Wall clock time and date at job start Tue Mar 31 2020 05:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47303 * 2 1 4 4 C 1.50704 * 109.46705 * 240.00044 * 2 1 3 5 5 O 1.21287 * 119.99673 * 247.26746 * 4 2 1 6 6 N 1.34773 * 120.00241 * 67.26841 * 4 2 1 7 7 C 1.46499 * 119.99967 * 4.72316 * 6 4 2 8 8 C 1.46496 * 120.00024 * 184.72327 * 6 4 2 9 9 C 1.50703 * 109.47172 * 89.99862 * 8 6 4 10 10 H 1.08002 * 120.00089 * 0.02562 * 9 8 6 11 11 C 1.37877 * 120.00018 * 180.02562 * 9 8 6 12 12 N 1.31516 * 120.00109 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00000 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47063 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47228 * 119.99851 * 13 11 9 16 16 H 1.48499 * 109.47283 * 240.00001 * 13 11 9 17 17 N 1.46894 * 109.47082 * 120.00398 * 2 1 3 18 18 C 1.50892 * 111.18441 * 183.42416 * 17 2 1 19 19 C 1.54380 * 103.48057 * 158.11414 * 18 17 2 20 20 H 1.08999 * 117.60125 * 197.14354 * 19 18 17 21 21 C 1.52997 * 118.13139 * 41.62048 * 19 18 17 22 22 C 1.52998 * 60.54453 * 266.77974 * 21 19 18 23 23 C 1.53008 * 119.52288 * 248.25875 * 22 21 19 24 24 O 1.42903 * 109.47166 * 250.69381 * 23 22 21 25 25 C 1.48565 * 110.99841 * 299.99516 * 17 2 1 26 26 H 1.08999 * 109.47594 * 182.44713 * 1 2 3 27 27 H 1.08999 * 109.46719 * 302.44957 * 1 2 3 28 28 H 1.09004 * 109.47055 * 62.44729 * 1 2 3 29 29 H 1.09001 * 109.47181 * 96.42473 * 7 6 4 30 30 H 1.09006 * 109.47089 * 216.42716 * 7 6 4 31 31 H 1.09007 * 109.47102 * 336.42199 * 7 6 4 32 32 H 1.09001 * 109.47389 * 209.99662 * 8 6 4 33 33 H 1.08999 * 109.47285 * 330.00038 * 8 6 4 34 34 H 0.96999 * 119.99911 * 180.02562 * 12 11 9 35 35 H 1.08998 * 110.83420 * 39.75403 * 18 17 2 36 36 H 1.09005 * 111.05589 * 276.57292 * 18 17 2 37 37 H 1.09002 * 117.44286 * 14.42240 * 21 19 18 38 38 H 1.08996 * 117.44700 * 159.17664 * 21 19 18 39 39 H 1.08993 * 109.46752 * 10.69780 * 23 22 21 40 40 H 1.09005 * 109.46690 * 130.69427 * 23 22 21 41 41 H 0.96694 * 113.99497 * 179.97438 * 24 23 22 42 42 H 1.08998 * 110.40755 * 82.18366 * 25 17 2 43 43 H 1.09000 * 110.51252 * 319.79238 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6171 -1.7677 -1.1241 6 7 1.8317 -0.1710 -2.4492 7 6 1.2182 1.1537 -2.5719 8 6 2.2270 -0.9093 -3.6511 9 6 1.0762 -1.7633 -4.1174 10 1 0.1434 -1.7564 -3.5731 11 6 1.2141 -2.5534 -5.2389 12 7 2.3498 -2.5614 -5.9020 13 14 -0.2127 -3.6114 -5.8173 14 1 -1.3701 -3.4226 -4.9062 15 1 -0.5978 -3.2128 -7.1950 16 1 0.1953 -5.0392 -5.8108 17 7 2.0197 -0.6926 1.1993 18 6 3.5256 -0.6428 1.2812 19 6 3.8124 -0.8749 2.7802 20 1 4.8006 -0.6055 3.1529 21 6 2.9933 -1.9377 3.5153 22 6 2.5249 -0.4813 3.5331 23 6 2.5666 0.3082 4.8431 24 8 1.2338 0.5276 5.3097 25 6 1.5434 -0.0189 2.4348 26 1 -0.3634 -1.0267 0.0439 27 1 -0.3633 0.5514 0.8672 28 1 -0.3633 0.4754 -0.9111 29 1 1.9987 1.9071 -2.6779 30 1 0.5713 1.1747 -3.4490 31 1 0.6280 1.3648 -1.6801 32 1 2.4986 -0.2049 -4.4374 33 1 3.0819 -1.5455 -3.4220 34 1 2.4467 -3.1170 -6.6912 35 1 3.8987 0.3327 0.9693 36 1 3.9767 -1.4330 0.6810 37 1 2.4233 -2.6413 2.9084 38 1 3.4084 -2.3426 4.4382 39 1 3.1247 -0.2565 5.5899 40 1 3.0548 1.2679 4.6735 41 1 1.1839 1.0231 6.1385 42 1 0.5284 -0.3364 2.6738 43 1 1.5848 1.0642 2.3195 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782619613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:28 Heat of formation + Delta-G solvation = -27.668373 kcal Electronic energy + Delta-G solvation = -23132.465223 eV Core-core repulsion = 19793.598223 eV Total energy + Delta-G solvation = -3338.867000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34763 -38.80776 -36.68583 -34.82257 -34.64750 -32.57051 -30.39219 -28.87673 -27.57589 -26.32656 -25.90146 -24.84400 -23.37631 -21.42975 -20.26567 -19.18853 -18.24618 -17.50536 -16.56759 -16.49030 -16.20698 -15.17788 -15.04299 -14.68537 -14.45299 -14.28018 -13.72847 -13.55372 -13.25010 -13.09123 -12.80018 -12.47166 -12.35110 -12.10254 -12.00916 -11.56162 -11.38173 -11.28703 -11.19688 -11.11376 -10.87513 -10.75265 -10.55402 -10.52564 -10.11578 -10.00020 -9.56805 -9.52512 -8.78566 -8.40868 -8.22501 -7.56581 -6.01334 -4.05863 3.32172 3.38258 3.39519 3.42615 3.50026 3.71223 4.02653 4.21769 4.47313 4.49547 4.70337 4.78894 4.97106 5.07104 5.13861 5.25699 5.27546 5.33655 5.37641 5.38467 5.58134 5.60593 5.70521 5.80938 5.86011 5.88786 5.93957 5.96743 5.99750 6.20576 6.24686 6.29455 6.44665 6.89479 6.97119 7.19523 7.36983 7.49023 7.60058 7.95940 8.27133 8.47819 8.94719 9.17709 9.59443 11.06721 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028896 B = 0.003845 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.749277 B = 7281.223780 C = 7391.103757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 H 0.056 0.944 4 C 0.512 3.488 5 O -0.524 6.524 6 N -0.603 5.603 7 C 0.071 3.929 8 C 0.246 3.754 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.283 1.283 17 N -0.491 5.491 18 C 0.062 3.938 19 C -0.157 4.157 20 H 0.113 0.887 21 C -0.125 4.125 22 C -0.150 4.150 23 C 0.126 3.874 24 O -0.566 6.566 25 C 0.082 3.918 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.076 0.924 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.047 0.953 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.046 0.954 41 H 0.377 0.623 42 H 0.087 0.913 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 10.335 19.764 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.055 4.055 3 H 0.074 0.926 4 C 0.297 3.703 5 O -0.400 6.400 6 N -0.336 5.336 7 C -0.073 4.073 8 C 0.127 3.873 9 C -0.563 4.563 10 H 0.076 0.924 11 C -0.142 4.142 12 N -0.535 5.535 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 N -0.216 5.216 18 C -0.065 4.065 19 C -0.175 4.175 20 H 0.131 0.869 21 C -0.162 4.162 22 C -0.151 4.151 23 C 0.048 3.952 24 O -0.371 6.371 25 C -0.046 4.046 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.223 0.777 42 H 0.105 0.895 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.139 8.825 19.017 20.965 hybrid contribution -0.280 0.738 0.053 0.792 sum -0.141 9.563 19.070 21.334 Atomic orbital electron populations 1.21948 0.92316 1.03845 1.02330 1.21764 0.97297 0.95677 0.90767 0.92620 1.20019 0.80451 0.85918 0.83926 1.90643 1.41231 1.22206 1.85870 1.48096 1.60296 1.17912 1.07339 1.21898 0.97776 0.84797 1.02780 1.19262 0.96700 0.91386 0.79945 1.21486 0.99175 1.25108 1.10557 0.92387 1.24941 0.96032 0.96733 0.96456 1.69946 1.24423 1.40251 1.18834 0.86446 0.82372 0.80343 0.78287 1.19773 1.21017 1.20871 1.65598 1.07013 1.48978 1.00012 1.23086 0.88181 1.01301 0.93885 1.23454 0.94872 1.05074 0.94146 0.86876 1.22964 1.01080 0.91142 1.01031 1.22301 0.98380 0.98890 0.95486 1.21376 0.83655 0.97351 0.92796 1.86526 1.27330 1.78904 1.44369 1.22343 0.98728 0.95992 0.87550 0.90943 0.92105 0.90583 0.93910 0.90984 0.91419 0.95147 0.93797 0.92818 0.93501 0.87717 0.87476 0.88668 0.93383 0.93587 0.77650 0.89502 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.57 37.16 0.32 -1.81 16 2 C 0.06 0.94 1.44 -68.86 -0.10 0.84 16 3 H 0.06 0.81 7.54 -51.93 -0.39 0.42 16 4 C 0.51 10.98 6.63 -10.99 -0.07 10.90 16 5 O -0.52 -13.43 14.30 5.55 0.08 -13.35 16 6 N -0.60 -13.08 2.86 -182.95 -0.52 -13.60 16 7 C 0.07 1.16 9.84 59.85 0.59 1.75 16 8 C 0.25 6.56 5.23 -5.19 -0.03 6.54 16 9 C -0.52 -15.09 9.39 -34.44 -0.32 -15.42 16 10 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 13 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.49 -7.83 4.47 -221.32 -0.99 -8.82 16 18 C 0.06 0.94 5.72 -0.85 0.00 0.94 16 19 C -0.16 -1.89 7.00 -89.24 -0.62 -2.51 16 20 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 21 C -0.13 -1.51 9.61 -26.73 -0.26 -1.77 16 22 C -0.15 -1.75 2.79 -153.13 -0.43 -2.18 16 23 C 0.13 1.13 7.37 37.16 0.27 1.40 16 24 O -0.57 -5.24 13.36 -35.23 -0.47 -5.71 16 25 C 0.08 1.08 4.75 -2.18 -0.01 1.07 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.06 0.73 7.07 -51.93 -0.37 0.36 16 28 H 0.08 1.05 5.47 -51.93 -0.28 0.77 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 31 H 0.07 0.91 4.07 -51.92 -0.21 0.70 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.32 7.36 -51.93 -0.38 0.94 16 34 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.05 0.67 7.99 -51.93 -0.41 0.25 16 36 H 0.10 1.89 6.87 -51.93 -0.36 1.53 16 37 H 0.11 1.53 8.00 -51.93 -0.42 1.12 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.36 8.04 -51.93 -0.42 -0.06 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.38 1.60 9.12 45.56 0.42 2.02 16 42 H 0.09 1.20 7.72 -51.93 -0.40 0.80 16 43 H 0.04 0.56 7.97 -51.93 -0.41 0.15 16 LS Contribution 343.19 15.07 5.17 5.17 Total: -1.00 -34.70 343.19 -7.92 -42.62 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.14 Total: 1.34 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -0.76 Total: 1.40 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.78 Total: -48.64 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.39 Total: -19.05 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.70 -7.92 -42.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782619613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.953 kcal (2) G-P(sol) polarization free energy of solvation -34.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds