Wall clock time and date at job start Tue Mar 31 2020 06:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.47345 * 2 1 4 4 C 1.42897 * 113.99997 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.88749 * 341.34475 * 4 3 2 6 6 C 1.53948 * 113.66369 * 112.81197 * 4 3 2 7 7 C 1.53957 * 87.29686 * 139.20272 * 6 4 3 8 8 H 1.09002 * 113.65722 * 89.73762 * 7 6 4 9 9 N 1.46498 * 113.66407 * 220.79629 * 7 6 4 10 10 C 1.34768 * 120.00031 * 252.18664 * 9 7 6 11 11 O 1.21591 * 120.00200 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00429 * 180.02562 * 10 9 7 13 13 C 1.46494 * 120.00581 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47292 * 180.02562 * 13 12 10 15 15 H 1.07996 * 119.99823 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00070 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00268 * 179.97438 * 16 14 13 18 18 Si 1.86808 * 119.99774 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47047 * 90.00212 * 18 16 14 20 20 H 1.48497 * 109.46743 * 210.00025 * 18 16 14 21 21 H 1.48501 * 109.46966 * 329.99573 * 18 16 14 22 22 C 1.52909 * 113.65959 * 210.00103 * 4 3 2 23 23 C 1.52910 * 121.13680 * 346.34507 * 22 4 3 24 24 C 1.53949 * 86.78077 * 100.82535 * 23 22 4 25 25 C 1.52905 * 121.13655 * 94.91234 * 22 4 3 26 26 H 1.08995 * 109.47045 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.46960 * 299.99619 * 1 2 3 28 28 H 1.08997 * 109.47240 * 59.99635 * 1 2 3 29 29 H 1.09002 * 109.47148 * 239.99889 * 2 1 3 30 30 H 1.09002 * 109.47493 * 119.99945 * 2 1 3 31 31 H 1.09001 * 113.57503 * 24.59951 * 6 4 3 32 32 H 1.08996 * 113.57974 * 253.80876 * 6 4 3 33 33 H 0.96998 * 119.99697 * 72.18259 * 9 7 6 34 34 H 0.97006 * 119.99571 * 359.97438 * 12 10 9 35 35 H 1.09002 * 109.46958 * 299.99659 * 13 12 10 36 36 H 1.08997 * 109.47315 * 59.99329 * 13 12 10 37 37 H 0.96997 * 119.99978 * 179.97438 * 17 16 14 38 38 H 1.09006 * 113.66074 * 215.29190 * 23 22 4 39 39 H 1.08994 * 113.66448 * 346.35155 * 23 22 4 40 40 H 1.09009 * 113.57633 * 270.12923 * 24 23 22 41 41 H 1.09000 * 113.65567 * 139.34741 * 24 23 22 42 42 H 1.08990 * 113.66878 * 13.64950 * 25 22 4 43 43 H 1.09000 * 113.66430 * 144.61574 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9287 0.5450 0.3203 6 6 4.0032 2.0540 -1.3005 7 6 4.9807 2.8528 -0.4192 8 1 5.9152 2.3292 -0.2171 9 7 5.1842 4.2323 -0.8681 10 6 6.3505 4.5893 -1.4414 11 8 7.2336 3.7663 -1.5866 12 7 6.5380 5.8586 -1.8539 13 6 7.8054 6.2465 -2.4777 14 6 7.7587 7.7076 -2.8439 15 1 6.8732 8.2890 -2.6334 16 6 8.8464 8.3022 -3.4476 17 7 8.8055 9.5772 -3.7676 18 14 10.3783 7.2967 -3.8109 19 1 10.2676 6.6979 -5.1653 20 1 11.5729 8.1770 -3.7550 21 1 10.5121 6.2160 -2.8012 22 6 3.9472 2.7175 0.6997 23 6 3.0058 3.8704 1.0500 24 6 3.0035 3.3174 2.4867 25 6 4.3715 2.6869 2.1684 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.2944 2.6796 -1.8430 32 1 4.4927 1.3177 -1.9378 33 1 4.4795 4.8888 -0.7527 34 1 5.8333 6.5152 -1.7385 35 1 8.6228 6.0738 -1.7775 36 1 7.9653 5.6512 -3.3766 37 1 9.5708 9.9955 -4.1920 38 1 3.4668 4.8542 0.9607 39 1 2.0362 3.8090 0.5560 40 1 2.2178 2.5845 2.6705 41 1 3.0477 4.0911 3.2532 42 1 4.4928 1.6801 2.5678 43 1 5.2172 3.3367 2.3931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787363403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:20 Heat of formation + Delta-G solvation = -60.553324 kcal Electronic energy + Delta-G solvation = -22460.390669 eV Core-core repulsion = 19120.097670 eV Total energy + Delta-G solvation = -3340.292999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.04708 -40.46294 -38.13475 -36.36370 -35.82662 -34.51686 -33.70245 -31.67312 -29.74205 -26.74142 -25.76959 -25.34663 -23.90057 -23.50981 -21.98747 -21.84331 -20.03737 -19.25970 -18.31790 -18.10315 -17.12663 -16.77197 -16.55127 -16.35510 -16.25392 -15.95605 -15.33772 -14.90467 -14.52238 -14.46883 -14.26279 -13.89073 -13.79668 -13.38927 -13.24420 -13.03517 -12.97895 -12.71461 -12.57080 -12.30389 -12.28013 -11.95837 -11.91822 -11.65061 -11.40827 -11.29119 -11.21958 -11.07605 -10.91028 -10.26155 -10.18492 -9.60853 -8.39096 -6.45895 1.34262 1.35867 1.49556 1.82888 2.19366 2.29635 2.75521 2.96454 3.33264 3.44443 3.56570 3.62590 3.80343 3.88593 3.97091 4.22496 4.24659 4.39580 4.46398 4.55035 4.56963 4.69143 4.74888 4.84302 4.88765 4.91909 4.99168 5.04388 5.06237 5.08237 5.12014 5.20283 5.25711 5.31794 5.41309 5.55075 5.55608 5.63851 5.99413 6.28767 6.35979 6.56215 7.14701 7.26438 7.67244 8.75680 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031749 B = 0.003191 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.694233 B = 8773.479667 C = 8976.491673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.048 3.952 3 O -0.379 6.379 4 C 0.102 3.898 5 H 0.107 0.893 6 C -0.166 4.166 7 C 0.148 3.852 8 H 0.099 0.901 9 N -0.717 5.717 10 C 0.696 3.304 11 O -0.643 6.643 12 N -0.723 5.723 13 C 0.252 3.748 14 C -0.545 4.545 15 H 0.058 0.942 16 C 0.026 3.974 17 N -0.932 5.932 18 Si 0.938 3.062 19 H -0.265 1.265 20 H -0.272 1.272 21 H -0.260 1.260 22 C -0.105 4.105 23 C -0.111 4.111 24 C -0.125 4.125 25 C -0.126 4.126 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.407 0.593 34 H 0.404 0.596 35 H 0.011 0.989 36 H 0.009 0.991 37 H 0.272 0.728 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.890 -19.359 12.034 28.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.298 6.298 4 C 0.044 3.956 5 H 0.124 0.876 6 C -0.205 4.205 7 C 0.042 3.958 8 H 0.117 0.883 9 N -0.373 5.373 10 C 0.396 3.604 11 O -0.526 6.526 12 N -0.376 5.376 13 C 0.128 3.872 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.174 4.174 17 N -0.570 5.570 18 Si 0.762 3.238 19 H -0.190 1.190 20 H -0.197 1.197 21 H -0.185 1.185 22 C -0.107 4.107 23 C -0.148 4.148 24 C -0.162 4.162 25 C -0.163 4.163 26 H 0.105 0.895 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.244 0.756 34 H 0.239 0.761 35 H 0.028 0.972 36 H 0.027 0.973 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.097 0.903 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.109 -19.765 11.814 28.102 hybrid contribution 0.472 0.482 -0.492 0.835 sum -15.637 -19.283 11.322 27.286 Atomic orbital electron populations 1.21747 0.93083 1.03174 1.02609 1.22709 0.96198 0.83205 1.00743 1.87926 1.19938 1.27498 1.94478 1.22988 0.81520 0.96662 0.94457 0.87551 1.23954 0.98546 1.00061 0.97931 1.21874 0.97464 0.81327 0.95164 0.88275 1.44823 1.15269 1.12595 1.64583 1.16242 0.83121 0.82564 0.78518 1.90820 1.45064 1.52019 1.64701 1.45128 1.19324 1.09129 1.64026 1.18939 0.82379 0.93878 0.92033 1.21274 1.02551 0.93625 1.40875 0.92336 1.25590 1.01589 0.95830 0.94386 1.69981 1.32596 1.12228 1.42232 0.85842 0.79091 0.79102 0.79762 1.18991 1.19742 1.18461 1.23264 0.95884 0.97391 0.94112 1.22436 0.98947 0.96216 0.97236 1.22714 0.96966 1.00330 0.96181 1.22769 0.97933 1.01960 0.93628 0.89476 0.92108 0.92634 0.93061 0.92248 0.89418 0.90976 0.75582 0.76099 0.97157 0.97342 0.91831 0.89921 0.90591 0.89628 0.90921 0.90310 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.05 0.62 6.50 71.98 0.47 1.09 16 3 O -0.38 -6.81 9.54 -148.98 -1.42 -8.23 16 4 C 0.10 1.82 4.19 30.88 0.13 1.95 16 5 H 0.11 1.56 7.87 -2.39 -0.02 1.54 16 6 C -0.17 -3.65 7.72 31.23 0.24 -3.41 16 7 C 0.15 3.71 4.12 45.29 0.19 3.90 16 8 H 0.10 2.88 7.46 -2.39 -0.02 2.86 16 9 N -0.72 -20.72 5.25 -456.41 -2.40 -23.12 16 10 C 0.70 27.72 8.57 179.06 1.53 29.25 16 11 O -0.64 -30.81 15.94 -4.00 -0.06 -30.88 16 12 N -0.72 -30.28 5.55 -482.32 -2.68 -32.96 16 13 C 0.25 12.76 4.50 85.63 0.38 13.14 16 14 C -0.55 -30.65 9.83 25.60 0.25 -30.40 16 15 H 0.06 3.45 7.84 -2.91 -0.02 3.42 16 16 C 0.03 1.50 5.47 84.65 0.46 1.97 16 17 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 18 Si 0.94 44.71 27.47 68.60 1.88 46.59 16 19 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.26 -12.35 6.54 99.48 0.65 -11.70 16 22 C -0.11 -2.00 1.07 -52.31 -0.06 -2.06 16 23 C -0.11 -1.96 6.86 30.88 0.21 -1.75 16 24 C -0.12 -1.92 8.08 31.23 0.25 -1.67 16 25 C -0.13 -2.15 7.84 30.88 0.24 -1.90 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.41 9.69 7.05 -92.71 -0.65 9.03 16 34 H 0.40 14.83 8.34 -92.70 -0.77 14.06 16 35 H 0.01 0.56 7.20 -2.39 -0.02 0.54 16 36 H 0.01 0.45 7.57 -2.39 -0.02 0.44 16 37 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 38 H 0.08 1.47 7.03 -2.38 -0.02 1.45 16 39 H 0.08 1.41 7.65 -2.39 -0.02 1.39 16 40 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.44 349.37 0.20 -69.24 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.48 Total: 26.00 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.05 Total: 9.23 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -4.78 Total: -111.95 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.49 Total: -39.11 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 1.88 Total: 46.59 kcal Total: -69.44 0.20 -69.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.686 kcal (2) G-P(sol) polarization free energy of solvation -69.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds