Wall clock time and date at job start Tue Mar 31 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.52228 * 30.00024 * 4 3 2 6 6 C 1.53084 * 109.52241 * 269.87333 * 4 3 2 7 7 O 1.42905 * 109.41446 * 182.48460 * 6 4 3 8 8 C 1.42905 * 114.09792 * 61.15960 * 7 6 4 9 9 C 1.53093 * 109.41214 * 298.84034 * 8 7 6 10 10 C 1.53179 * 109.52106 * 150.12226 * 4 3 2 11 11 H 1.09003 * 109.54604 * 57.02432 * 10 4 3 12 12 N 1.46906 * 109.54471 * 296.75283 * 10 4 3 13 13 C 1.46902 * 110.99662 * 155.00366 * 12 10 4 14 14 C 1.52999 * 109.46829 * 180.02562 * 13 12 10 15 15 H 1.08992 * 109.47092 * 304.99449 * 14 13 12 16 16 C 1.47200 * 109.47202 * 65.00151 * 14 13 12 17 17 N 5.22062 * 78.12498 * 303.23952 * 2 1 3 18 18 C 1.53000 * 109.46683 * 184.99809 * 14 13 12 19 19 C 1.50703 * 109.46704 * 174.99881 * 18 14 13 20 20 H 1.07998 * 120.00097 * 0.02562 * 19 18 14 21 21 C 1.37882 * 119.99869 * 179.97438 * 19 18 14 22 22 N 1.31509 * 120.00050 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47301 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47145 * 120.00561 * 23 21 19 26 26 H 1.48499 * 109.47154 * 240.00312 * 23 21 19 27 27 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 32 32 H 1.08998 * 109.48234 * 302.46755 * 6 4 3 33 33 H 1.09001 * 109.48125 * 62.48780 * 6 4 3 34 34 H 1.08998 * 109.48258 * 58.82257 * 8 7 6 35 35 H 1.09001 * 109.47845 * 178.85798 * 8 7 6 36 36 H 1.09001 * 109.52173 * 177.51326 * 9 8 7 37 37 H 1.08998 * 109.52248 * 297.64211 * 9 8 7 38 38 H 1.00892 * 110.99717 * 31.04915 * 12 10 4 39 39 H 1.09007 * 109.46989 * 300.00081 * 13 12 10 40 40 H 1.08995 * 109.47557 * 59.99846 * 13 12 10 41 41 H 1.09000 * 109.47382 * 294.99503 * 18 14 13 42 42 H 1.08998 * 109.47504 * 55.00358 * 18 14 13 43 43 H 0.96997 * 120.00328 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8645 0.6018 -0.5128 6 6 3.9401 1.5038 1.4436 7 8 5.3588 1.6748 1.4418 8 6 5.7997 2.8865 0.8256 9 6 5.3653 2.8982 -0.6423 10 6 3.8427 2.7483 -0.7186 11 1 3.3684 3.6029 -0.2361 12 7 3.4241 2.6811 -2.1252 13 6 3.2460 4.0271 -2.6862 14 6 2.8104 3.9164 -4.1487 15 1 3.5301 3.3088 -4.6971 16 6 1.4819 3.2865 -4.2187 17 7 0.4557 2.8004 -4.2730 18 6 2.7455 5.3138 -4.7685 19 6 2.4366 5.1971 -6.2389 20 1 2.2998 4.2238 -6.6864 21 6 2.3275 6.3331 -7.0127 22 7 2.4936 7.5184 -6.4677 23 14 1.9439 6.1886 -8.8352 24 1 1.8035 4.7558 -9.1993 25 1 0.6752 6.9010 -9.1320 26 1 3.0475 6.7941 -9.6229 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.4741 2.3378 1.9684 33 1 3.6868 0.5707 1.9469 34 1 5.3581 3.7386 1.3422 35 1 6.8864 2.9493 0.8837 36 1 5.6620 3.8407 -1.1025 37 1 5.8396 2.0703 -1.1692 38 1 2.5831 2.1330 -2.2264 39 1 2.4819 4.5589 -2.1191 40 1 4.1876 4.5728 -2.6274 41 1 1.9633 5.8930 -4.2778 42 1 3.7048 5.8144 -4.6375 43 1 2.4173 8.3176 -7.0120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776487518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:49 Heat of formation + Delta-G solvation = -84.863209 kcal Electronic energy + Delta-G solvation = -22546.919940 eV Core-core repulsion = 19205.572785 eV Total energy + Delta-G solvation = -3341.347155 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.10566 -37.67636 -37.29753 -35.35006 -33.72863 -32.35976 -31.69798 -30.53240 -29.52933 -26.59583 -24.28601 -23.70132 -22.93183 -22.19967 -21.79203 -20.32932 -17.36484 -16.81098 -16.68787 -16.47090 -16.34916 -15.57899 -15.35477 -14.87374 -14.63315 -14.55248 -13.88932 -13.48635 -13.31799 -13.01199 -12.87140 -12.67191 -12.53718 -12.39264 -12.12419 -11.90026 -11.71097 -11.51660 -11.35841 -11.19699 -11.06360 -11.00961 -10.71653 -10.63719 -10.48539 -10.25302 -10.20362 -9.63816 -9.39503 -9.18942 -8.46227 -8.36714 -6.09764 -4.12708 3.21995 3.28377 3.36594 3.41325 3.58819 3.64142 3.75741 4.09569 4.41543 4.44717 4.61167 4.81659 4.83645 4.86806 4.90076 5.01573 5.05836 5.15949 5.26409 5.28440 5.33606 5.42370 5.45155 5.51856 5.58889 5.69014 5.72565 5.74601 5.86064 5.97358 6.08271 6.16780 6.37282 6.54622 6.77227 7.07373 7.08408 7.42515 7.45187 7.53493 7.85638 8.23209 8.42569 8.92113 9.52805 11.01222 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020316 B = 0.003830 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.898649 B = 7308.765225 C = 8418.399985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.379 6.379 4 C 0.054 3.946 5 H 0.078 0.922 6 C 0.045 3.955 7 O -0.378 6.378 8 C 0.057 3.943 9 C -0.143 4.143 10 C 0.090 3.910 11 H 0.054 0.946 12 N -0.684 5.684 13 C 0.068 3.932 14 C 0.008 3.992 15 H 0.110 0.890 16 C 0.240 3.760 17 N -0.475 5.475 18 C 0.032 3.968 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.062 3.938 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.282 1.282 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.346 0.654 39 H 0.036 0.964 40 H 0.090 0.910 41 H 0.024 0.976 42 H 0.040 0.960 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.437 -11.481 16.819 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.298 6.298 4 C -0.005 4.005 5 H 0.096 0.904 6 C -0.033 4.033 7 O -0.297 6.297 8 C -0.020 4.020 9 C -0.181 4.181 10 C -0.020 4.020 11 H 0.072 0.928 12 N -0.316 5.316 13 C -0.062 4.062 14 C -0.014 4.014 15 H 0.128 0.872 16 C -0.076 4.076 17 N -0.152 5.152 18 C -0.006 4.006 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.530 5.530 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.208 1.208 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.165 0.835 39 H 0.054 0.946 40 H 0.108 0.892 41 H 0.042 0.958 42 H 0.058 0.942 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.516 -12.078 16.529 20.963 hybrid contribution -0.786 0.526 -0.828 1.257 sum 3.730 -11.552 15.701 19.846 Atomic orbital electron populations 1.21754 0.93572 1.02284 1.03402 1.22548 0.95747 0.83477 1.00127 1.87932 1.20066 1.26878 1.94911 1.22957 0.81745 0.99489 0.96303 0.90388 1.22993 0.81765 1.02531 0.95962 1.87940 1.20912 1.41407 1.79427 1.22711 1.00347 0.86696 0.92275 1.22271 0.94650 1.04401 0.96819 1.21605 0.95598 0.95730 0.89081 0.92794 1.60645 1.40038 1.15602 1.15320 1.22126 1.01183 0.89199 0.93715 1.19313 0.85722 1.00613 0.95795 0.87205 1.29324 0.94899 0.91720 0.91686 1.81051 1.12308 1.11869 1.09974 1.19167 0.98849 0.87095 0.95526 1.21187 1.48838 0.92870 0.93450 0.92450 1.24951 0.95029 0.95307 0.98679 1.69944 1.49640 0.97488 1.35978 0.86540 0.78001 0.78312 0.85261 1.19673 1.21007 1.20814 0.91474 0.91953 0.91082 0.93457 0.92995 0.92304 0.88866 0.92983 0.88286 0.89728 0.89920 0.83513 0.94590 0.89160 0.95756 0.94223 0.92859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.07 16 2 C 0.06 0.57 6.47 37.16 0.24 0.81 16 3 O -0.38 -4.60 9.29 -35.23 -0.33 -4.93 16 4 C 0.05 0.59 2.31 -26.60 -0.06 0.53 16 5 H 0.08 0.87 7.79 -51.93 -0.40 0.46 16 6 C 0.05 0.44 6.46 37.20 0.24 0.68 16 7 O -0.38 -4.02 10.77 -35.23 -0.38 -4.40 16 8 C 0.06 0.51 6.84 37.21 0.25 0.76 16 9 C -0.14 -1.43 5.63 -26.59 -0.15 -1.58 16 10 C 0.09 1.06 2.28 -67.52 -0.15 0.91 16 11 H 0.05 0.68 7.80 -51.93 -0.41 0.27 16 12 N -0.68 -9.42 6.31 -106.52 -0.67 -10.09 16 13 C 0.07 1.03 4.92 -3.82 -0.02 1.01 16 14 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 15 H 0.11 1.96 8.14 -51.93 -0.42 1.54 16 16 C 0.24 4.97 12.98 -20.73 -0.27 4.70 16 17 N -0.48 -10.52 18.54 42.18 0.78 -9.74 16 18 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 19 C -0.53 -14.05 8.60 -34.44 -0.30 -14.34 16 20 H 0.06 1.53 7.59 -52.49 -0.40 1.14 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 23 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.38 7.94 -51.93 -0.41 -0.03 16 31 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.79 7.94 -51.93 -0.41 0.38 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.81 7.58 -51.93 -0.39 0.42 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.35 5.21 6.86 -39.30 -0.27 4.94 16 39 H 0.04 0.57 8.06 -51.93 -0.42 0.15 16 40 H 0.09 1.25 7.54 -51.93 -0.39 0.86 16 41 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -30.18 355.06 -7.10 -37.28 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -7.29 Total: 0.45 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.28 Total: -5.43 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.85 Total: -44.67 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.71 Total: -9.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.18 -7.10 -37.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776487518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.583 kcal (2) G-P(sol) polarization free energy of solvation -30.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds