Wall clock time and date at job start Tue Mar 31 2020 06:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42900 * 109.47056 * 2 1 4 4 C 1.42902 * 113.99992 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.57541 * 29.84313 * 4 3 2 6 6 C 1.53094 * 109.52293 * 269.68674 * 4 3 2 7 7 O 1.42904 * 109.41532 * 297.70045 * 6 4 3 8 8 C 1.42900 * 114.09885 * 298.84598 * 7 6 4 9 9 C 1.53091 * 109.41792 * 61.15532 * 8 7 6 10 10 C 1.53178 * 109.52041 * 149.99941 * 4 3 2 11 11 H 1.09005 * 109.61528 * 182.83527 * 10 4 3 12 12 N 1.46898 * 109.54338 * 303.06022 * 10 4 3 13 13 C 1.46907 * 110.99723 * 204.55714 * 12 10 4 14 14 C 1.52998 * 109.46923 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.47193 * 305.00000 * 14 13 12 16 16 C 1.47202 * 109.47028 * 65.00152 * 14 13 12 17 17 N 6.36685 * 86.25173 * 316.97242 * 2 1 3 18 18 C 1.53001 * 109.47197 * 184.99875 * 14 13 12 19 19 C 1.50694 * 109.47168 * 175.00067 * 18 14 13 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 14 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 14 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.09000 * 109.46799 * 59.99938 * 1 2 3 28 28 H 1.08999 * 109.46572 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46947 * 299.99963 * 1 2 3 30 30 H 1.08998 * 109.47410 * 240.00025 * 2 1 3 31 31 H 1.09006 * 109.47065 * 119.99712 * 2 1 3 32 32 H 1.09001 * 109.48200 * 177.72094 * 6 4 3 33 33 H 1.08994 * 109.48846 * 57.69240 * 6 4 3 34 34 H 1.08998 * 109.47820 * 301.17502 * 8 7 6 35 35 H 1.08997 * 109.48405 * 181.13812 * 8 7 6 36 36 H 1.09002 * 109.52615 * 182.48766 * 9 8 7 37 37 H 1.08998 * 109.52010 * 62.29622 * 9 8 7 38 38 H 1.00894 * 111.00126 * 328.50540 * 12 10 4 39 39 H 1.09007 * 109.47208 * 59.99959 * 13 12 10 40 40 H 1.09000 * 109.47152 * 299.99818 * 13 12 10 41 41 H 1.09007 * 109.46922 * 54.99769 * 18 14 13 42 42 H 1.09003 * 109.46836 * 295.00525 * 18 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8655 0.6009 -0.5102 6 6 3.9397 1.5086 1.4437 7 8 3.4145 2.6678 2.0939 8 6 3.8056 3.9027 1.4906 9 6 3.2915 3.9504 0.0494 10 6 3.8427 2.7468 -0.7213 11 1 4.9300 2.8094 -0.7660 12 7 3.2943 2.7428 -2.0841 13 6 4.0911 3.5972 -2.9747 14 6 3.4909 3.5671 -4.3817 15 1 3.4158 2.5345 -4.7226 16 6 2.1502 4.1742 -4.3564 17 7 1.1138 4.6444 -4.3351 18 6 4.3897 4.3553 -5.3366 19 6 3.8658 4.2236 -6.7434 20 1 2.9801 3.6367 -6.9371 21 6 4.5172 4.8523 -7.7834 22 7 5.5955 5.5674 -7.5475 23 14 3.8681 4.6884 -9.5273 24 1 4.7405 5.4536 -10.4541 25 1 3.8625 3.2566 -9.9208 26 1 2.4852 5.2254 -9.5932 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 5.0288 1.5539 1.4439 33 1 3.6130 0.6146 1.9747 34 1 4.8929 3.9792 1.4913 35 1 3.3822 4.7333 2.0552 36 1 3.6263 4.8721 -0.4266 37 1 2.2021 3.9146 0.0499 38 1 3.2313 1.8030 -2.4457 39 1 5.1166 3.2294 -3.0095 40 1 4.0846 4.6202 -2.5984 41 1 5.4049 3.9612 -5.2885 42 1 4.3939 5.4062 -5.0473 43 1 6.0540 6.0093 -8.2792 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776487509.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:47 Heat of formation + Delta-G solvation = -100.962910 kcal Electronic energy + Delta-G solvation = -22587.298216 eV Core-core repulsion = 19245.252926 eV Total energy + Delta-G solvation = -3342.045290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89262 -38.63085 -38.05357 -36.63300 -35.45033 -33.86769 -32.34038 -31.72944 -30.46189 -28.23340 -25.45678 -24.51897 -23.86866 -23.47051 -23.21680 -20.98761 -18.68010 -18.37273 -17.64548 -17.42105 -17.04063 -16.66869 -16.49413 -16.02355 -15.56944 -15.38220 -15.18351 -14.86332 -14.62394 -14.21027 -13.96268 -13.78187 -13.69597 -13.45203 -13.20414 -13.12934 -13.00207 -12.85469 -12.56723 -12.46743 -12.37351 -12.23856 -12.08085 -11.89567 -11.62754 -11.37015 -11.34816 -11.13425 -10.89467 -10.54737 -10.00450 -9.28627 -8.19375 -6.27435 1.40810 1.43062 1.49762 2.07102 2.14679 2.41668 2.70279 2.97299 3.16064 3.21578 3.36460 3.67516 3.90520 3.95346 4.18876 4.24174 4.26808 4.28201 4.39811 4.41298 4.49239 4.53238 4.55140 4.62640 4.76183 4.76404 4.84390 4.90341 4.91994 5.02797 5.07924 5.09608 5.30139 5.39312 5.46760 5.62455 5.79235 6.03754 6.20379 6.24919 6.48647 6.55018 6.83599 6.94917 7.41094 8.91312 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022996 B = 0.003607 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.333634 B = 7761.724947 C = 8358.697262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.381 6.381 4 C 0.054 3.946 5 H 0.089 0.911 6 C 0.040 3.960 7 O -0.395 6.395 8 C 0.064 3.936 9 C -0.138 4.138 10 C 0.092 3.908 11 H 0.076 0.924 12 N -0.689 5.689 13 C 0.079 3.921 14 C 0.022 3.978 15 H 0.119 0.881 16 C 0.265 3.735 17 N -0.518 5.518 18 C 0.039 3.961 19 C -0.540 4.540 20 H 0.053 0.947 21 C 0.013 3.987 22 N -0.923 5.923 23 Si 0.947 3.053 24 H -0.282 1.282 25 H -0.262 1.262 26 H -0.283 1.283 27 H 0.045 0.955 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.348 0.652 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.038 0.962 42 H -0.001 1.001 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.096 -12.963 18.945 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.300 6.300 4 C -0.004 4.004 5 H 0.107 0.893 6 C -0.037 4.037 7 O -0.314 6.314 8 C -0.013 4.013 9 C -0.177 4.177 10 C -0.018 4.018 11 H 0.094 0.906 12 N -0.322 5.322 13 C -0.051 4.051 14 C 0.000 4.000 15 H 0.137 0.863 16 C -0.051 4.051 17 N -0.196 5.196 18 C 0.000 4.000 19 C -0.578 4.578 20 H 0.071 0.929 21 C -0.186 4.186 22 N -0.563 5.563 23 Si 0.773 3.227 24 H -0.207 1.207 25 H -0.187 1.187 26 H -0.209 1.209 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.168 0.832 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.048 -11.525 19.182 22.402 hybrid contribution 0.961 -0.439 -1.656 1.965 sum -0.087 -11.964 17.525 21.220 Atomic orbital electron populations 1.21717 0.94114 1.02849 1.01917 1.22639 0.95650 0.83600 1.00604 1.88089 1.20151 1.26846 1.94949 1.23018 0.82819 0.97931 0.96662 0.89276 1.23216 0.98809 0.89261 0.92419 1.87918 1.74793 1.14488 1.54185 1.22662 0.99571 0.86594 0.92509 1.22083 1.01410 0.98283 0.95913 1.21686 0.97342 0.94554 0.88202 0.90594 1.60302 1.54106 1.16161 1.01613 1.21947 0.95435 0.98622 0.89132 1.19189 0.83233 1.00479 0.97124 0.86307 1.29514 0.94404 0.91645 0.89552 1.81075 1.14392 1.11769 1.12318 1.18984 0.94753 0.94441 0.91831 1.21530 1.11485 1.31180 0.93642 0.92873 1.25692 0.95166 0.94899 1.02861 1.70021 1.19597 1.33279 1.33388 0.85774 0.77875 0.78889 0.80190 1.20693 1.18653 1.20865 0.93542 0.89273 0.92853 0.92581 0.92367 0.90221 0.87785 0.91402 0.88409 0.91505 0.92836 0.83188 0.91049 0.91460 0.94390 0.98237 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.05 0.88 6.47 71.98 0.47 1.35 16 3 O -0.38 -8.80 9.21 -141.83 -1.31 -10.10 16 4 C 0.05 0.96 2.30 30.69 0.07 1.03 16 5 H 0.09 1.17 7.79 -2.39 -0.02 1.15 16 6 C 0.04 0.63 6.49 72.01 0.47 1.10 16 7 O -0.40 -8.62 10.70 -141.83 -1.52 -10.13 16 8 C 0.06 1.21 6.84 72.01 0.49 1.71 16 9 C -0.14 -3.23 5.47 30.68 0.17 -3.06 16 10 C 0.09 1.87 2.36 45.03 0.11 1.98 16 11 H 0.08 1.28 7.81 -2.38 -0.02 1.26 16 12 N -0.69 -16.98 5.83 -490.93 -2.86 -19.84 16 13 C 0.08 2.15 4.85 86.30 0.42 2.57 16 14 C 0.02 0.76 2.35 -12.60 -0.03 0.73 16 15 H 0.12 3.74 8.14 -2.39 -0.02 3.73 16 16 C 0.26 11.19 13.68 89.42 1.22 12.41 16 17 N -0.52 -24.29 18.55 20.03 0.37 -23.91 16 18 C 0.04 1.76 4.42 29.85 0.13 1.90 16 19 C -0.54 -28.51 8.60 25.60 0.22 -28.29 16 20 H 0.05 2.78 7.59 -2.91 -0.02 2.76 16 21 C 0.01 0.70 5.46 84.66 0.46 1.16 16 22 N -0.92 -52.72 13.29 21.45 0.28 -52.44 16 23 Si 0.95 43.31 29.54 68.60 2.03 45.34 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 26 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 31 H 0.06 0.80 7.86 -2.38 -0.02 0.78 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 1.38 7.86 -2.39 -0.02 1.36 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 1.59 7.55 -2.39 -0.02 1.57 16 37 H 0.05 1.61 7.83 -2.39 -0.02 1.59 16 38 H 0.35 7.62 8.37 -89.70 -0.75 6.87 16 39 H 0.07 1.65 8.06 -2.38 -0.02 1.63 16 40 H 0.07 1.99 7.51 -2.39 -0.02 1.97 16 41 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 43 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -68.09 355.90 2.17 -65.91 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.23 Total: 12.49 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 4.94 Total: -7.31 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -2.20 Total: -96.19 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -2.82 Total: -20.24 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -68.09 2.17 -65.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776487509.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.048 kcal (2) G-P(sol) polarization free energy of solvation -68.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds