Wall clock time and date at job start Tue Mar 31 2020 06:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.42902 * 114.00370 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.52228 * 30.00024 * 4 3 2 6 6 C 1.53084 * 109.52241 * 269.87333 * 4 3 2 7 7 O 1.42905 * 109.41446 * 182.48460 * 6 4 3 8 8 C 1.42905 * 114.09792 * 61.15960 * 7 6 4 9 9 C 1.53093 * 109.41214 * 298.84034 * 8 7 6 10 10 C 1.53179 * 109.52106 * 150.12226 * 4 3 2 11 11 H 1.09003 * 109.54604 * 57.02432 * 10 4 3 12 12 N 1.46906 * 109.54471 * 296.75283 * 10 4 3 13 13 C 1.46902 * 110.99662 * 155.00366 * 12 10 4 14 14 C 1.52999 * 109.46829 * 180.02562 * 13 12 10 15 15 H 1.08992 * 109.47092 * 304.99449 * 14 13 12 16 16 C 1.47200 * 109.47202 * 65.00151 * 14 13 12 17 17 N 5.22062 * 78.12498 * 303.23952 * 2 1 3 18 18 C 1.53000 * 109.46683 * 184.99809 * 14 13 12 19 19 C 1.50703 * 109.46704 * 174.99881 * 18 14 13 20 20 H 1.07998 * 120.00097 * 0.02562 * 19 18 14 21 21 C 1.37882 * 119.99869 * 179.97438 * 19 18 14 22 22 N 1.31509 * 120.00050 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99821 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47301 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47145 * 120.00561 * 23 21 19 26 26 H 1.48499 * 109.47154 * 240.00312 * 23 21 19 27 27 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 32 32 H 1.08998 * 109.48234 * 302.46755 * 6 4 3 33 33 H 1.09001 * 109.48125 * 62.48780 * 6 4 3 34 34 H 1.08998 * 109.48258 * 58.82257 * 8 7 6 35 35 H 1.09001 * 109.47845 * 178.85798 * 8 7 6 36 36 H 1.09001 * 109.52173 * 177.51326 * 9 8 7 37 37 H 1.08998 * 109.52248 * 297.64211 * 9 8 7 38 38 H 1.00892 * 110.99717 * 31.04915 * 12 10 4 39 39 H 1.09007 * 109.46989 * 300.00081 * 13 12 10 40 40 H 1.08995 * 109.47557 * 59.99846 * 13 12 10 41 41 H 1.09000 * 109.47382 * 294.99503 * 18 14 13 42 42 H 1.08998 * 109.47504 * 55.00358 * 18 14 13 43 43 H 0.96997 * 120.00328 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8645 0.6018 -0.5128 6 6 3.9401 1.5038 1.4436 7 8 5.3588 1.6748 1.4418 8 6 5.7997 2.8865 0.8256 9 6 5.3653 2.8982 -0.6423 10 6 3.8427 2.7483 -0.7186 11 1 3.3684 3.6029 -0.2361 12 7 3.4241 2.6811 -2.1252 13 6 3.2460 4.0271 -2.6862 14 6 2.8104 3.9164 -4.1487 15 1 3.5301 3.3088 -4.6971 16 6 1.4819 3.2865 -4.2187 17 7 0.4557 2.8004 -4.2730 18 6 2.7455 5.3138 -4.7685 19 6 2.4366 5.1971 -6.2389 20 1 2.2998 4.2238 -6.6864 21 6 2.3275 6.3331 -7.0127 22 7 2.4936 7.5184 -6.4677 23 14 1.9439 6.1886 -8.8352 24 1 1.8035 4.7558 -9.1993 25 1 0.6752 6.9010 -9.1320 26 1 3.0475 6.7941 -9.6229 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.4741 2.3378 1.9684 33 1 3.6868 0.5707 1.9469 34 1 5.3581 3.7386 1.3422 35 1 6.8864 2.9493 0.8837 36 1 5.6620 3.8407 -1.1025 37 1 5.8396 2.0703 -1.1692 38 1 2.5831 2.1330 -2.2264 39 1 2.4819 4.5589 -2.1191 40 1 4.1876 4.5728 -2.6274 41 1 1.9633 5.8930 -4.2778 42 1 3.7048 5.8144 -4.6375 43 1 2.4173 8.3176 -7.0120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776487518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:49 Heat of formation + Delta-G solvation = -104.887177 kcal Electronic energy + Delta-G solvation = -22547.788244 eV Core-core repulsion = 19205.572785 eV Total energy + Delta-G solvation = -3342.215459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95378 -38.75966 -38.48166 -36.66653 -35.51581 -33.91861 -32.52895 -31.73900 -30.42933 -28.25489 -25.51381 -24.51300 -23.87192 -23.61279 -23.22899 -21.20095 -18.59715 -18.30041 -18.08816 -17.54868 -17.30341 -16.66366 -16.38969 -16.25758 -15.75137 -15.55364 -15.12309 -14.71845 -14.54161 -14.39930 -14.00253 -13.93237 -13.89500 -13.54796 -13.34251 -13.19483 -13.09700 -12.85205 -12.53503 -12.48036 -12.43436 -12.30303 -12.09324 -12.01172 -11.77808 -11.53453 -11.36601 -11.12969 -10.97594 -10.56194 -10.24853 -9.49018 -8.20169 -6.28358 1.38752 1.41753 1.52244 1.92343 1.94395 2.40999 2.43372 2.94199 3.11726 3.14891 3.23652 3.60482 3.81226 3.98239 4.09646 4.12201 4.18846 4.23696 4.27800 4.33921 4.42754 4.45087 4.59727 4.65848 4.70421 4.73256 4.79869 4.89776 4.92627 4.96525 4.98204 5.09898 5.20094 5.30786 5.46193 5.61047 5.78434 5.95100 6.01967 6.20066 6.24880 6.30706 6.73756 6.86413 7.40324 8.91031 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020316 B = 0.003830 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.898649 B = 7308.765225 C = 8418.399985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.399 6.399 4 C 0.057 3.943 5 H 0.076 0.924 6 C 0.049 3.951 7 O -0.390 6.390 8 C 0.056 3.944 9 C -0.137 4.137 10 C 0.087 3.913 11 H 0.047 0.953 12 N -0.681 5.681 13 C 0.079 3.921 14 C 0.020 3.980 15 H 0.124 0.876 16 C 0.248 3.752 17 N -0.502 5.502 18 C 0.039 3.961 19 C -0.539 4.539 20 H 0.053 0.947 21 C 0.012 3.988 22 N -0.923 5.923 23 Si 0.949 3.051 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.272 1.272 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.337 0.663 39 H 0.028 0.972 40 H 0.109 0.891 41 H -0.001 1.001 42 H 0.038 0.962 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.447 -12.359 17.370 22.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 O -0.319 6.319 4 C -0.002 4.002 5 H 0.094 0.906 6 C -0.029 4.029 7 O -0.308 6.308 8 C -0.021 4.021 9 C -0.176 4.176 10 C -0.023 4.023 11 H 0.065 0.935 12 N -0.312 5.312 13 C -0.051 4.051 14 C -0.002 4.002 15 H 0.142 0.858 16 C -0.068 4.068 17 N -0.180 5.180 18 C 0.000 4.000 19 C -0.577 4.577 20 H 0.072 0.928 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.775 3.225 24 H -0.194 1.194 25 H -0.211 1.211 26 H -0.197 1.197 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.155 0.845 39 H 0.046 0.954 40 H 0.127 0.873 41 H 0.017 0.983 42 H 0.057 0.943 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.538 -12.967 17.088 22.154 hybrid contribution -1.115 0.788 -0.974 1.677 sum 4.424 -12.178 16.114 20.677 Atomic orbital electron populations 1.21763 0.93523 1.03321 1.02177 1.22698 0.95820 0.82739 1.01094 1.87910 1.20676 1.28284 1.95077 1.22949 0.81376 0.98802 0.97053 0.90570 1.22995 0.81479 1.03325 0.95054 1.87932 1.21182 1.42188 1.79538 1.22835 1.01535 0.86424 0.91272 1.22240 0.93031 1.04495 0.97814 1.21739 0.96808 0.96093 0.87698 0.93490 1.60668 1.39353 1.14316 1.16866 1.21978 1.01670 0.90215 0.91225 1.19230 0.85065 0.97857 0.98061 0.85845 1.29718 0.95075 0.91178 0.90792 1.81046 1.13120 1.12774 1.11057 1.18986 0.97648 0.89370 0.93974 1.21575 1.48214 0.92634 0.95257 0.92832 1.25703 0.95151 0.95179 1.02642 1.70032 1.50767 0.98083 1.37435 0.85640 0.77865 0.78252 0.80791 1.19417 1.21147 1.19694 0.93951 0.91817 0.88964 0.91275 0.93156 0.92271 0.87477 0.92274 0.86405 0.89170 0.90336 0.84471 0.95410 0.87316 0.98289 0.94327 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 10.28 71.98 0.74 -2.01 16 2 C 0.05 0.98 6.47 71.98 0.47 1.44 16 3 O -0.40 -9.41 9.29 -148.98 -1.38 -10.79 16 4 C 0.06 1.18 2.31 30.68 0.07 1.25 16 5 H 0.08 1.60 7.79 -2.39 -0.02 1.58 16 6 C 0.05 0.87 6.46 72.01 0.47 1.34 16 7 O -0.39 -7.46 10.77 -148.98 -1.60 -9.07 16 8 C 0.06 0.87 6.84 72.01 0.49 1.37 16 9 C -0.14 -2.49 5.63 30.69 0.17 -2.32 16 10 C 0.09 1.93 2.28 45.04 0.10 2.03 16 11 H 0.05 1.13 7.80 -2.39 -0.02 1.11 16 12 N -0.68 -18.06 6.31 -490.91 -3.10 -21.16 16 13 C 0.08 2.33 4.92 86.30 0.42 2.75 16 14 C 0.02 0.72 2.42 -12.60 -0.03 0.69 16 15 H 0.12 4.24 8.14 -2.39 -0.02 4.22 16 16 C 0.25 10.23 12.98 89.43 1.16 11.40 16 17 N -0.50 -22.33 18.54 20.02 0.37 -21.96 16 18 C 0.04 1.82 4.42 29.85 0.13 1.95 16 19 C -0.54 -28.73 8.60 25.60 0.22 -28.51 16 20 H 0.05 2.84 7.59 -2.91 -0.02 2.82 16 21 C 0.01 0.67 5.46 84.66 0.46 1.13 16 22 N -0.92 -53.09 13.29 21.45 0.28 -52.81 16 23 Si 0.95 43.59 29.54 68.60 2.03 45.62 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.07 0.98 7.94 -2.39 -0.02 0.96 16 31 H 0.05 0.94 8.09 -2.39 -0.02 0.92 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.58 7.94 -2.39 -0.02 1.56 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.09 1.53 7.58 -2.39 -0.02 1.52 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.34 10.00 6.86 -89.70 -0.61 9.38 16 39 H 0.03 0.87 8.06 -2.38 -0.02 0.85 16 40 H 0.11 2.82 7.54 -2.39 -0.02 2.80 16 41 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 42 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -63.59 355.06 1.84 -61.74 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.37 Total: 15.93 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 4.88 Total: -7.50 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -2.44 Total: -95.93 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -2.99 Total: -19.86 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -63.59 1.84 -61.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776487518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.144 kcal (2) G-P(sol) polarization free energy of solvation -63.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds