Wall clock time and date at job start Tue Mar 31 2020 06:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47449 * 2 1 4 4 C 1.42896 * 113.99767 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.95531 * 341.40384 * 4 3 2 6 6 C 1.53957 * 113.66117 * 112.81621 * 4 3 2 7 7 C 1.53948 * 87.29686 * 89.73605 * 6 4 3 8 8 H 1.08998 * 113.74464 * 270.24877 * 7 6 4 9 9 N 1.46497 * 113.66788 * 139.20409 * 7 6 4 10 10 C 1.34780 * 120.00137 * 107.80527 * 9 7 6 11 11 O 1.21582 * 119.99614 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99768 * 180.02562 * 10 9 7 13 13 C 1.46509 * 119.99620 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.46850 * 180.02562 * 13 12 10 15 15 H 1.08007 * 120.00381 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00082 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99931 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00354 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46905 * 60.00189 * 18 16 14 20 20 H 1.48495 * 109.47402 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47376 * 300.00208 * 18 16 14 22 22 C 1.52909 * 86.78501 * 24.73264 * 7 6 4 23 23 C 1.52910 * 121.13680 * 100.81909 * 22 7 6 24 24 C 1.53949 * 86.78077 * 100.82535 * 23 22 7 25 25 C 1.52905 * 121.13655 * 209.38636 * 22 7 6 26 26 H 1.09007 * 109.46829 * 59.99429 * 1 2 3 27 27 H 1.09000 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46850 * 300.00633 * 1 2 3 29 29 H 1.09005 * 109.46501 * 240.00044 * 2 1 3 30 30 H 1.08999 * 109.47165 * 120.00640 * 2 1 3 31 31 H 1.09001 * 113.57949 * 204.33501 * 6 4 3 32 32 H 1.08996 * 113.58143 * 335.13162 * 6 4 3 33 33 H 0.96999 * 119.99978 * 287.81717 * 9 7 6 34 34 H 0.96999 * 120.00346 * 0.02562 * 12 10 9 35 35 H 1.08991 * 109.47126 * 300.00557 * 13 12 10 36 36 H 1.08997 * 109.46609 * 60.00752 * 13 12 10 37 37 H 0.96993 * 120.00605 * 179.97438 * 17 16 14 38 38 H 1.09006 * 113.66074 * 215.29190 * 23 22 7 39 39 H 1.08994 * 113.66448 * 346.35155 * 23 22 7 40 40 H 1.09009 * 113.57633 * 270.12923 * 24 23 22 41 41 H 1.09000 * 113.65567 * 139.34741 * 24 23 22 42 42 H 1.08990 * 113.66878 * 13.64950 * 25 22 7 43 43 H 1.09008 * 113.66523 * 144.70973 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9299 0.5451 0.3191 6 6 4.0032 2.0540 -1.3005 7 6 3.8581 3.4395 -0.6453 8 1 2.8921 3.9112 -0.8254 9 7 4.9872 4.3353 -0.9077 10 6 4.8380 5.3800 -1.7461 11 8 3.7661 5.5792 -2.2842 12 7 5.8769 6.2037 -1.9878 13 6 5.7145 7.3397 -2.8987 14 6 7.0146 8.0955 -2.9958 15 1 7.8759 7.7628 -2.4355 16 6 7.1046 9.2118 -3.8001 17 7 6.0557 9.6172 -4.4821 18 14 8.7163 10.1483 -3.9210 19 1 9.7754 9.2460 -4.4400 20 1 8.5514 11.3005 -4.8432 21 1 9.1034 10.6434 -2.5755 22 6 3.9473 2.7175 0.6996 23 6 5.2491 2.6978 1.5017 24 6 4.6298 3.8086 2.3692 25 6 3.2511 3.2726 1.9427 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.0376 1.7685 -1.4921 32 1 3.3570 1.9114 -2.1666 33 1 5.8423 4.1764 -0.4782 34 1 6.7322 6.0446 -1.5588 35 1 5.4315 6.9758 -3.8864 36 1 4.9365 8.0017 -2.5187 37 1 6.1189 10.4027 -5.0475 38 1 5.4172 1.7649 2.0399 39 1 6.1193 3.0221 0.9312 40 1 4.8386 4.8143 2.0041 41 1 4.8314 3.6952 3.4344 42 1 2.5254 4.0560 1.7246 43 1 2.8577 2.5013 2.6050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787363404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:23 Heat of formation + Delta-G solvation = -38.176396 kcal Electronic energy + Delta-G solvation = -22496.981789 eV Core-core repulsion = 19157.659126 eV Total energy + Delta-G solvation = -3339.322662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06899 -38.72748 -37.48004 -34.84034 -33.98503 -32.80140 -32.03746 -30.75019 -27.14631 -25.96619 -24.79718 -24.30406 -23.02533 -22.33039 -20.94001 -20.07983 -18.68241 -17.82029 -17.03382 -16.21752 -15.96359 -15.82758 -15.40906 -15.00756 -14.65795 -14.44641 -13.75020 -13.49712 -13.38714 -12.94875 -12.76937 -12.62529 -12.42972 -12.27180 -11.96387 -11.91139 -11.76424 -11.65137 -11.46738 -11.02713 -10.95158 -10.84493 -10.53163 -10.40839 -10.26873 -10.11140 -9.39742 -9.34552 -9.31228 -8.69834 -8.57752 -7.70278 -6.11564 -4.18110 3.27973 3.28162 3.32424 3.33923 3.49133 3.97023 4.24711 4.35833 4.45542 4.58161 4.61809 4.76171 4.85589 4.91149 4.95282 5.09663 5.13075 5.16957 5.24219 5.36867 5.42334 5.52128 5.57076 5.60617 5.67513 5.77385 5.82116 5.90308 5.97121 6.02988 6.22313 6.26143 6.32974 6.98114 7.12562 7.20552 7.57092 7.60929 7.62565 7.96862 8.09974 8.81013 9.01015 9.39435 9.53883 10.98705 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029392 B = 0.003233 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.410384 B = 8659.932779 C = 9192.136596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.359 6.359 4 C 0.081 3.919 5 H 0.075 0.925 6 C -0.172 4.172 7 C 0.183 3.817 8 H 0.119 0.881 9 N -0.745 5.745 10 C 0.692 3.308 11 O -0.600 6.600 12 N -0.731 5.731 13 C 0.268 3.732 14 C -0.542 4.542 15 H 0.061 0.939 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.904 3.096 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.276 1.276 22 C -0.115 4.115 23 C -0.111 4.111 24 C -0.140 4.140 25 C -0.115 4.115 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.389 0.611 34 H 0.385 0.615 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 -20.209 13.681 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.022 3.978 5 H 0.093 0.907 6 C -0.211 4.211 7 C 0.076 3.924 8 H 0.137 0.863 9 N -0.401 5.401 10 C 0.392 3.608 11 O -0.479 6.479 12 N -0.382 5.382 13 C 0.146 3.854 14 C -0.580 4.580 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.116 4.116 23 C -0.149 4.149 24 C -0.177 4.177 25 C -0.153 4.153 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.224 0.776 34 H 0.217 0.783 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.132 -19.634 12.994 24.097 hybrid contribution 1.825 0.127 0.188 1.839 sum -3.306 -19.507 13.182 23.774 Atomic orbital electron populations 1.21745 0.93751 1.02079 1.03348 1.22515 0.95590 0.83997 0.99838 1.87929 1.19435 1.25960 1.94498 1.22713 0.81639 0.96844 0.96629 0.90673 1.24008 1.01610 0.97428 0.98070 1.21793 0.91597 0.87642 0.91385 0.86297 1.45186 1.14237 1.30154 1.50565 1.16205 0.85061 0.79583 0.79924 1.90868 1.26538 1.75280 1.55202 1.45722 1.11623 1.30605 1.50297 1.18955 0.97056 0.81483 0.87869 1.21197 0.96637 1.11770 1.28404 0.92051 1.24945 0.96973 0.97002 0.95123 1.69970 1.29202 1.24978 1.28167 0.86476 0.83139 0.79243 0.78022 1.20121 1.21096 1.20119 1.23293 0.98019 0.95745 0.94528 1.22565 0.95396 0.99600 0.97327 1.22858 0.96650 0.98851 0.99349 1.22552 0.96530 1.00252 0.95917 0.91662 0.91262 0.91842 0.93422 0.93582 0.89200 0.90338 0.77604 0.78299 0.95802 0.95787 0.92429 0.89704 0.91128 0.89771 0.91527 0.91041 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.06 0.49 6.50 37.16 0.24 0.73 16 3 O -0.36 -4.16 10.08 -35.23 -0.36 -4.52 16 4 C 0.08 0.85 4.17 -26.28 -0.11 0.74 16 5 H 0.08 0.64 7.87 -51.93 -0.41 0.23 16 6 C -0.17 -2.10 7.72 -25.75 -0.20 -2.30 16 7 C 0.18 2.61 4.08 -67.48 -0.28 2.34 16 8 H 0.12 2.09 7.46 -51.93 -0.39 1.70 16 9 N -0.75 -11.57 5.28 -58.24 -0.31 -11.87 16 10 C 0.69 14.77 8.57 -86.92 -0.74 14.02 16 11 O -0.60 -15.55 15.94 5.29 0.08 -15.46 16 12 N -0.73 -16.03 5.55 -66.41 -0.37 -16.40 16 13 C 0.27 7.33 5.43 -5.19 -0.03 7.30 16 14 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 15 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 18 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.11 -1.24 0.98 -154.71 -0.15 -1.39 16 23 C -0.11 -0.98 7.47 -26.28 -0.20 -1.18 16 24 C -0.14 -1.35 8.08 -25.75 -0.21 -1.56 16 25 C -0.12 -1.22 7.62 -26.28 -0.20 -1.42 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.39 4.91 6.74 -40.82 -0.28 4.63 16 34 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.60 6.42 -51.93 -0.33 0.27 16 40 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 0.77 8.14 -51.92 -0.42 0.35 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -33.27 353.34 -9.01 -42.28 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.20 Total: 7.48 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.91 Total: 2.89 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.06 Total: -54.08 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -0.27 Total: -19.98 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.27 -9.01 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.102 kcal (2) G-P(sol) polarization free energy of solvation -33.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds