Wall clock time and date at job start Tue Mar 31 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.47264 * 2 1 4 4 C 1.42893 * 114.00274 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.52420 * 30.00030 * 4 3 2 6 6 C 1.53098 * 109.52672 * 269.87598 * 4 3 2 7 7 O 1.42899 * 109.41695 * 182.48428 * 6 4 3 8 8 C 1.42903 * 114.09672 * 61.16196 * 7 6 4 9 9 C 1.53095 * 109.41195 * 298.83472 * 8 7 6 10 10 C 1.53175 * 109.52365 * 150.12538 * 4 3 2 11 11 H 1.09000 * 109.54320 * 57.02410 * 10 4 3 12 12 N 1.46893 * 109.54514 * 296.75344 * 10 4 3 13 13 C 1.46900 * 111.00203 * 155.00101 * 12 10 4 14 14 C 1.53001 * 109.46992 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.47535 * 54.99687 * 14 13 12 16 16 C 1.47198 * 109.47120 * 294.99469 * 14 13 12 17 17 N 7.00227 * 117.16079 * 297.07526 * 2 1 3 18 18 C 1.53002 * 109.46943 * 174.99975 * 14 13 12 19 19 C 1.50703 * 109.47211 * 184.99879 * 18 14 13 20 20 H 1.07996 * 119.99661 * 359.97438 * 19 18 14 21 21 C 1.37876 * 120.00157 * 179.97438 * 19 18 14 22 22 N 1.31520 * 119.99686 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00206 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47440 * 89.99873 * 23 21 19 25 25 H 1.48492 * 109.47083 * 210.00079 * 23 21 19 26 26 H 1.48504 * 109.47041 * 330.00104 * 23 21 19 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00108 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00089 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99712 * 2 1 3 31 31 H 1.08996 * 109.47853 * 240.00055 * 2 1 3 32 32 H 1.09001 * 109.47625 * 302.47365 * 6 4 3 33 33 H 1.09001 * 109.47741 * 62.48753 * 6 4 3 34 34 H 1.08991 * 109.48736 * 58.82059 * 8 7 6 35 35 H 1.09003 * 109.48082 * 178.86142 * 8 7 6 36 36 H 1.08999 * 109.52044 * 177.51834 * 9 8 7 37 37 H 1.09000 * 109.52313 * 297.64285 * 9 8 7 38 38 H 1.00900 * 111.00204 * 31.04341 * 12 10 4 39 39 H 1.09005 * 109.46777 * 299.99886 * 13 12 10 40 40 H 1.08997 * 109.47314 * 60.00055 * 13 12 10 41 41 H 1.09003 * 109.46751 * 304.99554 * 18 14 13 42 42 H 1.08997 * 109.47408 * 64.99478 * 18 14 13 43 43 H 0.96996 * 119.99532 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8645 0.6020 -0.5128 6 6 3.9401 1.5039 1.4437 7 8 5.3588 1.6749 1.4418 8 6 5.7996 2.8866 0.8258 9 6 5.3652 2.8984 -0.6422 10 6 3.8426 2.7484 -0.7185 11 1 3.3683 3.6030 -0.2359 12 7 3.4240 2.6814 -2.1250 13 6 3.2459 4.0273 -2.6860 14 6 2.8103 3.9167 -4.1485 15 1 1.9168 3.2960 -4.2156 16 6 3.8923 3.3060 -4.9378 17 7 4.7264 2.8357 -5.5474 18 6 2.5044 5.3121 -4.6965 19 6 1.9588 5.1936 -6.0963 20 1 1.8423 4.2204 -6.5498 21 6 1.6084 6.3276 -6.7979 22 7 1.7498 7.5126 -6.2453 23 14 0.9314 6.1807 -8.5326 24 1 -0.5475 6.0583 -8.4782 25 1 1.2996 7.3900 -9.3117 26 1 1.5039 4.9769 -9.1872 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.4740 2.3379 1.9685 33 1 3.6869 0.5708 1.9469 34 1 5.3580 3.7387 1.3424 35 1 6.8863 2.9495 0.8837 36 1 5.6620 3.8409 -1.1023 37 1 5.8397 2.0705 -1.1691 38 1 2.5831 2.1332 -2.2263 39 1 2.4817 4.5590 -2.1189 40 1 4.1876 4.5731 -2.6273 41 1 1.7665 5.7990 -4.0589 42 1 3.4190 5.9049 -4.7120 43 1 1.5036 8.3104 -6.7390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776487523.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:53 Heat of formation + Delta-G solvation = -104.656290 kcal Electronic energy + Delta-G solvation = -22479.979593 eV Core-core repulsion = 19137.774147 eV Total energy + Delta-G solvation = -3342.205447 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93981 -38.66977 -38.44166 -36.67752 -35.47912 -33.90987 -32.46671 -31.74938 -30.38341 -28.26121 -25.50135 -24.50810 -23.84056 -23.56861 -23.17136 -21.20343 -18.73470 -18.39270 -18.01634 -17.47031 -17.14107 -16.59118 -16.38354 -16.10215 -15.79002 -15.35054 -15.24269 -14.97970 -14.51365 -14.24002 -14.00854 -13.90468 -13.72709 -13.41530 -13.35090 -13.15408 -13.06955 -12.90814 -12.50671 -12.44952 -12.38214 -12.33048 -12.09821 -11.91083 -11.80209 -11.55319 -11.32805 -11.12942 -10.97191 -10.55297 -10.22427 -9.41204 -8.19906 -6.28247 1.40031 1.42023 1.51320 2.06099 2.13106 2.41301 2.46132 2.95138 3.12223 3.15874 3.33576 3.62302 3.81965 3.99604 4.09636 4.20123 4.21566 4.23377 4.34200 4.35916 4.41262 4.52693 4.58388 4.67252 4.73454 4.75685 4.81752 4.87049 4.89239 4.99608 5.05669 5.09148 5.23479 5.33042 5.45798 5.60701 5.78318 5.97514 6.03373 6.20467 6.31757 6.43945 6.82326 6.92156 7.40465 8.91114 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019141 B = 0.003743 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.495739 B = 7478.518718 C = 8219.214579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.391 6.391 4 C 0.062 3.938 5 H 0.071 0.929 6 C 0.047 3.953 7 O -0.391 6.391 8 C 0.059 3.941 9 C -0.141 4.141 10 C 0.092 3.908 11 H 0.056 0.944 12 N -0.690 5.690 13 C 0.080 3.920 14 C 0.021 3.979 15 H 0.116 0.884 16 C 0.266 3.734 17 N -0.513 5.513 18 C 0.039 3.961 19 C -0.540 4.540 20 H 0.054 0.946 21 C 0.012 3.988 22 N -0.923 5.923 23 Si 0.949 3.051 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.276 1.276 27 H 0.087 0.913 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.350 0.650 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.002 0.998 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.065 -12.354 19.144 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.311 6.311 4 C 0.003 3.997 5 H 0.089 0.911 6 C -0.031 4.031 7 O -0.310 6.310 8 C -0.017 4.017 9 C -0.180 4.180 10 C -0.018 4.018 11 H 0.074 0.926 12 N -0.323 5.323 13 C -0.050 4.050 14 C -0.001 4.001 15 H 0.134 0.866 16 C -0.050 4.050 17 N -0.190 5.190 18 C 0.000 4.000 19 C -0.578 4.578 20 H 0.072 0.928 21 C -0.187 4.187 22 N -0.563 5.563 23 Si 0.775 3.225 24 H -0.191 1.191 25 H -0.210 1.210 26 H -0.201 1.201 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.126 0.874 34 H 0.082 0.918 35 H 0.130 0.870 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.170 0.830 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.927 -12.937 18.032 22.276 hybrid contribution -1.429 0.734 -0.806 1.797 sum 0.498 -12.203 17.226 21.116 Atomic orbital electron populations 1.21761 0.92897 1.03282 1.02771 1.22724 0.96240 0.82688 1.00905 1.87898 1.19943 1.28199 1.95034 1.22836 0.81802 0.98391 0.96683 0.91125 1.23053 0.81202 1.03509 0.95340 1.87930 1.21659 1.42025 1.79425 1.22769 1.01287 0.86716 0.90974 1.22238 0.94428 1.03424 0.97889 1.21635 0.95755 0.96551 0.87898 0.92568 1.60528 1.40392 1.14568 1.16774 1.21906 1.01352 0.90343 0.91416 1.19150 0.91463 0.97941 0.91545 0.86608 1.29276 0.93261 0.90882 0.91594 1.80937 1.13251 1.12689 1.12126 1.18982 0.96387 0.89507 0.95152 1.21545 1.42631 0.92743 1.00855 0.92824 1.25707 0.96050 0.95164 1.01753 1.70034 1.49090 0.98174 1.39040 0.85684 0.79232 0.77375 0.80229 1.19128 1.20967 1.20104 0.89377 0.92560 0.91972 0.92051 0.93020 0.91808 0.87448 0.91750 0.87024 0.90324 0.91589 0.83002 0.91884 0.90933 0.94747 0.98001 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.05 0.77 6.47 71.98 0.47 1.24 16 3 O -0.39 -7.75 9.29 -148.98 -1.38 -9.13 16 4 C 0.06 1.20 2.31 30.69 0.07 1.27 16 5 H 0.07 1.47 7.79 -2.39 -0.02 1.45 16 6 C 0.05 0.80 6.46 72.01 0.47 1.26 16 7 O -0.39 -7.82 10.77 -148.98 -1.60 -9.43 16 8 C 0.06 1.02 6.84 72.01 0.49 1.51 16 9 C -0.14 -2.96 5.63 30.69 0.17 -2.79 16 10 C 0.09 2.01 2.28 45.04 0.10 2.11 16 11 H 0.06 1.24 7.80 -2.39 -0.02 1.22 16 12 N -0.69 -17.78 6.02 -490.94 -2.95 -20.73 16 13 C 0.08 2.31 4.85 86.30 0.42 2.73 16 14 C 0.02 0.76 2.35 -12.60 -0.03 0.73 16 15 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 16 C 0.27 11.09 13.67 89.45 1.22 12.31 16 17 N -0.51 -23.36 18.53 19.99 0.37 -22.99 16 18 C 0.04 1.79 4.42 29.85 0.13 1.92 16 19 C -0.54 -28.75 8.60 25.60 0.22 -28.53 16 20 H 0.05 2.83 7.59 -2.91 -0.02 2.81 16 21 C 0.01 0.67 5.46 84.65 0.46 1.13 16 22 N -0.92 -53.15 13.29 21.45 0.28 -52.86 16 23 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.06 0.75 7.94 -2.39 -0.02 0.73 16 31 H 0.05 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.11 1.52 7.94 -2.39 -0.02 1.50 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.68 7.58 -2.39 -0.02 1.67 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.35 8.72 7.78 -89.69 -0.70 8.02 16 39 H 0.06 1.69 8.06 -2.38 -0.02 1.67 16 40 H 0.07 2.16 7.54 -2.39 -0.02 2.14 16 41 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 43 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -64.17 356.23 1.96 -62.21 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.29 Total: 13.75 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 4.94 Total: -6.38 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -2.30 Total: -96.58 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -2.99 Total: -18.56 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -64.17 1.96 -62.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776487523.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.449 kcal (2) G-P(sol) polarization free energy of solvation -64.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds