Wall clock time and date at job start Tue Mar 31 2020 06:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.52420 * 30.00030 * 4 3 2 6 6 C 1.53098 * 109.52672 * 269.87598 * 4 3 2 7 7 O 1.42899 * 109.41695 * 182.48428 * 6 4 3 8 8 C 1.42903 * 114.09672 * 61.16196 * 7 6 4 9 9 C 1.53095 * 109.41195 * 298.83472 * 8 7 6 10 10 C 1.53175 * 109.52365 * 150.12538 * 4 3 2 11 11 H 1.09000 * 109.54320 * 57.02410 * 10 4 3 12 12 N 1.46893 * 109.54514 * 296.75344 * 10 4 3 13 13 C 1.46900 * 111.00203 * 155.00101 * 12 10 4 14 14 C 1.53001 * 109.46992 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47535 * 54.99687 * 14 13 12 16 16 C 1.47198 * 109.47120 * 294.99469 * 14 13 12 17 17 N 7.00227 * 117.16079 * 297.07526 * 2 1 3 18 18 C 1.53002 * 109.46943 * 174.99975 * 14 13 12 19 19 C 1.50703 * 109.47211 * 184.99879 * 18 14 13 20 20 H 1.07996 * 119.99661 * 359.97438 * 19 18 14 21 21 C 1.37876 * 120.00157 * 179.97438 * 19 18 14 22 22 N 1.31520 * 119.99686 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00206 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47440 * 89.99873 * 23 21 19 25 25 H 1.48492 * 109.47083 * 210.00079 * 23 21 19 26 26 H 1.48504 * 109.47041 * 330.00104 * 23 21 19 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 31 31 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 32 32 H 1.09001 * 109.47625 * 302.47365 * 6 4 3 33 33 H 1.09001 * 109.47741 * 62.48753 * 6 4 3 34 34 H 1.08991 * 109.48736 * 58.82059 * 8 7 6 35 35 H 1.09003 * 109.48082 * 178.86142 * 8 7 6 36 36 H 1.08999 * 109.52044 * 177.51834 * 9 8 7 37 37 H 1.09000 * 109.52313 * 297.64285 * 9 8 7 38 38 H 1.00900 * 111.00204 * 31.04341 * 12 10 4 39 39 H 1.09005 * 109.46777 * 299.99886 * 13 12 10 40 40 H 1.08997 * 109.47314 * 60.00055 * 13 12 10 41 41 H 1.09003 * 109.46751 * 304.99554 * 18 14 13 42 42 H 1.08997 * 109.47408 * 64.99478 * 18 14 13 43 43 H 0.96996 * 119.99532 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8645 0.6020 -0.5128 6 6 3.9401 1.5039 1.4437 7 8 5.3588 1.6749 1.4418 8 6 5.7996 2.8866 0.8258 9 6 5.3652 2.8984 -0.6422 10 6 3.8426 2.7484 -0.7185 11 1 3.3683 3.6030 -0.2359 12 7 3.4240 2.6814 -2.1250 13 6 3.2459 4.0273 -2.6860 14 6 2.8103 3.9167 -4.1485 15 1 1.9168 3.2960 -4.2156 16 6 3.8923 3.3060 -4.9378 17 7 4.7264 2.8357 -5.5474 18 6 2.5044 5.3121 -4.6965 19 6 1.9588 5.1936 -6.0963 20 1 1.8423 4.2204 -6.5498 21 6 1.6084 6.3276 -6.7979 22 7 1.7498 7.5126 -6.2453 23 14 0.9314 6.1807 -8.5326 24 1 -0.5475 6.0583 -8.4782 25 1 1.2996 7.3900 -9.3117 26 1 1.5039 4.9769 -9.1872 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.4740 2.3379 1.9685 33 1 3.6869 0.5708 1.9469 34 1 5.3580 3.7387 1.3424 35 1 6.8863 2.9495 0.8837 36 1 5.6620 3.8409 -1.1023 37 1 5.8397 2.0705 -1.1691 38 1 2.5831 2.1332 -2.2263 39 1 2.4817 4.5590 -2.1189 40 1 4.1876 4.5731 -2.6273 41 1 1.7665 5.7990 -4.0589 42 1 3.4190 5.9049 -4.7120 43 1 1.5036 8.3104 -6.7390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776487523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:54 Heat of formation + Delta-G solvation = -84.394223 kcal Electronic energy + Delta-G solvation = -22479.100964 eV Core-core repulsion = 19137.774147 eV Total energy + Delta-G solvation = -3341.326818 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.10804 -37.68935 -37.21473 -35.34592 -33.68350 -32.36568 -31.71774 -30.52048 -29.53774 -26.60419 -24.28417 -23.70854 -22.94486 -22.19782 -21.75086 -20.32638 -17.46669 -17.04284 -16.67847 -16.42675 -16.12695 -15.61462 -15.20900 -14.91095 -14.60304 -14.33334 -14.01654 -13.67687 -13.36494 -13.15124 -12.76789 -12.60035 -12.43440 -12.31632 -12.08691 -11.90286 -11.73744 -11.46603 -11.31956 -11.25334 -11.09037 -10.99298 -10.66430 -10.65489 -10.47664 -10.23474 -10.21324 -9.63788 -9.40055 -9.19776 -8.46017 -8.33395 -6.09547 -4.12620 3.20133 3.29202 3.36147 3.40962 3.72875 3.76896 3.84797 4.09669 4.41697 4.44478 4.60819 4.82623 4.83921 4.89733 4.91371 4.99155 5.06091 5.13150 5.27129 5.28747 5.31922 5.41325 5.45848 5.49887 5.60382 5.68291 5.70676 5.74140 5.84920 5.91814 6.05575 6.14060 6.39200 6.50347 6.76080 7.06077 7.08540 7.42638 7.49333 7.53762 7.85789 8.23329 8.59330 8.92108 9.52858 11.01416 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.003743 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.495739 B = 7478.518718 C = 8219.214579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.378 6.378 4 C 0.055 3.945 5 H 0.078 0.922 6 C 0.045 3.955 7 O -0.378 6.378 8 C 0.058 3.942 9 C -0.144 4.144 10 C 0.093 3.907 11 H 0.055 0.945 12 N -0.685 5.685 13 C 0.067 3.933 14 C 0.010 3.990 15 H 0.099 0.901 16 C 0.256 3.744 17 N -0.480 5.480 18 C 0.032 3.968 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.892 5.892 23 Si 0.891 3.109 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.348 0.652 39 H 0.050 0.950 40 H 0.075 0.925 41 H 0.037 0.963 42 H 0.026 0.974 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.686 -11.501 18.216 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.297 6.297 4 C -0.004 4.004 5 H 0.096 0.904 6 C -0.033 4.033 7 O -0.297 6.297 8 C -0.019 4.019 9 C -0.183 4.183 10 C -0.018 4.018 11 H 0.073 0.927 12 N -0.317 5.317 13 C -0.063 4.063 14 C -0.012 4.012 15 H 0.116 0.884 16 C -0.061 4.061 17 N -0.156 5.156 18 C -0.007 4.007 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.139 4.139 22 N -0.531 5.531 23 Si 0.719 3.281 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.198 1.198 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.167 0.833 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.554 -12.069 17.093 21.080 hybrid contribution -1.619 0.489 -0.534 1.773 sum 0.935 -11.579 16.559 20.228 Atomic orbital electron populations 1.21752 0.93522 1.02281 1.03382 1.22559 0.95725 0.83536 1.00211 1.87915 1.20061 1.26807 1.94927 1.22941 0.81675 0.99481 0.96258 0.90437 1.22999 0.81781 1.02522 0.95993 1.87942 1.20950 1.41404 1.79402 1.22699 1.00337 0.86684 0.92208 1.22274 0.94941 1.04277 0.96787 1.21569 0.95426 0.95710 0.89057 0.92671 1.60574 1.40207 1.15662 1.15303 1.22113 1.01221 0.89226 0.93705 1.19210 0.91395 1.00658 0.89977 0.88362 1.28823 0.93488 0.91575 0.92228 1.80939 1.12057 1.11571 1.11071 1.19165 0.97936 0.87208 0.96368 1.21143 1.43058 0.92948 0.99258 0.92513 1.24950 0.95527 0.95296 0.98172 1.69941 1.47938 0.97587 1.37597 0.86591 0.79273 0.77720 0.84512 1.20480 1.21144 1.19841 0.91139 0.91437 0.91931 0.93535 0.92925 0.92264 0.88884 0.92921 0.88374 0.89983 0.90104 0.83284 0.93135 0.90616 0.94451 0.95576 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.06 0.48 6.47 37.16 0.24 0.72 16 3 O -0.38 -4.04 9.29 -35.23 -0.33 -4.37 16 4 C 0.06 0.58 2.31 -26.59 -0.06 0.52 16 5 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 6 C 0.04 0.43 6.46 37.21 0.24 0.67 16 7 O -0.38 -4.12 10.77 -35.23 -0.38 -4.50 16 8 C 0.06 0.55 6.84 37.21 0.25 0.80 16 9 C -0.14 -1.58 5.63 -26.58 -0.15 -1.73 16 10 C 0.09 1.07 2.28 -67.53 -0.15 0.92 16 11 H 0.06 0.66 7.80 -51.93 -0.41 0.25 16 12 N -0.69 -9.22 6.02 -106.53 -0.64 -9.86 16 13 C 0.07 1.01 4.85 -3.82 -0.02 0.99 16 14 C 0.01 0.18 2.35 -93.41 -0.22 -0.04 16 15 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 16 C 0.26 5.38 13.67 -20.79 -0.28 5.10 16 17 N -0.48 -10.97 18.53 42.12 0.78 -10.19 16 18 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 19 C -0.53 -14.06 8.60 -34.44 -0.30 -14.36 16 20 H 0.06 1.51 7.59 -52.49 -0.40 1.12 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 23 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.34 7.94 -51.93 -0.41 -0.08 16 31 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.91 7.58 -51.93 -0.39 0.52 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.35 4.57 7.78 -39.29 -0.31 4.26 16 39 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 40 H 0.08 1.16 7.54 -51.93 -0.39 0.76 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -30.61 356.23 -7.10 -37.71 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.32 Total: -0.70 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.29 Total: -4.94 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.88 Total: -44.91 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.71 Total: -8.87 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.61 -7.10 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776487523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.684 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds