Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47329 * 2 1 4 4 C 1.42901 * 113.99572 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.88884 * 18.65866 * 4 3 2 6 6 C 1.53949 * 113.65901 * 247.18172 * 4 3 2 7 7 C 1.53950 * 87.29908 * 270.26773 * 6 4 3 8 8 H 1.08991 * 113.74862 * 89.75417 * 7 6 4 9 9 N 1.46507 * 113.66283 * 220.79934 * 7 6 4 10 10 C 1.34775 * 119.99844 * 252.18701 * 9 7 6 11 11 O 1.21587 * 119.99651 * 359.97438 * 10 9 7 12 12 N 1.34769 * 120.00179 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00237 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.46953 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 C 1.52915 * 86.78149 * 335.26513 * 7 6 4 23 23 C 1.52900 * 121.14198 * 259.17981 * 22 7 6 24 24 C 1.53942 * 86.78453 * 209.38183 * 23 22 7 25 25 C 1.52909 * 121.13289 * 150.61248 * 22 7 6 26 26 H 1.09001 * 109.46576 * 300.00093 * 1 2 3 27 27 H 1.08992 * 109.46802 * 60.00055 * 1 2 3 28 28 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47258 * 239.99639 * 2 1 3 30 30 H 1.09001 * 109.47024 * 120.00492 * 2 1 3 31 31 H 1.09007 * 113.57726 * 155.65988 * 6 4 3 32 32 H 1.08997 * 113.58232 * 24.87774 * 6 4 3 33 33 H 0.96996 * 120.00113 * 72.18129 * 9 7 6 34 34 H 0.97010 * 119.99854 * 359.97438 * 12 10 9 35 35 H 1.09000 * 109.47175 * 59.99842 * 13 12 10 36 36 H 1.08993 * 109.47452 * 299.99632 * 13 12 10 37 37 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 38 38 H 1.09004 * 113.66206 * 323.85490 * 23 22 7 39 39 H 1.09004 * 113.66232 * 94.90820 * 23 22 7 40 40 H 1.09000 * 113.57994 * 270.13006 * 24 23 22 41 41 H 1.09002 * 113.58351 * 139.33859 * 24 23 22 42 42 H 1.08993 * 113.66401 * 265.09572 * 25 22 7 43 43 H 1.08993 * 113.66379 * 36.15710 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4599 -0.0006 5 1 3.9285 0.5450 -0.3222 6 6 4.0043 2.0536 1.2990 7 6 3.8586 3.4393 0.6443 8 1 2.8928 3.9110 0.8253 9 7 4.9880 4.3350 0.9061 10 6 4.8395 5.3794 1.7448 11 8 3.7679 5.5786 2.2838 12 7 5.8782 6.2037 1.9853 13 6 5.7166 7.3393 2.8966 14 6 7.0165 8.0959 2.9919 15 1 7.8768 7.7642 2.4296 16 6 7.1070 9.2121 3.7963 17 7 8.2412 9.8726 3.8791 18 14 5.6187 9.7862 4.7683 19 1 4.8331 10.7449 3.9505 20 1 4.7703 8.6166 5.1111 21 1 6.0697 10.4533 6.0160 22 6 3.9468 2.7177 -0.7009 23 6 5.2477 2.6982 -1.5040 24 6 4.3674 2.6039 -2.7634 25 6 3.2495 3.2731 -1.9433 26 1 -0.3632 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8899 31 1 5.0388 1.7679 1.4896 32 1 3.3588 1.9107 2.1656 33 1 5.8427 4.1763 0.4758 34 1 6.7330 6.0450 1.5549 35 1 5.4352 6.9751 3.8847 36 1 4.9377 8.0011 2.5179 37 1 8.3048 10.6581 4.4446 38 1 5.8173 3.6251 -1.4368 39 1 5.8569 1.8114 -1.3287 40 1 4.1379 1.5803 -3.0594 41 1 4.7253 3.2145 -3.5924 42 1 2.2623 2.8456 -2.1188 43 1 3.2574 4.3615 -1.9995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787363402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = -59.463654 kcal Electronic energy + Delta-G solvation = -22493.825230 eV Core-core repulsion = 19153.579483 eV Total energy + Delta-G solvation = -3340.245747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.06174 -40.46969 -38.23296 -36.34297 -35.80406 -34.51522 -33.68546 -31.59287 -29.74487 -26.76746 -25.80353 -25.39639 -23.87680 -23.66564 -21.95798 -21.83372 -20.04680 -19.29238 -18.35649 -18.04626 -17.09120 -16.78074 -16.53452 -16.38501 -16.19442 -16.00606 -15.35456 -14.93587 -14.48426 -14.46756 -14.22607 -13.93723 -13.77312 -13.52478 -13.22456 -13.05072 -12.90096 -12.74386 -12.70343 -12.43700 -12.29278 -11.93068 -11.89154 -11.65363 -11.38734 -11.27555 -11.17489 -10.97411 -10.91592 -10.33173 -10.18359 -9.60307 -8.39837 -6.46250 1.33111 1.34973 1.48769 1.87777 2.19687 2.28952 2.51575 2.95765 3.36880 3.47502 3.55643 3.75820 3.78557 3.91554 3.98204 4.21678 4.22333 4.39511 4.48425 4.52940 4.55588 4.72994 4.76892 4.83516 4.86900 4.92914 4.99209 5.04133 5.05143 5.05698 5.11694 5.20759 5.25325 5.28636 5.38574 5.53998 5.55222 5.65196 6.00075 6.30000 6.35437 6.55684 7.14829 7.28314 7.68357 8.74851 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026710 B = 0.003405 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.030706 B = 8222.231455 C = 8850.437966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.386 6.386 4 C 0.104 3.896 5 H 0.108 0.892 6 C -0.167 4.167 7 C 0.150 3.850 8 H 0.078 0.922 9 N -0.718 5.718 10 C 0.693 3.307 11 O -0.648 6.648 12 N -0.721 5.721 13 C 0.252 3.748 14 C -0.544 4.544 15 H 0.061 0.939 16 C 0.028 3.972 17 N -0.930 5.930 18 Si 0.936 3.064 19 H -0.265 1.265 20 H -0.263 1.263 21 H -0.271 1.271 22 C -0.108 4.108 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.128 4.128 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.409 0.591 34 H 0.405 0.595 35 H 0.009 0.991 36 H 0.007 0.993 37 H 0.273 0.727 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 -23.594 -13.694 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.025 4.025 3 O -0.305 6.305 4 C 0.045 3.955 5 H 0.126 0.874 6 C -0.207 4.207 7 C 0.044 3.956 8 H 0.097 0.903 9 N -0.373 5.373 10 C 0.393 3.607 11 O -0.530 6.530 12 N -0.375 5.375 13 C 0.127 3.873 14 C -0.582 4.582 15 H 0.079 0.921 16 C -0.173 4.173 17 N -0.569 5.569 18 Si 0.760 3.240 19 H -0.190 1.190 20 H -0.187 1.187 21 H -0.196 1.196 22 C -0.109 4.109 23 C -0.145 4.145 24 C -0.163 4.163 25 C -0.166 4.166 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.127 0.873 32 H 0.079 0.921 33 H 0.247 0.753 34 H 0.240 0.760 35 H 0.026 0.974 36 H 0.025 0.975 37 H 0.082 0.918 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.137 -23.074 -13.114 28.411 hybrid contribution 0.327 0.627 0.511 0.872 sum -9.810 -22.448 -12.603 27.550 Atomic orbital electron populations 1.21775 0.93423 1.03308 1.02390 1.22740 0.95960 0.82701 1.01144 1.87906 1.20001 1.28168 1.94462 1.22469 0.81563 0.97053 0.94387 0.87399 1.24013 1.02542 0.95897 0.98212 1.22111 0.89125 0.87925 0.96458 0.90339 1.44908 1.15736 1.28242 1.48462 1.16313 0.83796 0.80352 0.80252 1.90828 1.28261 1.76719 1.57226 1.45103 1.13171 1.29421 1.49792 1.18935 0.95857 0.83959 0.88530 1.21263 0.96631 1.11670 1.28637 0.92110 1.25556 0.98702 0.95987 0.97008 1.69976 1.26994 1.19669 1.40269 0.85875 0.79818 0.79301 0.79001 1.19019 1.18731 1.19614 1.23281 0.99994 0.95416 0.92257 1.22622 0.94005 1.03554 0.94366 1.22792 0.95493 1.01588 0.96457 1.22626 0.99059 0.99768 0.95123 0.93100 0.92299 0.88972 0.91558 0.92690 0.87306 0.92106 0.75337 0.75963 0.97357 0.97526 0.91811 0.89338 0.88781 0.88873 0.90692 0.91289 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.71 6.50 71.98 0.47 1.18 16 3 O -0.39 -8.07 9.84 -148.98 -1.47 -9.53 16 4 C 0.10 1.84 4.17 30.89 0.13 1.97 16 5 H 0.11 1.29 7.87 -2.39 -0.02 1.27 16 6 C -0.17 -3.70 7.71 31.23 0.24 -3.46 16 7 C 0.15 4.09 4.08 45.28 0.18 4.27 16 8 H 0.08 2.80 7.46 -2.39 -0.02 2.78 16 9 N -0.72 -21.04 5.25 -456.41 -2.40 -23.43 16 10 C 0.69 28.50 8.57 179.06 1.53 30.03 16 11 O -0.65 -32.69 15.94 -3.99 -0.06 -32.76 16 12 N -0.72 -30.55 5.55 -482.31 -2.68 -33.23 16 13 C 0.25 12.92 4.50 85.63 0.39 13.31 16 14 C -0.54 -30.67 9.83 25.60 0.25 -30.42 16 15 H 0.06 3.57 7.84 -2.91 -0.02 3.54 16 16 C 0.03 1.60 5.47 84.66 0.46 2.06 16 17 N -0.93 -56.09 13.96 21.45 0.30 -55.79 16 18 Si 0.94 45.17 27.47 68.60 1.88 47.06 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.26 -12.74 6.54 99.48 0.65 -12.09 16 21 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 22 C -0.11 -2.07 0.98 -52.31 -0.05 -2.12 16 23 C -0.11 -1.49 7.15 30.88 0.22 -1.27 16 24 C -0.13 -1.68 8.08 31.23 0.25 -1.43 16 25 C -0.13 -2.48 7.71 30.89 0.24 -2.25 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.41 9.16 7.05 -92.71 -0.65 8.50 16 34 H 0.41 14.76 8.34 -92.70 -0.77 13.99 16 35 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 36 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 37 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 38 H 0.09 1.28 7.03 -2.39 -0.02 1.27 16 39 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 1.40 7.83 -2.39 -0.02 1.38 16 43 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -73.20 349.85 0.16 -73.05 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: -0.48 Total: 24.00 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.06 Total: 10.64 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -4.78 Total: -112.45 kcal Atomic # 8 Polarization: -40.76 SS G_CDS: -1.53 Total: -42.29 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -73.20 0.16 -73.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.583 kcal (2) G-P(sol) polarization free energy of solvation -73.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds