Wall clock time and date at job start Tue Mar 31 2020 05:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.47084 * 2 1 4 4 C 1.50707 * 109.46634 * 240.00418 * 2 1 3 5 5 H 1.07997 * 119.99262 * 239.99434 * 4 2 1 6 6 C 1.37874 * 119.99953 * 59.99786 * 4 2 1 7 7 N 1.31515 * 120.00429 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99514 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47120 * 90.00464 * 8 6 4 10 10 H 1.48502 * 109.47168 * 210.00048 * 8 6 4 11 11 H 1.48500 * 109.47544 * 329.99987 * 8 6 4 12 12 N 1.46890 * 109.47442 * 120.00486 * 2 1 3 13 13 C 1.46901 * 110.99877 * 287.50631 * 12 2 1 14 14 C 1.46895 * 111.00322 * 51.45529 * 12 2 1 15 15 N 1.46502 * 109.47456 * 154.76067 * 14 12 2 16 16 C 1.47107 * 124.34987 * 90.00029 * 15 14 12 17 17 C 1.53050 * 105.16220 * 164.27314 * 16 15 14 18 18 C 1.53400 * 111.82826 * 144.21638 * 17 16 15 19 19 C 1.55306 * 101.71052 * 102.30552 * 18 17 16 20 20 O 1.44520 * 103.68568 * 35.85313 * 19 18 17 21 21 C 1.44163 * 107.04951 * 320.82896 * 20 19 18 22 22 C 1.53204 * 103.33773 * 23.86488 * 17 16 15 23 23 C 1.34594 * 124.34829 * 269.98630 * 15 14 12 24 24 O 1.21278 * 124.94494 * 0.35408 * 23 15 14 25 25 H 1.09001 * 109.46807 * 293.73916 * 1 2 3 26 26 H 1.08999 * 109.47381 * 53.74033 * 1 2 3 27 27 H 1.08999 * 109.46697 * 173.74142 * 1 2 3 28 28 H 0.96998 * 119.99931 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47423 * 183.95403 * 13 12 2 30 30 H 1.09004 * 109.47260 * 303.95694 * 13 12 2 31 31 H 1.09003 * 109.47391 * 63.95453 * 13 12 2 32 32 H 1.09004 * 109.46854 * 34.76526 * 14 12 2 33 33 H 1.08991 * 109.48075 * 274.76457 * 14 12 2 34 34 H 1.09000 * 110.30165 * 45.35408 * 16 15 14 35 35 H 1.09005 * 110.30972 * 283.20267 * 16 15 14 36 36 H 1.09010 * 110.97893 * 220.40582 * 18 17 16 37 37 H 1.08995 * 110.98470 * 344.19462 * 18 17 16 38 38 H 1.09007 * 110.57903 * 277.30680 * 19 18 17 39 39 H 1.08998 * 110.71326 * 154.46563 * 19 18 17 40 40 H 1.08998 * 110.00747 * 266.81799 * 21 20 19 41 41 H 1.08999 * 109.99972 * 145.45338 * 21 20 19 42 42 H 1.08990 * 110.54922 * 95.28635 * 22 17 16 43 43 H 1.08996 * 110.54249 * 218.09555 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3223 -1.1194 -4.0080 9 1 1.3445 -2.1614 -4.4125 10 1 2.4870 -0.1401 -5.1121 11 1 3.6307 -1.7565 -3.7122 12 7 2.0198 -0.6925 1.1993 13 6 1.8063 0.1231 2.4022 14 6 1.3897 -2.0120 1.3395 15 7 2.2663 -2.8919 2.1164 16 6 2.2232 -3.0237 3.5809 17 6 3.0037 -4.3033 3.8908 18 6 3.8022 -4.1826 5.1950 19 6 2.9135 -4.9852 6.1841 20 8 2.3890 -6.0622 5.3758 21 6 2.0862 -5.5090 4.0794 22 6 3.9225 -4.4601 2.6749 23 6 3.2145 -3.6836 1.5819 24 8 3.4661 -3.7642 0.3983 25 1 -0.3633 0.4137 0.9407 26 1 -0.3634 0.6078 -0.8286 27 1 -0.3633 -1.0216 -0.1120 28 1 0.7085 1.1614 -3.4844 29 1 2.2405 -0.3816 3.2653 30 1 2.2830 1.0947 2.2717 31 1 0.7371 0.2616 2.5624 32 1 1.2254 -2.4430 0.3518 33 1 0.4342 -1.9059 1.8529 34 1 1.1922 -3.1176 3.9220 35 1 2.7016 -2.1652 4.0524 36 1 4.7860 -4.6411 5.0942 37 1 3.8886 -3.1412 5.5049 38 1 2.1040 -4.3619 6.5641 39 1 3.5108 -5.3791 7.0064 40 1 1.0435 -5.1935 4.0429 41 1 2.2795 -6.2498 3.3035 42 1 4.9024 -4.0282 2.8777 43 1 4.0158 -5.5104 2.3989 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756858330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:48 Heat of formation + Delta-G solvation = -59.490938 kcal Electronic energy + Delta-G solvation = -23629.281492 eV Core-core repulsion = 20289.034562 eV Total energy + Delta-G solvation = -3340.246930 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.04001 -38.74845 -37.05867 -35.75669 -33.11784 -32.17796 -30.19694 -28.81085 -27.99930 -27.00476 -25.25411 -24.69357 -23.37080 -22.90140 -20.08079 -19.86148 -18.94761 -16.67243 -16.56489 -16.24047 -15.94437 -15.40000 -15.21323 -15.05075 -14.51208 -13.99293 -13.84895 -13.55056 -13.49564 -13.32265 -12.77903 -12.50176 -12.27106 -12.09488 -11.91330 -11.81469 -11.54227 -11.49210 -11.10122 -10.98330 -10.90441 -10.73411 -10.70613 -10.45070 -10.12898 -9.90627 -9.88021 -9.31449 -8.93922 -8.45113 -8.27736 -7.28961 -5.96062 -3.97958 3.02081 3.35966 3.39488 3.44892 3.55518 3.63789 4.04850 4.11686 4.45106 4.51182 4.65189 4.78700 4.89053 5.07347 5.23734 5.32615 5.36702 5.37913 5.41496 5.45459 5.50023 5.58868 5.60637 5.68366 5.77176 5.78967 5.89188 6.04709 6.33176 6.35812 6.55490 6.67373 6.74991 6.86892 7.09553 7.28459 7.57525 7.63347 7.95030 8.08726 8.32116 8.57086 8.65438 9.14298 9.68212 11.11571 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026442 B = 0.004659 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.659948 B = 6008.600226 C = 6650.977144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.216 3.784 3 H 0.042 0.958 4 C -0.500 4.500 5 H 0.072 0.928 6 C 0.059 3.941 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.272 1.272 12 N -0.547 5.547 13 C 0.027 3.973 14 C 0.299 3.701 15 N -0.609 5.609 16 C 0.117 3.883 17 C -0.109 4.109 18 C -0.138 4.138 19 C 0.046 3.954 20 O -0.379 6.379 21 C 0.063 3.937 22 C -0.140 4.140 23 C 0.517 3.483 24 O -0.512 6.512 25 H 0.007 0.993 26 H 0.087 0.913 27 H 0.030 0.970 28 H 0.259 0.741 29 H 0.047 0.953 30 H 0.060 0.940 31 H 0.017 0.983 32 H 0.108 0.892 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.901 -8.687 18.251 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.110 3.890 3 H 0.059 0.941 4 C -0.538 4.538 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.196 1.196 12 N -0.273 5.273 13 C -0.122 4.122 14 C 0.088 3.912 15 N -0.346 5.346 16 C -0.007 4.007 17 C -0.110 4.110 18 C -0.176 4.176 19 C -0.031 4.031 20 O -0.298 6.298 21 C -0.014 4.014 22 C -0.180 4.180 23 C 0.303 3.697 24 O -0.386 6.386 25 H 0.026 0.974 26 H 0.106 0.894 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.126 0.874 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.123 0.877 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.374 -8.843 17.403 19.664 hybrid contribution -0.588 0.191 -0.707 0.939 sum 1.786 -8.652 16.696 18.889 Atomic orbital electron populations 1.22444 1.00561 1.00338 0.99540 1.19317 0.89723 0.94415 0.85542 0.94065 1.21260 1.30507 1.12716 0.89341 0.91021 1.24898 0.95166 0.95049 0.99028 1.69900 1.37415 1.23197 1.23360 0.86513 0.79666 0.79169 0.82254 1.20842 1.21479 1.19626 1.62011 1.59186 1.02568 1.03515 1.22359 0.98218 0.98171 0.93442 1.21804 0.86918 0.86313 0.96153 1.48663 1.37382 1.42254 1.06257 1.22045 1.00313 0.95988 0.82314 1.21890 0.96572 0.96218 0.96307 1.23050 0.99447 1.02074 0.93043 1.23632 0.96242 0.88933 0.94275 1.88964 1.84510 1.32899 1.23452 1.23150 0.97875 0.94317 0.86024 1.22343 0.99608 1.02653 0.93403 1.20758 0.79799 0.80109 0.89013 1.90783 1.65206 1.66098 1.16481 0.97373 0.89394 0.95105 0.93135 0.93441 0.92151 0.96460 0.87425 0.94027 0.90697 0.90918 0.89619 0.89382 0.92012 0.88932 0.91554 0.89195 0.87697 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.99 8.15 37.16 0.30 -3.68 16 2 C 0.22 5.42 2.28 -68.86 -0.16 5.26 16 3 H 0.04 1.14 7.97 -51.93 -0.41 0.72 16 4 C -0.50 -14.15 7.67 -34.44 -0.26 -14.41 16 5 H 0.07 2.17 7.56 -52.49 -0.40 1.77 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.90 -25.90 11.39 55.43 0.63 -25.27 16 8 Si 0.90 22.62 29.54 -169.99 -5.02 17.60 16 9 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 12 N -0.55 -11.67 4.78 -240.19 -1.15 -12.82 16 13 C 0.03 0.47 9.21 60.07 0.55 1.02 16 14 C 0.30 5.77 4.21 -63.32 -0.27 5.50 16 15 N -0.61 -9.88 3.16 -176.33 -0.56 -10.44 16 16 C 0.12 1.31 6.03 -3.69 -0.02 1.29 16 17 C -0.11 -1.06 0.85 -154.33 -0.13 -1.19 16 18 C -0.14 -1.01 6.23 -25.30 -0.16 -1.17 16 19 C 0.05 0.34 7.74 38.38 0.30 0.64 16 20 O -0.38 -3.97 11.55 -35.23 -0.41 -4.37 16 21 C 0.06 0.62 7.10 36.99 0.26 0.88 16 22 C -0.14 -1.66 5.91 -27.33 -0.16 -1.82 16 23 C 0.52 9.13 8.05 -10.62 -0.09 9.05 16 24 O -0.51 -11.84 17.60 5.56 0.10 -11.74 16 25 H 0.01 0.16 6.65 -51.93 -0.35 -0.19 16 26 H 0.09 2.30 6.26 -51.93 -0.33 1.97 16 27 H 0.03 0.70 7.00 -51.93 -0.36 0.34 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.05 0.69 6.30 -51.93 -0.33 0.37 16 30 H 0.06 1.05 8.03 -51.93 -0.42 0.63 16 31 H 0.02 0.29 6.69 -51.93 -0.35 -0.06 16 32 H 0.11 2.47 6.23 -51.93 -0.32 2.15 16 33 H 0.04 0.73 7.62 -51.93 -0.40 0.33 16 34 H 0.07 0.74 7.44 -51.93 -0.39 0.36 16 35 H 0.07 0.77 6.24 -51.93 -0.32 0.45 16 36 H 0.09 0.59 7.88 -51.92 -0.41 0.18 16 37 H 0.09 0.55 7.46 -51.93 -0.39 0.16 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.63 7.35 -51.93 -0.38 0.25 16 41 H 0.09 0.89 7.36 -51.93 -0.38 0.50 16 42 H 0.10 1.14 7.86 -51.93 -0.41 0.73 16 43 H 0.10 1.10 7.47 -51.93 -0.39 0.71 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -32.78 332.02 -8.03 -40.80 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.70 Total: -1.71 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 0.08 Total: 2.95 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -1.07 Total: -48.53 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.31 Total: -16.12 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.78 -8.03 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756858330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.690 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds