Wall clock time and date at job start Tue Mar 31 2020 06:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42901 * 109.47048 * 2 1 4 4 C 1.42904 * 113.99880 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.88346 * 18.65851 * 4 3 2 6 6 C 1.53948 * 113.66368 * 247.18845 * 4 3 2 7 7 C 1.53955 * 87.29618 * 270.26222 * 6 4 3 8 8 H 1.08992 * 113.74524 * 220.78256 * 7 6 4 9 9 N 1.46500 * 113.65928 * 89.74092 * 7 6 4 10 10 C 1.34772 * 120.00121 * 107.81740 * 9 7 6 11 11 O 1.21592 * 119.99813 * 359.97438 * 10 9 7 12 12 N 1.34780 * 120.00305 * 179.97438 * 10 9 7 13 13 C 1.46491 * 120.00091 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46957 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.52908 * 86.78347 * 335.26905 * 7 6 4 23 23 C 1.52910 * 121.13738 * 259.18092 * 22 7 6 24 24 C 1.53941 * 86.78228 * 209.37752 * 23 22 7 25 25 C 1.52907 * 121.14032 * 150.61852 * 22 7 6 26 26 H 1.09004 * 109.47503 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47466 * 299.99437 * 1 2 3 28 28 H 1.09009 * 109.47421 * 59.99976 * 1 2 3 29 29 H 1.09000 * 109.46999 * 240.00484 * 2 1 3 30 30 H 1.08996 * 109.47371 * 120.00315 * 2 1 3 31 31 H 1.09002 * 113.57757 * 155.66075 * 6 4 3 32 32 H 1.08998 * 113.57774 * 24.86672 * 6 4 3 33 33 H 0.97005 * 120.00110 * 287.80622 * 9 7 6 34 34 H 0.97003 * 119.99349 * 359.97438 * 12 10 9 35 35 H 1.09004 * 109.47166 * 60.00164 * 13 12 10 36 36 H 1.08994 * 109.47507 * 299.99870 * 13 12 10 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.09003 * 113.66353 * 323.85328 * 23 22 7 39 39 H 1.09001 * 113.66352 * 94.90193 * 23 22 7 40 40 H 1.09009 * 113.58255 * 270.12622 * 24 23 22 41 41 H 1.09005 * 113.65301 * 139.34580 * 24 23 22 42 42 H 1.09000 * 113.66082 * 265.09119 * 25 22 7 43 43 H 1.08993 * 113.66175 * 36.14444 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9286 0.5451 -0.3203 6 6 4.0031 2.0541 1.3005 7 6 3.8579 3.4397 0.6453 8 1 4.6972 4.1073 0.8399 9 7 2.5589 4.0717 0.8884 10 6 2.4672 5.1226 1.7271 11 8 3.4626 5.5459 2.2824 12 7 1.2721 5.7045 1.9504 13 6 1.1724 6.8465 2.8625 14 6 -0.2606 7.3072 2.9357 15 1 -1.0211 6.7998 2.3607 16 6 -0.6019 8.3726 3.7417 17 7 0.3241 8.9902 4.4423 18 14 -2.3793 8.9388 3.8384 19 1 -3.2194 8.0843 2.9614 20 1 -2.8578 8.8302 5.2401 21 1 -2.4738 10.3517 3.3913 22 6 3.9471 2.7177 -0.6997 23 6 5.2488 2.6980 -1.5018 24 6 4.3694 2.6034 -2.7618 25 6 3.2509 3.2727 -1.9428 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 5.0375 1.7685 1.4919 32 1 3.3568 1.9114 2.1665 33 1 1.7646 3.7339 0.4455 34 1 0.4781 5.3670 1.5070 35 1 1.7971 7.6606 2.4950 36 1 1.5100 6.5491 3.8553 37 1 0.0841 9.7400 5.0090 38 1 5.8183 3.6250 -1.4343 39 1 5.8578 1.8114 -1.3257 40 1 4.1402 1.5796 -3.0577 41 1 4.7270 3.2133 -3.5914 42 1 2.2639 2.8452 -2.1190 43 1 3.2588 4.3612 -1.9992 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787363405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:25 Heat of formation + Delta-G solvation = -38.897896 kcal Electronic energy + Delta-G solvation = -22797.909125 eV Core-core repulsion = 19458.555176 eV Total energy + Delta-G solvation = -3339.353949 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.05418 -38.66477 -37.39821 -35.02409 -33.94698 -32.53153 -31.85906 -30.80100 -27.09406 -25.82895 -24.83346 -24.36090 -22.99785 -22.45353 -20.90554 -19.89963 -18.52992 -17.99383 -16.67254 -16.20927 -15.92890 -15.70950 -15.53584 -14.99274 -14.67052 -14.44075 -13.75500 -13.63351 -13.10947 -12.96586 -12.93589 -12.73857 -12.44464 -12.04981 -11.93077 -11.88418 -11.80261 -11.66985 -11.30074 -11.07636 -10.87558 -10.85915 -10.47338 -10.30460 -10.24831 -10.03089 -9.45493 -9.28430 -9.26823 -8.66957 -8.48679 -7.64202 -6.09555 -4.15369 3.14635 3.27959 3.34721 3.38140 3.60287 4.03254 4.32302 4.39307 4.46693 4.59650 4.62128 4.76581 4.88117 4.93608 4.98328 5.11325 5.15300 5.26560 5.27726 5.34135 5.44610 5.53762 5.66912 5.68944 5.71235 5.72802 5.79994 5.94981 5.96213 6.03448 6.11928 6.23189 6.36614 7.07443 7.17034 7.28429 7.62379 7.65676 7.67225 8.01959 8.16907 8.85191 9.08164 9.43773 9.59127 11.00863 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.003863 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.744990 B = 7246.030985 C = 7948.718951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.361 6.361 4 C 0.093 3.907 5 H 0.071 0.929 6 C -0.176 4.176 7 C 0.168 3.832 8 H 0.099 0.901 9 N -0.729 5.729 10 C 0.694 3.306 11 O -0.605 6.605 12 N -0.730 5.730 13 C 0.267 3.733 14 C -0.539 4.539 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.119 4.119 23 C -0.105 4.105 24 C -0.140 4.140 25 C -0.118 4.118 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.397 0.603 34 H 0.386 0.614 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.373 -19.510 -13.782 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.280 6.280 4 C 0.034 3.966 5 H 0.089 0.911 6 C -0.215 4.215 7 C 0.060 3.940 8 H 0.117 0.883 9 N -0.384 5.384 10 C 0.394 3.606 11 O -0.485 6.485 12 N -0.382 5.382 13 C 0.146 3.854 14 C -0.577 4.577 15 H 0.081 0.919 16 C -0.141 4.141 17 N -0.524 5.524 18 Si 0.731 3.269 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.178 4.178 25 C -0.155 4.155 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.231 0.769 34 H 0.218 0.782 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.157 -18.739 -13.088 23.672 hybrid contribution -1.531 -0.251 -0.177 1.561 sum 4.627 -18.991 -13.265 23.622 Atomic orbital electron populations 1.21751 0.93614 1.02158 1.03456 1.22497 0.95616 0.83772 0.99765 1.87844 1.19466 1.26197 1.94456 1.22716 0.81631 0.96183 0.96046 0.91137 1.24009 1.01516 0.97985 0.97989 1.21199 0.87199 0.92693 0.92861 0.88289 1.44683 1.09642 1.34053 1.50017 1.16154 0.84800 0.79706 0.79914 1.90851 1.36071 1.66888 1.54647 1.45687 1.06711 1.35899 1.49890 1.18954 0.96744 0.81831 0.87865 1.21286 0.93056 1.15775 1.27620 0.91926 1.24945 0.97920 0.96098 0.95107 1.69998 1.32829 1.21800 1.27762 0.86370 0.84132 0.78550 0.77884 1.19675 1.20863 1.20847 1.23214 0.98404 0.96361 0.94074 1.22560 0.94375 1.02629 0.94687 1.22846 0.97375 1.00867 0.96692 1.22522 0.98249 1.00593 0.94148 0.91273 0.91520 0.91805 0.93635 0.93466 0.88790 0.90240 0.76852 0.78209 0.95824 0.95838 0.92598 0.89071 0.91240 0.90574 0.91425 0.90862 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.28 37.16 0.38 -0.85 16 2 C 0.06 0.52 6.50 37.16 0.24 0.76 16 3 O -0.36 -4.03 8.68 -35.23 -0.31 -4.34 16 4 C 0.09 0.96 4.17 -26.28 -0.11 0.85 16 5 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 6 C -0.18 -2.14 7.72 -25.75 -0.20 -2.34 16 7 C 0.17 2.41 4.12 -67.48 -0.28 2.13 16 8 H 0.10 1.61 7.46 -51.93 -0.39 1.23 16 9 N -0.73 -12.13 4.95 -58.24 -0.29 -12.42 16 10 C 0.69 15.26 8.57 -86.92 -0.74 14.52 16 11 O -0.60 -15.80 15.94 5.28 0.08 -15.72 16 12 N -0.73 -16.56 5.55 -66.42 -0.37 -16.93 16 13 C 0.27 7.43 5.43 -5.20 -0.03 7.40 16 14 C -0.54 -15.09 9.28 -34.44 -0.32 -15.41 16 15 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 18 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.12 -1.28 0.84 -154.71 -0.13 -1.41 16 23 C -0.10 -0.92 7.84 -26.29 -0.21 -1.13 16 24 C -0.14 -1.18 8.08 -25.76 -0.21 -1.39 16 25 C -0.12 -1.24 7.36 -26.29 -0.19 -1.43 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.40 5.98 7.60 -40.82 -0.31 5.67 16 34 H 0.39 7.65 8.34 -40.82 -0.34 7.31 16 35 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.79 7.83 -51.93 -0.41 0.38 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 353.90 15.07 5.33 5.33 Total: -1.00 -33.11 353.90 -9.03 -42.14 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.31 Total: 8.25 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -1.89 Total: 3.38 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.08 Total: -55.32 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.22 Total: -20.06 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.11 -9.03 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787363405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.238 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds