Wall clock time and date at job start Tue Mar 31 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46994 * 2 1 4 4 C 1.50699 * 109.47024 * 240.00275 * 2 1 3 5 5 H 1.08000 * 119.99336 * 239.99566 * 4 2 1 6 6 C 1.37873 * 120.00403 * 59.99929 * 4 2 1 7 7 N 1.31514 * 120.00159 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00265 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46956 * 59.99750 * 8 6 4 10 10 H 1.48496 * 109.47482 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47294 * 300.00683 * 8 6 4 12 12 N 1.46892 * 109.46890 * 119.99845 * 2 1 3 13 13 C 1.46901 * 111.00158 * 58.95580 * 12 2 1 14 14 C 1.46900 * 111.00108 * 295.00168 * 12 2 1 15 15 N 1.46504 * 109.46952 * 205.00156 * 14 12 2 16 16 C 1.47118 * 124.34863 * 90.00379 * 15 14 12 17 17 C 1.53036 * 105.23550 * 195.69490 * 16 15 14 18 18 C 1.53074 * 112.04879 * 215.33702 * 17 16 15 19 19 C 1.54835 * 103.52091 * 237.36441 * 18 17 16 20 20 O 1.44548 * 104.87602 * 23.71137 * 19 18 17 21 21 C 1.44783 * 105.53518 * 320.44210 * 20 19 18 22 22 C 1.53173 * 103.36463 * 336.10339 * 17 16 15 23 23 C 1.34821 * 124.48178 * 269.94646 * 15 14 12 24 24 O 1.21285 * 124.90843 * 359.68972 * 23 15 14 25 25 H 1.09006 * 109.46959 * 60.00335 * 1 2 3 26 26 H 1.09001 * 109.46994 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47422 * 300.00234 * 1 2 3 28 28 H 0.96992 * 120.00163 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47356 * 296.04894 * 13 12 2 30 30 H 1.09003 * 109.46793 * 56.04844 * 13 12 2 31 31 H 1.09004 * 109.47191 * 176.03831 * 13 12 2 32 32 H 1.08997 * 109.47212 * 85.00625 * 14 12 2 33 33 H 1.09003 * 109.47329 * 324.99774 * 14 12 2 34 34 H 1.09002 * 110.30917 * 76.72614 * 16 15 14 35 35 H 1.09000 * 110.30294 * 314.66073 * 16 15 14 36 36 H 1.09007 * 110.61303 * 355.87604 * 18 17 16 37 37 H 1.09007 * 110.61049 * 118.85091 * 18 17 16 38 38 H 1.09001 * 110.36384 * 142.56477 * 19 18 17 39 39 H 1.09007 * 110.36187 * 264.75465 * 19 18 17 40 40 H 1.09002 * 110.43409 * 280.35512 * 21 20 19 41 41 H 1.09000 * 110.43770 * 157.85318 * 21 20 19 42 42 H 1.08994 * 110.55203 * 141.89569 * 22 17 16 43 43 H 1.09001 * 110.54316 * 264.70711 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3225 -1.1194 -4.0080 9 1 1.8281 -2.5198 -4.0082 10 1 1.8280 -0.4192 -5.2205 11 1 3.8076 -1.1190 -4.0077 12 7 2.0196 -0.6924 1.1994 13 6 1.5283 -2.0761 1.2460 14 6 1.6486 0.0392 2.4180 15 7 2.5924 -0.2872 3.4900 16 6 3.8347 0.4545 3.7565 17 6 4.6611 -0.4585 4.6650 18 6 5.4676 0.3346 5.6963 19 6 6.9287 -0.1010 5.4260 20 8 6.9332 -0.5531 4.0531 21 6 5.6898 -1.2740 3.8781 22 6 3.6054 -1.3506 5.3252 23 6 2.4362 -1.3043 4.3610 24 8 1.4967 -2.0713 4.3712 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7088 1.1612 -3.4844 29 1 0.4420 -2.0731 1.3346 30 1 1.8168 -2.5950 0.3318 31 1 1.9618 -2.5868 2.1058 32 1 0.6415 -0.2469 2.7211 33 1 1.6784 1.1110 2.2216 34 1 3.6133 1.3933 4.2642 35 1 4.3684 0.6453 2.8255 36 1 5.3503 1.4060 5.5338 37 1 5.1675 0.0639 6.7087 38 1 7.6055 0.7445 5.5491 39 1 7.2123 -0.9133 6.0954 40 1 5.7724 -2.2803 4.2887 41 1 5.4179 -1.3135 2.8233 42 1 3.9763 -2.3704 5.4281 43 1 3.3169 -0.9476 6.2960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756858326.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:44 Heat of formation + Delta-G solvation = -61.038450 kcal Electronic energy + Delta-G solvation = -23551.822299 eV Core-core repulsion = 20211.508264 eV Total energy + Delta-G solvation = -3340.314035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.04423 -38.82053 -36.99537 -35.87267 -33.28207 -32.14905 -30.10876 -28.58632 -28.06398 -26.75426 -25.32248 -25.14831 -23.26622 -22.71476 -20.11764 -19.80167 -18.95657 -16.73603 -16.43802 -16.23141 -15.82319 -15.55623 -15.37298 -14.91939 -14.76803 -14.15384 -13.88190 -13.65313 -13.33993 -13.15661 -12.64291 -12.55206 -12.44951 -12.13164 -11.93021 -11.59714 -11.53995 -11.13742 -11.11869 -10.92089 -10.87678 -10.78163 -10.68858 -10.55452 -10.03554 -9.97683 -9.88723 -9.53888 -8.98383 -8.51589 -8.40621 -7.25756 -6.03208 -4.07057 2.75839 3.27119 3.32595 3.36603 3.40237 3.74415 4.10847 4.17090 4.40883 4.44445 4.67269 4.83589 4.89668 5.09076 5.23235 5.29309 5.39013 5.40546 5.41708 5.49263 5.55136 5.63608 5.68662 5.72030 5.84745 5.90589 5.94969 6.30763 6.47244 6.60760 6.64218 6.68724 6.84647 6.93863 7.06136 7.34858 7.44539 7.69727 7.79743 8.04838 8.30077 8.42064 8.55466 8.98063 9.58090 11.03785 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020657 B = 0.004666 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.177033 B = 5999.041706 C = 6692.211660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.216 3.784 3 H 0.040 0.960 4 C -0.500 4.500 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.548 5.548 13 C 0.041 3.959 14 C 0.288 3.712 15 N -0.603 5.603 16 C 0.121 3.879 17 C -0.107 4.107 18 C -0.139 4.139 19 C 0.044 3.956 20 O -0.372 6.372 21 C 0.060 3.940 22 C -0.140 4.140 23 C 0.515 3.485 24 O -0.534 6.534 25 H 0.090 0.910 26 H 0.032 0.968 27 H 0.005 0.995 28 H 0.261 0.739 29 H 0.018 0.982 30 H 0.071 0.929 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 0.421 17.128 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.110 3.890 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.274 5.274 13 C -0.107 4.107 14 C 0.077 3.923 15 N -0.338 5.338 16 C -0.002 4.002 17 C -0.108 4.108 18 C -0.177 4.177 19 C -0.033 4.033 20 O -0.291 6.291 21 C -0.017 4.017 22 C -0.181 4.181 23 C 0.301 3.699 24 O -0.411 6.411 25 H 0.108 0.892 26 H 0.051 0.949 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.380 0.194 16.711 18.696 hybrid contribution -0.764 -0.377 -0.707 1.107 sum 7.616 -0.182 16.005 17.726 Atomic orbital electron populations 1.22449 1.00614 0.99641 1.00545 1.19293 0.89816 0.94348 0.85536 0.94241 1.21042 1.30733 1.12536 0.89549 0.91977 1.24909 0.95162 0.95110 0.98983 1.69864 1.36918 1.23023 1.23579 0.86569 0.79220 0.79628 0.82034 1.20358 1.21379 1.20228 1.62065 1.60365 1.02711 1.02249 1.22208 0.97012 0.90331 1.01186 1.21776 0.89045 0.97844 0.83636 1.48712 1.23504 1.30856 1.30680 1.21996 0.84588 0.93814 0.99840 1.21892 0.95961 0.96610 0.96323 1.22872 0.94926 1.01066 0.98801 1.23482 0.96460 0.99186 0.84210 1.89236 1.39036 1.73034 1.27781 1.23408 0.82024 0.94228 1.01998 1.22322 0.94430 1.02028 0.99278 1.20955 0.87023 0.79980 0.81905 1.90713 1.34829 1.42402 1.73190 0.89178 0.94878 0.97560 0.92911 0.96350 0.90999 0.93667 0.92785 0.89814 0.91094 0.89149 0.89766 0.89836 0.89086 0.92319 0.91785 0.87666 0.88064 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.34 37.16 0.31 -3.85 16 2 C 0.22 5.32 2.27 -68.87 -0.16 5.16 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.63 16 4 C -0.50 -13.50 7.88 -34.44 -0.27 -13.77 16 5 H 0.06 1.70 6.77 -52.49 -0.36 1.34 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.46 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.55 -11.76 4.84 -240.20 -1.16 -12.92 16 13 C 0.04 0.88 8.57 60.07 0.51 1.39 16 14 C 0.29 5.29 4.80 -63.31 -0.30 4.99 16 15 N -0.60 -9.32 3.17 -176.25 -0.56 -9.88 16 16 C 0.12 1.46 6.38 -3.69 -0.02 1.43 16 17 C -0.11 -1.06 0.91 -154.34 -0.14 -1.21 16 18 C -0.14 -1.01 6.38 -25.73 -0.16 -1.17 16 19 C 0.04 0.35 7.67 38.12 0.29 0.64 16 20 O -0.37 -4.45 11.66 -35.23 -0.41 -4.86 16 21 C 0.06 0.68 6.76 37.18 0.25 0.93 16 22 C -0.14 -1.48 5.98 -27.34 -0.16 -1.64 16 23 C 0.51 8.05 7.32 -10.51 -0.08 7.97 16 24 O -0.53 -10.47 16.36 5.55 0.09 -10.38 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.79 6.47 -51.93 -0.34 0.45 16 27 H 0.01 0.12 7.13 -51.93 -0.37 -0.25 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.02 0.40 6.43 -51.93 -0.33 0.06 16 30 H 0.07 1.62 6.41 -51.93 -0.33 1.28 16 31 H 0.04 0.94 6.18 -51.93 -0.32 0.62 16 32 H 0.05 1.06 7.31 -51.93 -0.38 0.68 16 33 H 0.08 1.46 7.72 -51.93 -0.40 1.06 16 34 H 0.07 0.72 7.62 -51.93 -0.40 0.32 16 35 H 0.09 1.22 7.72 -51.93 -0.40 0.82 16 36 H 0.08 0.56 7.51 -51.92 -0.39 0.17 16 37 H 0.08 0.46 7.50 -51.92 -0.39 0.08 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.65 7.53 -51.93 -0.39 0.26 16 41 H 0.11 1.40 7.70 -51.93 -0.40 1.00 16 42 H 0.10 0.99 7.50 -51.93 -0.39 0.60 16 43 H 0.10 0.88 7.62 -51.93 -0.40 0.49 16 LS Contribution 330.48 15.07 4.98 4.98 Total: -1.00 -30.81 330.48 -8.17 -38.98 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.69 Total: -0.13 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.03 Total: 2.40 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -1.09 Total: -47.26 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.32 Total: -15.23 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.81 -8.17 -38.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756858326.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.060 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds