Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47329 * 2 1 4 4 C 1.42901 * 113.99572 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.88884 * 18.65866 * 4 3 2 6 6 C 1.53949 * 113.65901 * 247.18172 * 4 3 2 7 7 C 1.53950 * 87.29908 * 270.26773 * 6 4 3 8 8 H 1.08991 * 113.74862 * 89.75417 * 7 6 4 9 9 N 1.46507 * 113.66283 * 220.79934 * 7 6 4 10 10 C 1.34775 * 119.99844 * 252.18701 * 9 7 6 11 11 O 1.21587 * 119.99651 * 359.97438 * 10 9 7 12 12 N 1.34769 * 120.00179 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00237 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 C 1.52915 * 86.78149 * 335.26513 * 7 6 4 23 23 C 1.52900 * 121.14198 * 259.17981 * 22 7 6 24 24 C 1.53942 * 86.78453 * 209.38183 * 23 22 7 25 25 C 1.52909 * 121.13289 * 150.61248 * 22 7 6 26 26 H 1.09001 * 109.46576 * 300.00093 * 1 2 3 27 27 H 1.08992 * 109.46802 * 60.00055 * 1 2 3 28 28 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47258 * 239.99639 * 2 1 3 30 30 H 1.09001 * 109.47024 * 120.00492 * 2 1 3 31 31 H 1.09007 * 113.57726 * 155.65988 * 6 4 3 32 32 H 1.08997 * 113.58232 * 24.87774 * 6 4 3 33 33 H 0.96996 * 120.00113 * 72.18129 * 9 7 6 34 34 H 0.97010 * 119.99854 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.47175 * 59.99842 * 13 12 10 36 36 H 1.08993 * 109.47452 * 299.99632 * 13 12 10 37 37 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 38 38 H 1.09004 * 113.66206 * 323.85490 * 23 22 7 39 39 H 1.09004 * 113.66232 * 94.90820 * 23 22 7 40 40 H 1.09000 * 113.57994 * 270.13006 * 24 23 22 41 41 H 1.09002 * 113.58351 * 139.33859 * 24 23 22 42 42 H 1.08993 * 113.66401 * 265.09572 * 25 22 7 43 43 H 1.08993 * 113.66379 * 36.15710 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.9285 0.5450 -0.3222 6 6 4.0043 2.0536 1.2990 7 6 3.8586 3.4393 0.6443 8 1 2.8928 3.9110 0.8253 9 7 4.9880 4.3350 0.9061 10 6 4.8395 5.3794 1.7448 11 8 3.7679 5.5786 2.2838 12 7 5.8782 6.2037 1.9853 13 6 5.7166 7.3393 2.8966 14 6 7.0165 8.0959 2.9919 15 1 7.8768 7.7642 2.4296 16 6 7.1070 9.2121 3.7963 17 7 8.2412 9.8726 3.8791 18 14 5.6187 9.7862 4.7683 19 1 4.8331 10.7449 3.9505 20 1 4.7703 8.6166 5.1111 21 1 6.0697 10.4533 6.0160 22 6 3.9468 2.7177 -0.7009 23 6 5.2477 2.6982 -1.5040 24 6 4.3674 2.6039 -2.7634 25 6 3.2495 3.2731 -1.9433 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 5.0388 1.7679 1.4896 32 1 3.3588 1.9107 2.1656 33 1 5.8427 4.1763 0.4758 34 1 6.7330 6.0450 1.5549 35 1 5.4352 6.9751 3.8847 36 1 4.9377 8.0011 2.5179 37 1 8.3048 10.6581 4.4446 38 1 5.8173 3.6251 -1.4368 39 1 5.8569 1.8114 -1.3287 40 1 4.1379 1.5803 -3.0594 41 1 4.7253 3.2145 -3.5924 42 1 2.2623 2.8456 -2.1188 43 1 3.2574 4.3615 -1.9995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787363402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = -35.717545 kcal Electronic energy + Delta-G solvation = -22492.795522 eV Core-core repulsion = 19153.579483 eV Total energy + Delta-G solvation = -3339.216039 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.10896 -38.90394 -37.47980 -35.04939 -34.09842 -32.81708 -32.11271 -30.83307 -27.76601 -26.00715 -24.85759 -24.33658 -23.06254 -22.01084 -21.01512 -20.21723 -18.64492 -18.10887 -17.05440 -16.37445 -16.10064 -16.00246 -15.42033 -15.00535 -14.72980 -14.44911 -13.93171 -13.61951 -13.21047 -13.10850 -13.03720 -12.79593 -12.48485 -12.33242 -12.18609 -12.07846 -11.94293 -11.75138 -11.55416 -11.15078 -10.95197 -10.73692 -10.57667 -10.39358 -10.12134 -9.92282 -9.56401 -9.49282 -9.40388 -8.75272 -8.66555 -7.95469 -6.17546 -4.19039 3.18871 3.30416 3.34927 3.41217 3.47302 3.83446 4.22718 4.37881 4.38498 4.51922 4.54897 4.70594 4.79917 4.86769 4.89588 5.01129 5.05726 5.08649 5.18330 5.27000 5.36037 5.49646 5.52302 5.61940 5.62390 5.69326 5.73174 5.85210 5.91558 5.96020 6.12923 6.22048 6.28892 6.80836 6.89680 7.05697 7.16918 7.30550 7.46848 7.65181 8.32989 8.74299 8.86984 9.28450 9.45073 10.94474 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026710 B = 0.003405 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.030706 B = 8222.231455 C = 8850.437966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.360 6.360 4 C 0.094 3.906 5 H 0.076 0.924 6 C -0.171 4.171 7 C 0.169 3.831 8 H 0.118 0.882 9 N -0.743 5.743 10 C 0.694 3.306 11 O -0.603 6.603 12 N -0.724 5.724 13 C 0.238 3.762 14 C -0.541 4.541 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.260 1.260 21 H -0.284 1.284 22 C -0.115 4.115 23 C -0.113 4.113 24 C -0.139 4.139 25 C -0.119 4.119 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.391 0.609 34 H 0.391 0.609 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.267 0.733 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 -21.496 -12.550 26.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.035 3.965 5 H 0.094 0.906 6 C -0.211 4.211 7 C 0.062 3.938 8 H 0.136 0.864 9 N -0.398 5.398 10 C 0.394 3.606 11 O -0.482 6.482 12 N -0.376 5.376 13 C 0.115 3.885 14 C -0.579 4.579 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.532 5.532 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.184 1.184 21 H -0.210 1.210 22 C -0.117 4.117 23 C -0.151 4.151 24 C -0.176 4.176 25 C -0.157 4.157 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.226 0.774 34 H 0.224 0.776 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.278 -20.925 -11.919 26.183 hybrid contribution 0.380 0.025 0.202 0.432 sum -9.897 -20.899 -11.717 25.924 Atomic orbital electron populations 1.21745 0.93694 1.02142 1.03344 1.22525 0.95619 0.83850 0.99934 1.87915 1.19364 1.26120 1.94459 1.22504 0.81667 0.96231 0.96124 0.90560 1.24007 1.01637 0.97499 0.97911 1.21940 0.91369 0.87617 0.92826 0.86410 1.45112 1.14416 1.29978 1.50285 1.16176 0.84869 0.79631 0.79920 1.90859 1.26598 1.75451 1.55330 1.45400 1.12129 1.30052 1.50024 1.19345 0.97609 0.83124 0.88372 1.21104 0.96295 1.11414 1.29082 0.90338 1.24785 0.96142 0.95765 0.95978 1.69886 1.25165 1.18923 1.39205 0.86808 0.83158 0.79813 0.79875 1.19862 1.18409 1.20972 1.23237 0.98248 0.96105 0.94091 1.22578 0.94764 1.02537 0.95181 1.22827 0.97221 1.00904 0.96673 1.22606 0.98332 1.00568 0.94173 0.91662 0.91830 0.91199 0.93496 0.93341 0.89102 0.90355 0.77439 0.77574 0.95957 0.96406 0.92319 0.89110 0.91149 0.90506 0.91340 0.90752 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.46 6.50 37.16 0.24 0.70 16 3 O -0.36 -3.96 9.84 -35.23 -0.35 -4.31 16 4 C 0.09 0.94 4.17 -26.28 -0.11 0.83 16 5 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 6 C -0.17 -2.00 7.71 -25.75 -0.20 -2.20 16 7 C 0.17 2.32 4.08 -67.47 -0.28 2.05 16 8 H 0.12 1.99 7.46 -51.93 -0.39 1.60 16 9 N -0.74 -11.10 5.25 -58.23 -0.31 -11.40 16 10 C 0.69 14.17 8.57 -86.93 -0.74 13.43 16 11 O -0.60 -14.83 15.94 5.29 0.08 -14.74 16 12 N -0.72 -15.31 5.55 -66.42 -0.37 -15.68 16 13 C 0.24 6.07 4.50 -5.19 -0.02 6.05 16 14 C -0.54 -15.12 9.83 -34.44 -0.34 -15.46 16 15 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.89 -26.87 13.96 55.43 0.77 -26.09 16 18 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 19 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.12 -1.20 0.98 -154.71 -0.15 -1.35 16 23 C -0.11 -0.97 7.15 -26.29 -0.19 -1.15 16 24 C -0.14 -1.14 8.08 -25.75 -0.21 -1.35 16 25 C -0.12 -1.22 7.71 -26.28 -0.20 -1.42 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.39 4.73 7.05 -40.82 -0.29 4.44 16 34 H 0.39 7.23 8.34 -40.82 -0.34 6.89 16 35 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 36 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 37 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.09 0.79 7.03 -51.93 -0.36 0.43 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -33.33 349.85 -8.67 -42.00 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: -7.19 Total: 6.22 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -1.91 Total: 1.52 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.10 Total: -53.18 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.26 Total: -19.05 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.33 -8.67 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.283 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds