 0.06 1.56 7.45 -52.48 -0.39 1.17 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.89 -24.48 11.39 55.43 0.63 -23.85 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 N -0.55 -11.73 4.80 -240.20 -1.15 -12.88 16 13 C 0.03 0.60 9.15 60.06 0.55 1.14 16 14 C 0.29 5.71 4.24 -63.31 -0.27 5.44 16 15 N -0.60 -9.80 3.19 -176.32 -0.56 -10.36 16 16 C 0.12 1.59 6.53 -3.68 -0.02 1.57 16 17 C -0.11 -1.16 0.85 -154.33 -0.13 -1.29 16 18 C -0.14 -1.16 6.23 -25.30 -0.16 -1.32 16 19 C 0.05 0.39 7.74 38.38 0.30 0.69 16 20 O -0.38 -4.31 11.55 -35.23 -0.41 -4.72 16 21 C 0.06 0.66 7.10 37.00 0.26 0.92 16 22 C -0.14 -1.58 5.91 -27.34 -0.16 -1.74 16 23 C 0.51 8.34 7.57 -10.62 -0.08 8.26 16 24 O -0.54 -10.72 16.33 5.56 0.09 -10.63 16 25 H 0.09 2.24 6.25 -51.93 -0.32 1.92 16 26 H 0.01 0.23 6.53 -51.93 -0.34 -0.11 16 27 H 0.03 0.68 7.04 -51.93 -0.37 0.31 16 28 H 0.26 6.85 8.31 -40.82 -0.34 6.52 16 29 H 0.02 0.38 6.58 -51.93 -0.34 0.04 16 30 H 0.06 1.08 8.06 -51.93 -0.42 0.66 16 31 H 0.06 1.12 6.30 -51.93 -0.33 0.79 16 32 H 0.05 1.03 7.53 -51.93 -0.39 0.63 16 33 H 0.10 2.09 6.23 -51.93 -0.32 1.77 16 34 H 0.08 1.03 7.44 -51.93 -0.39 0.64 16 35 H 0.08 1.10 7.50 -51.93 -0.39 0.71 16 36 H 0.08 0.63 7.88 -51.93 -0.41 0.22 16 37 H 0.09 0.71 7.46 -51.93 -0.39 0.32 16 38 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.73 7.35 -51.93 -0.38 0.34 16 41 H 0.09 0.88 7.36 -51.93 -0.38 0.50 16 42 H 0.10 1.08 7.86 -51.92 -0.41 0.67 16 43 H 0.10 1.03 7.47 -51.93 -0.39 0.64 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -29.76 331.78 -8.09 -37.85 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.75 Total: 1.01 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.08 Total: 3.28 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -1.08 Total: -47.09 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.32 Total: -15.35 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.76 -8.09 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756858316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.608 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds