Wall clock time and date at job start Tue Mar 31 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47449 * 2 1 4 4 C 1.42896 * 113.99767 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.95531 * 341.40384 * 4 3 2 6 6 C 1.53957 * 113.66117 * 112.81621 * 4 3 2 7 7 C 1.53948 * 87.29686 * 89.73605 * 6 4 3 8 8 H 1.08998 * 113.74464 * 270.24877 * 7 6 4 9 9 N 1.46497 * 113.66788 * 139.20409 * 7 6 4 10 10 C 1.34780 * 120.00137 * 107.80527 * 9 7 6 11 11 O 1.21582 * 119.99614 * 0.02562 * 10 9 7 12 12 N 1.34775 * 119.99768 * 180.02562 * 10 9 7 13 13 C 1.46509 * 119.99620 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.46850 * 180.02562 * 13 12 10 15 15 H 1.08007 * 120.00381 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00082 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99931 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00354 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46905 * 60.00189 * 18 16 14 20 20 H 1.48495 * 109.47402 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47376 * 300.00208 * 18 16 14 22 22 C 1.52909 * 86.78501 * 24.73264 * 7 6 4 23 23 C 1.52910 * 121.13680 * 100.81909 * 22 7 6 24 24 C 1.53949 * 86.78077 * 100.82535 * 23 22 7 25 25 C 1.52905 * 121.13655 * 209.38636 * 22 7 6 26 26 H 1.09007 * 109.46829 * 59.99429 * 1 2 3 27 27 H 1.09000 * 109.47419 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46850 * 300.00633 * 1 2 3 29 29 H 1.09005 * 109.46501 * 240.00044 * 2 1 3 30 30 H 1.08999 * 109.47165 * 120.00640 * 2 1 3 31 31 H 1.09001 * 113.57949 * 204.33501 * 6 4 3 32 32 H 1.08996 * 113.58143 * 335.13162 * 6 4 3 33 33 H 0.96999 * 119.99978 * 287.81717 * 9 7 6 34 34 H 0.96999 * 120.00346 * 0.02562 * 12 10 9 35 35 H 1.08991 * 109.47126 * 300.00557 * 13 12 10 36 36 H 1.08997 * 109.46609 * 60.00752 * 13 12 10 37 37 H 0.96993 * 120.00605 * 179.97438 * 17 16 14 38 38 H 1.09006 * 113.66074 * 215.29190 * 23 22 7 39 39 H 1.08994 * 113.66448 * 346.35155 * 23 22 7 40 40 H 1.09009 * 113.57633 * 270.12923 * 24 23 22 41 41 H 1.09000 * 113.65567 * 139.34741 * 24 23 22 42 42 H 1.08990 * 113.66878 * 13.64950 * 25 22 7 43 43 H 1.09008 * 113.66523 * 144.70973 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9299 0.5451 0.3191 6 6 4.0032 2.0540 -1.3005 7 6 3.8581 3.4395 -0.6453 8 1 2.8921 3.9112 -0.8254 9 7 4.9872 4.3353 -0.9077 10 6 4.8380 5.3800 -1.7461 11 8 3.7661 5.5792 -2.2842 12 7 5.8769 6.2037 -1.9878 13 6 5.7145 7.3397 -2.8987 14 6 7.0146 8.0955 -2.9958 15 1 7.8759 7.7628 -2.4355 16 6 7.1046 9.2118 -3.8001 17 7 6.0557 9.6172 -4.4821 18 14 8.7163 10.1483 -3.9210 19 1 9.7754 9.2460 -4.4400 20 1 8.5514 11.3005 -4.8432 21 1 9.1034 10.6434 -2.5755 22 6 3.9473 2.7175 0.6996 23 6 5.2491 2.6978 1.5017 24 6 4.6298 3.8086 2.3692 25 6 3.2511 3.2726 1.9427 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 5.0376 1.7685 -1.4921 32 1 3.3570 1.9114 -2.1666 33 1 5.8423 4.1764 -0.4782 34 1 6.7322 6.0446 -1.5588 35 1 5.4315 6.9758 -3.8864 36 1 4.9365 8.0017 -2.5187 37 1 6.1189 10.4027 -5.0475 38 1 5.4172 1.7649 2.0399 39 1 6.1193 3.0221 0.9312 40 1 4.8386 4.8143 2.0041 41 1 4.8314 3.6952 3.4344 42 1 2.5254 4.0560 1.7246 43 1 2.8577 2.5013 2.6050 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787363404.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:22 Heat of formation + Delta-G solvation = -62.078740 kcal Electronic energy + Delta-G solvation = -22498.018272 eV Core-core repulsion = 19157.659126 eV Total energy + Delta-G solvation = -3340.359146 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.08907 -40.39780 -38.29245 -36.26085 -35.71440 -34.50926 -33.66229 -31.55182 -29.20248 -26.75591 -25.81169 -25.56704 -24.20761 -23.67546 -21.92524 -21.73960 -20.09824 -19.19883 -18.09789 -17.87430 -17.16091 -16.77584 -16.65797 -16.32576 -16.17645 -16.07875 -15.22812 -14.93668 -14.33279 -14.20006 -14.05687 -13.99384 -13.53215 -13.41868 -13.18398 -13.12419 -12.91048 -12.70050 -12.63917 -12.59606 -12.22811 -12.21634 -11.84883 -11.50267 -11.38249 -11.29807 -11.18570 -10.99641 -10.78955 -10.22906 -10.15921 -9.55710 -8.27696 -6.44687 1.43411 1.48390 1.56366 1.89706 2.23100 2.40220 2.57106 3.06940 3.33394 3.52735 3.56785 3.76122 3.80660 3.85214 3.99447 4.22696 4.23645 4.41472 4.47639 4.53662 4.55155 4.75016 4.80284 4.88526 4.93588 4.97539 5.02871 5.06289 5.07008 5.12686 5.19918 5.26744 5.28981 5.38699 5.49326 5.52856 5.63489 5.70189 5.85365 6.28717 6.38578 6.67049 7.24681 7.33081 7.73920 8.84674 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029392 B = 0.003233 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.410384 B = 8659.932779 C = 9192.136596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.388 6.388 4 C 0.092 3.908 5 H 0.110 0.890 6 C -0.168 4.168 7 C 0.161 3.839 8 H 0.075 0.925 9 N -0.717 5.717 10 C 0.690 3.310 11 O -0.652 6.652 12 N -0.722 5.722 13 C 0.286 3.714 14 C -0.555 4.555 15 H 0.085 0.915 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.988 3.012 19 H -0.261 1.261 20 H -0.286 1.286 21 H -0.261 1.261 22 C -0.108 4.108 23 C -0.097 4.097 24 C -0.140 4.140 25 C -0.119 4.119 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.409 0.591 34 H 0.405 0.595 35 H -0.016 1.016 36 H -0.017 1.017 37 H 0.269 0.731 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.086 0.914 42 H 0.043 0.957 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -22.328 15.782 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.307 6.307 4 C 0.033 3.967 5 H 0.128 0.872 6 C -0.208 4.208 7 C 0.055 3.945 8 H 0.093 0.907 9 N -0.373 5.373 10 C 0.390 3.610 11 O -0.535 6.535 12 N -0.376 5.376 13 C 0.163 3.837 14 C -0.593 4.593 15 H 0.103 0.897 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.811 3.189 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.109 4.109 23 C -0.134 4.134 24 C -0.177 4.177 25 C -0.156 4.156 26 H 0.067 0.933 27 H 0.111 0.889 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.240 0.760 35 H 0.001 0.999 36 H 0.001 0.999 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.306 -21.828 15.161 26.676 hybrid contribution 0.816 0.736 -0.452 1.188 sum -1.489 -21.092 14.709 25.757 Atomic orbital electron populations 1.21779 0.93525 1.03284 1.02335 1.22735 0.95907 0.82802 1.01119 1.87922 1.20177 1.28101 1.94497 1.22691 0.81492 0.97805 0.94716 0.87186 1.24025 1.02597 0.95745 0.98403 1.21954 0.89164 0.87969 0.95378 0.90688 1.44914 1.15641 1.28219 1.48575 1.16402 0.83952 0.80420 0.80248 1.90834 1.28585 1.76720 1.57356 1.45290 1.12839 1.29608 1.49862 1.18386 0.96410 0.82284 0.86621 1.21571 0.96919 1.11996 1.28799 0.89710 1.26103 1.01245 0.98055 0.94306 1.70146 1.32161 1.25700 1.29065 0.85165 0.77759 0.77468 0.78548 1.18546 1.21116 1.18598 1.23231 1.00066 0.94830 0.92822 1.22623 0.93977 1.00479 0.96363 1.22829 0.95904 0.98163 1.00795 1.22610 0.96605 1.00105 0.96290 0.93259 0.88937 0.92281 0.92821 0.91428 0.87208 0.92353 0.75308 0.76010 0.99850 0.99932 0.92233 0.86602 0.90450 0.91895 0.89520 0.93829 0.88254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 10.28 71.98 0.74 -1.42 16 2 C 0.05 0.76 6.50 71.98 0.47 1.23 16 3 O -0.39 -8.63 10.08 -148.98 -1.50 -10.14 16 4 C 0.09 1.72 4.17 30.89 0.13 1.85 16 5 H 0.11 1.36 7.87 -2.39 -0.02 1.34 16 6 C -0.17 -3.98 7.72 31.23 0.24 -3.74 16 7 C 0.16 4.71 4.08 45.28 0.18 4.89 16 8 H 0.07 2.88 7.46 -2.39 -0.02 2.86 16 9 N -0.72 -22.32 5.28 -456.43 -2.41 -24.73 16 10 C 0.69 30.62 8.57 179.05 1.53 32.15 16 11 O -0.65 -36.16 15.94 -3.97 -0.06 -36.22 16 12 N -0.72 -32.48 5.55 -482.30 -2.68 -35.16 16 13 C 0.29 16.45 5.43 85.63 0.46 16.91 16 14 C -0.56 -30.89 9.28 25.60 0.24 -30.65 16 15 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 16 C 0.00 0.13 5.46 84.65 0.46 0.60 16 17 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 18 Si 0.99 42.83 29.54 68.60 2.03 44.85 16 19 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 20 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 22 C -0.11 -2.17 0.98 -52.31 -0.05 -2.22 16 23 C -0.10 -1.35 7.47 30.88 0.23 -1.11 16 24 C -0.14 -2.39 8.08 31.23 0.25 -2.14 16 25 C -0.12 -2.38 7.62 30.88 0.24 -2.15 16 26 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.73 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.41 9.61 6.74 -92.71 -0.62 8.99 16 34 H 0.40 14.83 8.34 -92.71 -0.77 14.06 16 35 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 36 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 37 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.12 1.01 8.14 -2.38 -0.02 1.00 16 39 H 0.08 1.00 6.42 -2.39 -0.02 0.98 16 40 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -77.55 353.34 0.39 -77.16 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.39 Total: 27.25 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 5.13 Total: 14.20 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -4.80 Total: -117.10 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -1.56 Total: -46.36 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -77.55 0.39 -77.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363404.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.080 kcal (2) G-P(sol) polarization free energy of solvation -77.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds