Wall clock time and date at job start Tue Mar 31 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47293 * 2 1 4 4 C 1.42899 * 114.00501 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.56873 * 29.84179 * 4 3 2 6 6 C 1.53091 * 109.52167 * 269.69243 * 4 3 2 7 7 O 1.42911 * 109.41176 * 297.69379 * 6 4 3 8 8 C 1.42899 * 114.09822 * 298.84500 * 7 6 4 9 9 C 1.53098 * 109.41467 * 61.16041 * 8 7 6 10 10 C 1.53177 * 109.52604 * 149.99817 * 4 3 2 11 11 H 1.09000 * 109.61265 * 182.83640 * 10 4 3 12 12 N 1.46900 * 109.54306 * 303.06026 * 10 4 3 13 13 C 1.46900 * 110.99761 * 204.55280 * 12 10 4 14 14 C 1.52994 * 109.47023 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47481 * 55.00359 * 14 13 12 16 16 C 1.47197 * 109.47219 * 294.99996 * 14 13 12 17 17 N 5.90270 * 111.53679 * 282.21997 * 2 1 3 18 18 C 1.52998 * 109.47095 * 175.00276 * 14 13 12 19 19 C 1.50706 * 109.47348 * 184.99906 * 18 14 13 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 14 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 14 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 H 1.09008 * 109.46864 * 299.99328 * 1 2 3 28 28 H 1.08997 * 109.47384 * 59.99557 * 1 2 3 29 29 H 1.08996 * 109.47394 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46879 * 239.99993 * 2 1 3 31 31 H 1.08997 * 109.47384 * 120.00443 * 2 1 3 32 32 H 1.09000 * 109.47863 * 177.71731 * 6 4 3 33 33 H 1.08992 * 109.48728 * 57.67797 * 6 4 3 34 34 H 1.08999 * 109.48449 * 301.17579 * 8 7 6 35 35 H 1.09000 * 109.48190 * 181.13689 * 8 7 6 36 36 H 1.09003 * 109.52261 * 182.48579 * 9 8 7 37 37 H 1.08997 * 109.52502 * 62.29286 * 9 8 7 38 38 H 1.00894 * 110.99679 * 80.60391 * 12 10 4 39 39 H 1.09004 * 109.47027 * 60.00361 * 13 12 10 40 40 H 1.09002 * 109.47026 * 300.00576 * 13 12 10 41 41 H 1.09001 * 109.47671 * 65.00115 * 18 14 13 42 42 H 1.09006 * 109.47297 * 304.99834 * 18 14 13 43 43 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8650 0.6010 -0.5120 6 6 3.9408 1.5081 1.4421 7 8 3.4162 2.6671 2.0931 8 6 3.8069 3.9022 1.4898 9 6 3.2915 3.9503 0.0490 10 6 3.8421 2.7470 -0.7224 11 1 4.9294 2.8095 -0.7679 12 7 3.2926 2.7434 -2.0848 13 6 4.0886 3.5981 -2.9758 14 6 3.4866 3.5693 -4.3820 15 1 2.4352 3.8527 -4.3330 16 6 3.6035 2.2114 -4.9381 17 7 3.6969 1.1622 -5.3662 18 6 4.2390 4.5542 -5.2790 19 6 3.5701 4.6169 -6.6281 20 1 2.6960 4.0142 -6.8259 21 6 4.0739 5.4437 -7.6096 22 7 5.1386 6.1774 -7.3689 23 14 3.2451 5.5209 -9.2819 24 1 3.9745 6.4779 -10.1522 25 1 3.2613 4.1730 -9.9051 26 1 1.8403 5.9736 -9.1178 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 5.0299 1.5533 1.4413 33 1 3.6144 0.6139 1.9730 34 1 4.8942 3.9788 1.4897 35 1 3.3839 4.7326 2.0551 36 1 3.6260 4.8722 -0.4269 37 1 2.2021 3.9146 0.0505 38 1 2.3237 3.0246 -2.0845 39 1 5.1141 3.2302 -3.0115 40 1 4.0825 4.6209 -2.5990 41 1 5.2698 4.2213 -5.3999 42 1 4.2279 5.5437 -4.8217 43 1 5.5691 6.1370 -6.5006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776487520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:52 Heat of formation + Delta-G solvation = -85.788001 kcal Electronic energy + Delta-G solvation = -22612.074200 eV Core-core repulsion = 19270.686943 eV Total energy + Delta-G solvation = -3341.387256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.11821 -37.36282 -37.25821 -35.45779 -33.92282 -32.42250 -31.56747 -30.41578 -29.56881 -26.25330 -24.16586 -23.57505 -22.87915 -22.40616 -22.06282 -20.38894 -17.40694 -16.91226 -16.84814 -16.48832 -16.07248 -15.76612 -15.18626 -14.78923 -14.40580 -14.26046 -13.94235 -13.76092 -13.42165 -13.11146 -12.94830 -12.57991 -12.31853 -12.20436 -12.14508 -11.98646 -11.72875 -11.48377 -11.39487 -11.34458 -11.13862 -10.89629 -10.73337 -10.66901 -10.37758 -10.20636 -10.16332 -9.91730 -9.24137 -8.67826 -8.42827 -8.33084 -6.44740 -4.15890 3.42140 3.44320 3.44877 3.62317 3.64495 3.74034 3.78370 4.05300 4.49708 4.54042 4.59951 4.70551 4.79830 4.93415 4.99107 5.04479 5.13291 5.16770 5.25179 5.28941 5.31328 5.33925 5.43484 5.45246 5.55768 5.63567 5.70349 5.74666 5.81888 5.92088 6.00193 6.05000 6.24507 6.32602 6.87744 7.00977 7.07046 7.21810 7.22814 7.44137 8.01803 8.33731 8.51455 8.77791 9.55229 10.96052 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022423 B = 0.003654 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.436843 B = 7661.188141 C = 8390.219319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.363 6.363 4 C 0.068 3.932 5 H 0.074 0.926 6 C 0.040 3.960 7 O -0.373 6.373 8 C 0.065 3.935 9 C -0.183 4.183 10 C 0.093 3.907 11 H 0.088 0.912 12 N -0.681 5.681 13 C 0.064 3.936 14 C 0.017 3.983 15 H 0.100 0.900 16 C 0.255 3.745 17 N -0.476 5.476 18 C 0.018 3.982 19 C -0.606 4.606 20 H 0.051 0.949 21 C 0.021 3.979 22 N -0.909 5.909 23 Si 1.066 2.934 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.286 1.286 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.350 0.650 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.016 0.984 42 H 0.028 0.972 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 -6.433 20.076 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.282 6.282 4 C 0.009 3.991 5 H 0.092 0.908 6 C -0.038 4.038 7 O -0.291 6.291 8 C -0.013 4.013 9 C -0.222 4.222 10 C -0.018 4.018 11 H 0.106 0.894 12 N -0.311 5.311 13 C -0.066 4.066 14 C -0.005 4.005 15 H 0.118 0.882 16 C -0.062 4.062 17 N -0.153 5.153 18 C -0.020 4.020 19 C -0.644 4.644 20 H 0.069 0.931 21 C -0.184 4.184 22 N -0.544 5.544 23 Si 0.894 3.106 24 H -0.207 1.207 25 H -0.214 1.214 26 H -0.213 1.213 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.111 0.889 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.169 0.831 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.659 -7.734 17.891 19.832 hybrid contribution -0.036 0.309 1.657 1.686 sum -3.695 -7.425 19.548 21.235 Atomic orbital electron populations 1.21708 0.93891 1.01959 1.03082 1.22461 0.95540 0.84223 0.99597 1.87930 1.19624 1.25812 1.94822 1.22775 0.82816 0.98831 0.94642 0.90819 1.23119 0.97687 0.89464 0.93496 1.87947 1.74092 1.13537 1.53554 1.22526 0.98540 0.86853 0.93350 1.22887 1.03165 0.99452 0.96709 1.21646 0.99037 0.92749 0.88363 0.89383 1.60509 1.07056 1.56701 1.06879 1.22129 0.97852 0.95413 0.91165 1.19025 1.02907 0.85573 0.92951 0.88198 1.28816 0.92083 0.93850 0.91454 1.81026 1.09858 1.13503 1.10905 1.19279 0.95475 0.92704 0.94554 1.21968 1.15579 1.28802 0.98063 0.93094 1.25788 0.95910 0.92880 1.03776 1.70812 1.19076 1.38862 1.25687 0.83581 0.75478 0.76413 0.75173 1.20676 1.21430 1.21252 0.92045 0.91712 0.91458 0.93301 0.94069 0.92388 0.88860 0.93339 0.88892 0.90711 0.89866 0.83068 0.90674 0.93330 0.96528 0.95423 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.06 0.59 6.47 37.16 0.24 0.83 16 3 O -0.36 -4.33 9.18 -42.72 -0.39 -4.72 16 4 C 0.07 0.74 2.64 -26.59 -0.07 0.67 16 5 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 6 C 0.04 0.38 6.49 37.20 0.24 0.62 16 7 O -0.37 -4.19 10.70 -42.72 -0.46 -4.65 16 8 C 0.06 0.60 6.84 37.21 0.25 0.86 16 9 C -0.18 -1.83 5.24 -26.59 -0.14 -1.97 16 10 C 0.09 1.02 2.34 -67.53 -0.16 0.86 16 11 H 0.09 0.92 7.81 -51.93 -0.41 0.52 16 12 N -0.68 -8.87 5.78 -106.53 -0.62 -9.48 16 13 C 0.06 0.92 4.85 -3.83 -0.02 0.90 16 14 C 0.02 0.32 2.35 -93.41 -0.22 0.10 16 15 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 16 C 0.25 5.37 13.67 -20.73 -0.28 5.09 16 17 N -0.48 -10.90 18.54 42.20 0.78 -10.12 16 18 C 0.02 0.42 3.74 -27.88 -0.10 0.32 16 19 C -0.61 -16.31 8.60 -34.44 -0.30 -16.60 16 20 H 0.05 1.38 7.59 -52.48 -0.40 0.98 16 21 C 0.02 0.58 5.46 -17.82 -0.10 0.49 16 22 N -0.91 -26.67 13.65 55.43 0.76 -25.91 16 23 Si 1.07 24.98 29.90 -169.99 -5.08 19.90 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.04 0.36 7.86 -51.93 -0.41 -0.05 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.79 7.86 -51.93 -0.41 0.39 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.71 7.55 -51.93 -0.39 0.32 16 37 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 38 H 0.35 4.53 8.41 -39.29 -0.33 4.20 16 39 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 40 H 0.05 0.63 7.51 -51.93 -0.39 0.24 16 41 H 0.02 0.40 8.01 -51.93 -0.42 -0.01 16 42 H 0.03 0.63 8.01 -51.93 -0.42 0.21 16 43 H 0.27 7.71 7.22 -40.82 -0.29 7.42 16 LS Contribution 354.55 15.07 5.34 5.34 Total: -1.00 -31.59 354.55 -7.19 -38.78 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -7.26 Total: -0.34 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -0.27 Total: -8.81 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.92 Total: -45.51 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: -0.85 Total: -9.37 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.59 -7.19 -38.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776487520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.008 kcal (2) G-P(sol) polarization free energy of solvation -31.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds