Wall clock time and date at job start Tue Mar 31 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47293 * 2 1 4 4 C 1.42899 * 114.00501 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.56873 * 29.84179 * 4 3 2 6 6 C 1.53091 * 109.52167 * 269.69243 * 4 3 2 7 7 O 1.42911 * 109.41176 * 297.69379 * 6 4 3 8 8 C 1.42899 * 114.09822 * 298.84500 * 7 6 4 9 9 C 1.53098 * 109.41467 * 61.16041 * 8 7 6 10 10 C 1.53177 * 109.52604 * 149.99817 * 4 3 2 11 11 H 1.09000 * 109.61265 * 182.83640 * 10 4 3 12 12 N 1.46900 * 109.54306 * 303.06026 * 10 4 3 13 13 C 1.46900 * 110.99761 * 204.55280 * 12 10 4 14 14 C 1.52994 * 109.47023 * 180.02562 * 13 12 10 15 15 H 1.09003 * 109.47481 * 55.00359 * 14 13 12 16 16 C 1.47197 * 109.47219 * 294.99996 * 14 13 12 17 17 N 5.90270 * 111.53679 * 282.21997 * 2 1 3 18 18 C 1.52998 * 109.47095 * 175.00276 * 14 13 12 19 19 C 1.50706 * 109.47348 * 184.99906 * 18 14 13 20 20 H 1.08005 * 119.99758 * 359.97438 * 19 18 14 21 21 C 1.37871 * 120.00102 * 179.97438 * 19 18 14 22 22 N 1.31516 * 120.00217 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.47389 * 300.00068 * 23 21 19 26 26 H 1.48504 * 109.47102 * 60.00417 * 23 21 19 27 27 H 1.09008 * 109.46864 * 299.99328 * 1 2 3 28 28 H 1.08997 * 109.47384 * 59.99557 * 1 2 3 29 29 H 1.08996 * 109.47394 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46879 * 239.99993 * 2 1 3 31 31 H 1.08997 * 109.47384 * 120.00443 * 2 1 3 32 32 H 1.09000 * 109.47863 * 177.71731 * 6 4 3 33 33 H 1.08992 * 109.48728 * 57.67797 * 6 4 3 34 34 H 1.08999 * 109.48449 * 301.17579 * 8 7 6 35 35 H 1.09000 * 109.48190 * 181.13689 * 8 7 6 36 36 H 1.09003 * 109.52261 * 182.48579 * 9 8 7 37 37 H 1.08997 * 109.52502 * 62.29286 * 9 8 7 38 38 H 1.00894 * 110.99679 * 80.60391 * 12 10 4 39 39 H 1.09004 * 109.47027 * 60.00361 * 13 12 10 40 40 H 1.09002 * 109.47026 * 300.00576 * 13 12 10 41 41 H 1.09001 * 109.47671 * 65.00115 * 18 14 13 42 42 H 1.09006 * 109.47297 * 304.99834 * 18 14 13 43 43 H 0.97001 * 119.99646 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8650 0.6010 -0.5120 6 6 3.9408 1.5081 1.4421 7 8 3.4162 2.6671 2.0931 8 6 3.8069 3.9022 1.4898 9 6 3.2915 3.9503 0.0490 10 6 3.8421 2.7470 -0.7224 11 1 4.9294 2.8095 -0.7679 12 7 3.2926 2.7434 -2.0848 13 6 4.0886 3.5981 -2.9758 14 6 3.4866 3.5693 -4.3820 15 1 2.4352 3.8527 -4.3330 16 6 3.6035 2.2114 -4.9381 17 7 3.6969 1.1622 -5.3662 18 6 4.2390 4.5542 -5.2790 19 6 3.5701 4.6169 -6.6281 20 1 2.6960 4.0142 -6.8259 21 6 4.0739 5.4437 -7.6096 22 7 5.1386 6.1774 -7.3689 23 14 3.2451 5.5209 -9.2819 24 1 3.9745 6.4779 -10.1522 25 1 3.2613 4.1730 -9.9051 26 1 1.8403 5.9736 -9.1178 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 5.0299 1.5533 1.4413 33 1 3.6144 0.6139 1.9730 34 1 4.8942 3.9788 1.4897 35 1 3.3839 4.7326 2.0551 36 1 3.6260 4.8722 -0.4269 37 1 2.2021 3.9146 0.0505 38 1 2.3237 3.0246 -2.0845 39 1 5.1141 3.2302 -3.0115 40 1 4.0825 4.6209 -2.5990 41 1 5.2698 4.2213 -5.3999 42 1 4.2279 5.5437 -4.8217 43 1 5.5691 6.1370 -6.5006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776487520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:51 Heat of formation + Delta-G solvation = -106.653165 kcal Electronic energy + Delta-G solvation = -22612.978981 eV Core-core repulsion = 19270.686943 eV Total energy + Delta-G solvation = -3342.292038 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.93891 -38.78123 -38.06590 -36.76524 -35.77338 -33.90629 -32.39396 -31.53306 -30.48030 -27.85079 -25.40000 -24.39436 -23.99240 -23.64631 -23.47461 -21.22416 -19.14080 -18.45062 -17.66681 -17.51931 -16.96246 -16.60866 -16.09409 -15.86503 -15.73304 -15.49365 -15.30033 -15.06198 -14.92302 -14.18767 -14.01749 -13.90945 -13.60601 -13.47661 -13.31896 -13.21778 -12.95536 -12.87748 -12.57366 -12.44281 -12.26561 -12.15190 -12.08385 -11.95920 -11.79556 -11.61492 -11.48102 -10.96841 -10.68829 -10.52849 -10.04146 -9.33075 -8.63852 -6.34894 1.53870 1.59910 1.79062 1.96748 2.03728 2.56067 2.68031 2.96131 3.11928 3.18233 3.26151 3.75674 3.78948 3.93323 4.10958 4.15052 4.20427 4.26871 4.29915 4.39453 4.44781 4.49764 4.53194 4.56626 4.62139 4.68495 4.75196 4.86302 4.90993 4.92997 5.02218 5.06603 5.19761 5.24585 5.28075 5.38281 5.89786 6.02076 6.17909 6.20854 6.41245 6.44270 6.62733 6.81682 7.42524 8.78438 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022423 B = 0.003654 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.436843 B = 7661.188141 C = 8390.219319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 O -0.380 6.380 4 C 0.067 3.933 5 H 0.069 0.931 6 C 0.042 3.958 7 O -0.392 6.392 8 C 0.063 3.937 9 C -0.175 4.175 10 C 0.091 3.909 11 H 0.096 0.904 12 N -0.688 5.688 13 C 0.078 3.922 14 C 0.027 3.973 15 H 0.114 0.886 16 C 0.264 3.736 17 N -0.511 5.511 18 C 0.022 3.978 19 C -0.616 4.616 20 H 0.044 0.956 21 C -0.029 4.029 22 N -0.935 5.935 23 Si 1.104 2.896 24 H -0.282 1.282 25 H -0.284 1.284 26 H -0.265 1.265 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.350 0.650 39 H 0.073 0.927 40 H 0.068 0.932 41 H -0.002 1.002 42 H 0.033 0.967 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.395 -6.397 21.190 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.299 6.299 4 C 0.008 3.992 5 H 0.087 0.913 6 C -0.036 4.036 7 O -0.311 6.311 8 C -0.015 4.015 9 C -0.214 4.214 10 C -0.019 4.019 11 H 0.114 0.886 12 N -0.319 5.319 13 C -0.052 4.052 14 C 0.005 3.995 15 H 0.132 0.868 16 C -0.052 4.052 17 N -0.188 5.188 18 C -0.017 4.017 19 C -0.654 4.654 20 H 0.063 0.937 21 C -0.228 4.228 22 N -0.573 5.573 23 Si 0.927 3.073 24 H -0.208 1.208 25 H -0.210 1.210 26 H -0.190 1.190 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.170 0.830 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.016 0.984 42 H 0.051 0.949 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.104 -7.705 19.033 20.939 hybrid contribution 0.096 0.263 1.343 1.372 sum -4.008 -7.443 20.376 22.060 Atomic orbital electron populations 1.21706 0.93228 1.02939 1.02440 1.22563 0.96131 0.83661 0.99821 1.87909 1.20302 1.26772 1.94963 1.22825 0.82419 0.98429 0.95519 0.91328 1.23180 0.98600 0.89377 0.92438 1.87923 1.74663 1.14403 1.54122 1.22646 0.99498 0.86568 0.92740 1.22789 1.02152 0.99182 0.97268 1.21726 0.99450 0.93483 0.87205 0.88555 1.60453 1.07000 1.56424 1.08047 1.21928 0.97408 0.96868 0.88983 1.19019 1.03374 0.82881 0.94242 0.86807 1.29355 0.91044 0.94219 0.90617 1.81023 1.11065 1.14763 1.11975 1.19145 0.94548 0.94048 0.93910 1.22378 1.15278 1.27901 0.99856 0.93724 1.27027 0.95961 0.92703 1.07061 1.70915 1.20333 1.40423 1.25590 0.83073 0.75806 0.76562 0.71845 1.20764 1.20970 1.18963 0.92034 0.92911 0.89715 0.94232 0.92627 0.90695 0.88089 0.91866 0.87908 0.89962 0.91328 0.83027 0.90846 0.91380 0.98389 0.94924 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.05 1.06 6.47 71.98 0.47 1.53 16 3 O -0.38 -8.69 9.18 -141.82 -1.30 -9.99 16 4 C 0.07 1.34 2.64 30.68 0.08 1.43 16 5 H 0.07 1.43 7.79 -2.39 -0.02 1.41 16 6 C 0.04 0.70 6.49 72.01 0.47 1.17 16 7 O -0.39 -8.05 10.70 -141.82 -1.52 -9.57 16 8 C 0.06 1.02 6.84 72.01 0.49 1.51 16 9 C -0.17 -3.15 5.24 30.69 0.16 -2.99 16 10 C 0.09 1.84 2.34 45.03 0.11 1.94 16 11 H 0.10 1.79 7.81 -2.39 -0.02 1.77 16 12 N -0.69 -16.88 5.78 -490.96 -2.84 -19.71 16 13 C 0.08 2.10 4.85 86.30 0.42 2.52 16 14 C 0.03 0.95 2.35 -12.60 -0.03 0.92 16 15 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 16 C 0.26 10.96 13.67 89.43 1.22 12.19 16 17 N -0.51 -23.26 18.54 20.02 0.37 -22.89 16 18 C 0.02 1.01 3.74 29.85 0.11 1.12 16 19 C -0.62 -32.90 8.60 25.60 0.22 -32.68 16 20 H 0.04 2.39 7.59 -2.91 -0.02 2.37 16 21 C -0.03 -1.59 5.46 84.65 0.46 -1.13 16 22 N -0.94 -55.01 13.65 21.45 0.29 -54.72 16 23 Si 1.10 49.71 29.90 68.60 2.05 51.76 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 27 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 0.83 8.09 -2.39 -0.02 0.81 16 31 H 0.06 0.90 7.86 -2.39 -0.02 0.88 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.52 7.86 -2.39 -0.02 1.50 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.35 7.55 -2.39 -0.02 1.34 16 37 H 0.07 1.46 7.77 -2.39 -0.02 1.44 16 38 H 0.35 8.58 8.41 -89.70 -0.75 7.83 16 39 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 40 H 0.07 1.59 7.51 -2.39 -0.02 1.58 16 41 H 0.00 -0.11 8.01 -2.39 -0.02 -0.13 16 42 H 0.03 1.45 8.01 -2.38 -0.02 1.43 16 43 H 0.26 15.17 7.22 -92.71 -0.67 14.50 16 Total: -1.00 -66.73 354.55 2.31 -64.42 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.33 Total: 14.94 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: 4.92 Total: -14.24 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -2.17 Total: -97.32 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -2.82 Total: -19.56 kcal Atomic # 14 Polarization: 49.71 SS G_CDS: 2.05 Total: 51.76 kcal Total: -66.73 2.31 -64.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776487520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.233 kcal (2) G-P(sol) polarization free energy of solvation -66.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds