Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.47345 * 2 1 4 4 C 1.42897 * 113.99997 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.88749 * 341.34475 * 4 3 2 6 6 C 1.53948 * 113.66369 * 112.81197 * 4 3 2 7 7 C 1.53957 * 87.29686 * 139.20272 * 6 4 3 8 8 H 1.09002 * 113.65722 * 89.73762 * 7 6 4 9 9 N 1.46498 * 113.66407 * 220.79629 * 7 6 4 10 10 C 1.34768 * 120.00031 * 252.18664 * 9 7 6 11 11 O 1.21591 * 120.00200 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00429 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00581 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47292 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99823 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00070 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00268 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99774 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47047 * 90.00212 * 18 16 14 20 20 H 1.48497 * 109.46743 * 210.00025 * 18 16 14 21 21 H 1.48501 * 109.46966 * 329.99573 * 18 16 14 22 22 C 1.52909 * 113.65959 * 210.00103 * 4 3 2 23 23 C 1.52910 * 121.13680 * 346.34507 * 22 4 3 24 24 C 1.53949 * 86.78077 * 100.82535 * 23 22 4 25 25 C 1.52905 * 121.13655 * 94.91234 * 22 4 3 26 26 H 1.08995 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46960 * 299.99619 * 1 2 3 28 28 H 1.08997 * 109.47240 * 59.99635 * 1 2 3 29 29 H 1.09002 * 109.47148 * 239.99889 * 2 1 3 30 30 H 1.09002 * 109.47493 * 119.99945 * 2 1 3 31 31 H 1.09001 * 113.57503 * 24.59951 * 6 4 3 32 32 H 1.08996 * 113.57974 * 253.80876 * 6 4 3 33 33 H 0.96998 * 119.99697 * 72.18259 * 9 7 6 34 34 H 0.97006 * 119.99571 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.46958 * 299.99659 * 13 12 10 36 36 H 1.08997 * 109.47315 * 59.99329 * 13 12 10 37 37 H 0.96997 * 119.99978 * 179.97438 * 17 16 14 38 38 H 1.09006 * 113.66074 * 215.29190 * 23 22 4 39 39 H 1.08994 * 113.66448 * 346.35155 * 23 22 4 40 40 H 1.09009 * 113.57633 * 270.12923 * 24 23 22 41 41 H 1.09000 * 113.65567 * 139.34741 * 24 23 22 42 42 H 1.08990 * 113.66878 * 13.64950 * 25 22 4 43 43 H 1.09000 * 113.66430 * 144.61574 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9287 0.5450 0.3203 6 6 4.0032 2.0540 -1.3005 7 6 4.9807 2.8528 -0.4192 8 1 5.9152 2.3292 -0.2171 9 7 5.1842 4.2323 -0.8681 10 6 6.3505 4.5893 -1.4414 11 8 7.2336 3.7663 -1.5866 12 7 6.5380 5.8586 -1.8539 13 6 7.8054 6.2465 -2.4777 14 6 7.7587 7.7076 -2.8439 15 1 6.8732 8.2890 -2.6334 16 6 8.8464 8.3022 -3.4476 17 7 8.8055 9.5772 -3.7676 18 14 10.3783 7.2967 -3.8109 19 1 10.2676 6.6979 -5.1653 20 1 11.5729 8.1770 -3.7550 21 1 10.5121 6.2160 -2.8012 22 6 3.9472 2.7175 0.6997 23 6 3.0058 3.8704 1.0500 24 6 3.0035 3.3174 2.4867 25 6 4.3715 2.6869 2.1684 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.2944 2.6796 -1.8430 32 1 4.4927 1.3177 -1.9378 33 1 4.4795 4.8888 -0.7527 34 1 5.8333 6.5152 -1.7385 35 1 8.6228 6.0738 -1.7775 36 1 7.9653 5.6512 -3.3766 37 1 9.5708 9.9955 -4.1920 38 1 3.4668 4.8542 0.9607 39 1 2.0362 3.8090 0.5560 40 1 2.2178 2.5845 2.6705 41 1 3.0477 4.0911 3.2532 42 1 4.4928 1.6801 2.5678 43 1 5.2172 3.3367 2.3931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787363403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = -37.918669 kcal Electronic energy + Delta-G solvation = -22459.409156 eV Core-core repulsion = 19120.097670 eV Total energy + Delta-G solvation = -3339.311487 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.09271 -38.93756 -37.40039 -35.11835 -34.12661 -32.84289 -32.12407 -30.97600 -27.77687 -25.96039 -24.82472 -24.28257 -23.00331 -21.99339 -21.06005 -20.24345 -18.61085 -18.06809 -17.22698 -16.41494 -16.06814 -15.91124 -15.47424 -15.06327 -14.74121 -14.48383 -13.93682 -13.64446 -13.20015 -13.10649 -13.06233 -12.79545 -12.46966 -12.34362 -12.27206 -12.11791 -11.83896 -11.60897 -11.44038 -11.22865 -10.96827 -10.74795 -10.60327 -10.37642 -10.30593 -9.93749 -9.55562 -9.48948 -9.42092 -8.77323 -8.68966 -7.97725 -6.18180 -4.19837 3.12720 3.30015 3.36626 3.45718 3.60955 3.79006 4.19269 4.35248 4.36930 4.43159 4.61180 4.70005 4.77171 4.83033 4.89831 5.00742 5.06304 5.08287 5.17504 5.31151 5.36820 5.48896 5.52897 5.59813 5.65671 5.72865 5.78373 5.79759 5.87969 5.93894 6.10832 6.22683 6.31890 6.78349 6.86045 7.05403 7.15133 7.28532 7.44761 7.62879 8.31756 8.72770 8.85200 9.25059 9.43781 10.93838 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031749 B = 0.003191 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.694233 B = 8773.479667 C = 8976.491673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.367 6.367 4 C 0.091 3.909 5 H 0.090 0.910 6 C -0.167 4.167 7 C 0.162 3.838 8 H 0.116 0.884 9 N -0.738 5.738 10 C 0.695 3.305 11 O -0.605 6.605 12 N -0.723 5.723 13 C 0.238 3.762 14 C -0.541 4.541 15 H 0.079 0.921 16 C 0.077 3.923 17 N -0.894 5.894 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.260 1.260 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.134 4.134 25 C -0.126 4.126 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.046 0.954 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.394 0.606 34 H 0.392 0.608 35 H 0.023 0.977 36 H 0.018 0.982 37 H 0.267 0.733 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 -17.745 11.141 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.286 6.286 4 C 0.032 3.968 5 H 0.108 0.892 6 C -0.206 4.206 7 C 0.055 3.945 8 H 0.134 0.866 9 N -0.394 5.394 10 C 0.395 3.605 11 O -0.485 6.485 12 N -0.375 5.375 13 C 0.116 3.884 14 C -0.579 4.579 15 H 0.097 0.903 16 C -0.127 4.127 17 N -0.531 5.531 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.184 1.184 22 C -0.113 4.113 23 C -0.147 4.147 24 C -0.171 4.171 25 C -0.163 4.163 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.228 0.772 34 H 0.225 0.775 35 H 0.041 0.959 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.231 -18.146 10.894 26.076 hybrid contribution 0.337 -0.009 -0.239 0.413 sum -14.895 -18.155 10.655 25.787 Atomic orbital electron populations 1.21737 0.93877 1.02104 1.03115 1.22502 0.95509 0.84206 0.99930 1.87940 1.20256 1.25873 1.94531 1.23109 0.81136 0.96376 0.96143 0.89180 1.23992 0.99085 1.00317 0.97234 1.21666 0.97212 0.82662 0.92967 0.86596 1.44978 1.16785 1.11322 1.66287 1.16154 0.82252 0.83494 0.78594 1.90850 1.43327 1.51146 1.63138 1.45399 1.20156 1.08159 1.63785 1.19348 0.80823 0.95709 0.92546 1.21101 1.03164 0.92506 1.41166 0.90314 1.24787 0.98488 0.94869 0.94520 1.69883 1.31327 1.10697 1.41224 0.86808 0.82503 0.80542 0.79784 1.19873 1.20969 1.18430 1.23286 0.96809 0.96766 0.94443 1.22408 0.99329 0.96477 0.96450 1.22760 0.97389 1.00208 0.96744 1.22770 0.97834 1.01285 0.94453 0.91293 0.91932 0.91828 0.93409 0.93547 0.88899 0.90793 0.77168 0.77497 0.95941 0.96400 0.92304 0.89840 0.90356 0.90227 0.91635 0.91564 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.42 6.50 37.16 0.24 0.66 16 3 O -0.37 -3.68 9.54 -35.23 -0.34 -4.02 16 4 C 0.09 0.90 4.19 -26.28 -0.11 0.79 16 5 H 0.09 0.77 7.87 -51.93 -0.41 0.37 16 6 C -0.17 -1.93 7.72 -25.75 -0.20 -2.13 16 7 C 0.16 2.10 4.12 -67.48 -0.28 1.82 16 8 H 0.12 1.69 7.46 -51.93 -0.39 1.31 16 9 N -0.74 -10.91 5.25 -58.23 -0.31 -11.21 16 10 C 0.70 13.92 8.57 -86.93 -0.74 13.18 16 11 O -0.60 -14.44 15.94 5.29 0.08 -14.35 16 12 N -0.72 -15.17 5.55 -66.42 -0.37 -15.54 16 13 C 0.24 6.02 4.50 -5.20 -0.02 6.00 16 14 C -0.54 -15.07 9.83 -34.44 -0.34 -15.41 16 15 H 0.08 2.28 7.84 -52.49 -0.41 1.86 16 16 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 17 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 18 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 22 C -0.11 -1.15 1.07 -154.71 -0.17 -1.32 16 23 C -0.11 -1.06 6.86 -26.28 -0.18 -1.24 16 24 C -0.13 -1.19 8.08 -25.75 -0.21 -1.40 16 25 C -0.13 -1.20 7.84 -26.28 -0.21 -1.41 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.39 4.90 7.05 -40.82 -0.29 4.61 16 34 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 35 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 36 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 37 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 38 H 0.08 0.81 7.03 -51.93 -0.36 0.44 16 39 H 0.08 0.80 7.65 -51.93 -0.40 0.40 16 40 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -32.67 349.37 -8.67 -41.34 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.18 Total: 6.42 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.93 Total: 1.05 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: 0.10 Total: -52.77 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.25 Total: -18.37 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.67 -8.67 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.421 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds