Wall clock time and date at job start Tue Mar 31 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 108.17674 * 2 1 4 4 C 1.54413 * 108.27763 * 242.86309 * 2 1 3 5 5 O 1.44836 * 110.83212 * 196.84110 * 4 2 1 6 6 C 1.39721 * 115.22028 * 321.14823 * 5 4 2 7 7 C 1.52675 * 106.09082 * 98.06940 * 6 5 4 8 8 C 1.46921 * 113.62160 * 271.72167 * 7 6 5 9 9 N 1.43761 * 108.28038 * 117.13912 * 2 1 3 10 10 C 1.34777 * 120.42524 * 29.32882 * 9 2 1 11 11 O 1.21590 * 119.99913 * 4.84362 * 10 9 2 12 12 N 1.34772 * 120.00161 * 184.84348 * 10 9 2 13 13 C 1.46499 * 120.00252 * 184.79090 * 12 10 9 14 14 C 1.53007 * 109.47076 * 175.00042 * 13 12 10 15 15 C 1.50697 * 115.54794 * 304.43194 * 14 13 12 16 16 H 1.08000 * 119.99965 * 144.28930 * 15 14 13 17 17 C 1.37878 * 120.00210 * 324.28476 * 15 14 13 18 18 N 1.31515 * 119.99717 * 3.26345 * 17 15 14 19 19 Si 1.86792 * 120.00376 * 183.26528 * 17 15 14 20 20 H 1.48500 * 109.47269 * 59.99723 * 19 17 15 21 21 H 1.48500 * 109.47406 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47102 * 300.00169 * 19 17 15 23 23 C 1.52999 * 117.49590 * 158.76073 * 14 13 12 24 24 C 1.52998 * 117.49704 * 90.09795 * 14 13 12 25 25 H 1.09001 * 109.47114 * 285.79563 * 1 2 3 26 26 H 1.08996 * 109.47412 * 165.79372 * 1 2 3 27 27 H 1.08995 * 109.47416 * 45.79146 * 1 2 3 28 28 H 1.09001 * 109.22083 * 317.35699 * 4 2 1 29 29 H 1.09006 * 109.21666 * 76.69608 * 4 2 1 30 30 H 1.09005 * 110.11513 * 338.93022 * 6 5 4 31 31 H 1.09003 * 110.22458 * 217.27046 * 6 5 4 32 32 H 1.09001 * 108.65740 * 150.65022 * 7 6 5 33 33 H 1.08998 * 108.65603 * 32.78938 * 7 6 5 34 34 H 1.09002 * 109.87133 * 298.49361 * 8 7 6 35 35 H 1.09000 * 109.93688 * 177.47445 * 8 7 6 36 36 H 0.97007 * 119.99932 * 4.79096 * 12 10 9 37 37 H 1.09001 * 109.46834 * 294.99843 * 13 12 10 38 38 H 1.08997 * 109.46839 * 55.00308 * 13 12 10 39 39 H 0.97000 * 119.99980 * 185.00493 * 18 17 15 40 40 H 1.09000 * 117.50008 * 359.97438 * 23 14 13 41 41 H 1.08998 * 117.49625 * 145.02415 * 23 14 13 42 42 H 1.08997 * 117.49874 * 214.97635 * 24 14 13 43 43 H 1.08999 * 117.50460 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8700 1.0356 0.0000 4 6 2.0143 -0.6688 -1.3048 5 8 3.4060 -1.0555 -1.1996 6 6 4.2259 -0.1501 -0.5212 7 6 4.3523 -0.6802 0.9050 8 6 3.2935 -0.2046 1.8058 9 7 1.9809 -0.6227 1.2148 10 6 1.2329 -1.5699 1.8147 11 8 0.2132 -1.9659 1.2838 12 7 1.6152 -2.0781 3.0029 13 6 0.8610 -3.1803 3.6050 14 6 1.5701 -3.6483 4.8775 15 6 3.0118 -4.0525 4.7069 16 1 3.7272 -3.8442 5.4888 17 6 3.4176 -4.6883 3.5527 18 7 2.5611 -4.8846 2.5742 19 14 5.1839 -5.2709 3.3788 20 1 5.4908 -6.2484 4.4538 21 1 5.3636 -5.9181 2.0544 22 1 6.1016 -4.1087 3.4899 23 6 0.7387 -4.4145 5.9083 24 6 1.1761 -2.9755 6.1939 25 1 -0.3633 0.2797 0.9889 26 1 -0.3634 -0.9962 -0.2522 27 1 -0.3634 0.7165 -0.7366 28 1 1.4079 -1.5530 -1.5013 29 1 1.9019 0.0334 -2.1310 30 1 3.7672 0.8387 -0.5144 31 1 5.2076 -0.1043 -0.9926 32 1 5.3171 -0.3716 1.3075 33 1 4.3221 -1.7694 0.8761 34 1 3.3348 0.8817 1.8852 35 1 3.4154 -0.6528 2.7919 36 1 2.3898 -1.7140 3.4596 37 1 -0.1441 -2.8397 3.8535 38 1 0.8000 -4.0076 2.8979 39 1 2.8259 -5.3951 1.7931 40 1 -0.3134 -4.5847 5.6802 41 1 1.2347 -5.2106 6.4635 42 1 1.9595 -2.8257 6.9368 43 1 0.4120 -2.1992 6.1534 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563589.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:54 Heat of formation + Delta-G solvation = -23.158370 kcal Electronic energy + Delta-G solvation = -24353.085168 eV Core-core repulsion = 21014.413736 eV Total energy + Delta-G solvation = -3338.671432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28217 -38.15184 -36.73946 -34.90535 -34.10350 -32.50094 -32.10472 -29.62939 -26.79813 -25.86774 -25.17845 -24.94543 -22.18889 -21.22221 -20.82307 -19.21885 -18.78292 -17.28952 -16.91954 -16.20751 -15.76994 -15.45609 -14.81963 -14.68819 -14.40095 -14.00322 -13.78677 -13.44128 -13.16771 -12.82619 -12.61728 -12.39514 -11.93602 -11.67296 -11.59005 -11.40762 -11.27876 -11.10315 -11.05198 -10.94890 -10.69744 -10.50223 -10.31688 -10.21488 -9.62753 -9.38447 -8.98869 -8.79936 -8.69813 -8.26769 -8.22140 -7.60286 -5.94624 -4.15689 3.21326 3.24258 3.32434 3.33318 4.04021 4.15467 4.32096 4.59007 4.89270 4.96831 4.99860 5.16597 5.28414 5.33504 5.40408 5.49148 5.52316 5.71664 5.72310 5.92381 5.95692 5.98226 6.07573 6.18265 6.28639 6.34441 6.47182 6.57733 6.63845 6.70316 6.77741 6.91165 7.03039 7.20662 7.28548 7.48358 7.60477 7.71778 7.84437 8.06218 8.35646 8.80117 8.99241 9.47913 9.59033 10.93750 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016352 B = 0.007294 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.889372 B = 3837.887131 C = 4827.850186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.137 3.863 3 H 0.066 0.934 4 C 0.049 3.951 5 O -0.381 6.381 6 C 0.071 3.929 7 C -0.176 4.176 8 C 0.119 3.881 9 N -0.629 5.629 10 C 0.710 3.290 11 O -0.599 6.599 12 N -0.701 5.701 13 C 0.181 3.819 14 C 0.038 3.962 15 C -0.499 4.499 16 H 0.058 0.942 17 C 0.078 3.922 18 N -0.861 5.861 19 Si 0.890 3.110 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.198 4.198 24 C -0.214 4.214 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.040 0.960 28 H 0.093 0.907 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.390 0.610 37 H 0.013 0.987 38 H 0.116 0.884 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.703 11.455 -4.511 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.030 3.970 3 H 0.084 0.916 4 C -0.029 4.029 5 O -0.299 6.299 6 C -0.007 4.007 7 C -0.215 4.215 8 C -0.003 4.003 9 N -0.368 5.368 10 C 0.412 3.588 11 O -0.480 6.480 12 N -0.353 5.353 13 C 0.057 3.943 14 C 0.037 3.963 15 C -0.537 4.537 16 H 0.077 0.923 17 C -0.127 4.127 18 N -0.496 5.496 19 Si 0.718 3.282 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.237 4.237 24 C -0.251 4.251 25 H 0.076 0.924 26 H 0.113 0.887 27 H 0.059 0.941 28 H 0.111 0.889 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.225 0.775 37 H 0.031 0.969 38 H 0.133 0.867 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.013 10.915 -5.166 12.119 hybrid contribution 1.393 0.000 0.407 1.451 sum 2.406 10.915 -4.759 12.148 Atomic orbital electron populations 1.22268 0.93044 1.03950 1.01427 1.20911 0.96431 0.94931 0.84696 0.91635 1.23868 0.82172 1.00896 0.95948 1.87651 1.18756 1.46513 1.76976 1.21950 0.94651 0.92475 0.91618 1.21574 0.99077 1.04314 0.96491 1.21014 0.82571 0.99182 0.97524 1.47258 1.21626 1.43099 1.24786 1.15811 0.82913 0.78831 0.81283 1.90774 1.26966 1.64127 1.66107 1.44988 1.33364 1.37375 1.19566 1.20979 0.88984 0.89076 0.95222 1.19251 0.94841 0.96578 0.85643 1.20424 0.91491 1.39646 1.02110 0.92349 1.24965 0.97271 0.95447 0.95062 1.69834 1.34433 1.37989 1.07358 0.86696 0.85050 0.79171 0.77311 1.20329 1.21204 1.20217 1.22932 0.98919 0.93697 1.08156 1.22947 1.02930 0.95039 1.04180 0.92423 0.88669 0.94149 0.88871 0.92483 0.93110 0.90176 0.90970 0.89676 0.91580 0.89246 0.77452 0.96861 0.86665 0.92631 0.91489 0.90267 0.90747 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 7.70 37.16 0.29 -2.00 16 2 C 0.14 2.03 2.27 -68.64 -0.16 1.87 16 3 H 0.07 0.81 7.06 -51.93 -0.37 0.44 16 4 C 0.05 0.72 6.61 37.90 0.25 0.97 16 5 O -0.38 -6.20 10.18 -32.17 -0.33 -6.53 16 6 C 0.07 0.91 6.46 36.99 0.24 1.15 16 7 C -0.18 -2.50 5.41 -29.81 -0.16 -2.66 16 8 C 0.12 1.70 6.08 -5.06 -0.03 1.67 16 9 N -0.63 -10.81 2.66 -173.50 -0.46 -11.27 16 10 C 0.71 15.20 7.75 -86.92 -0.67 14.53 16 11 O -0.60 -14.41 12.86 5.29 0.07 -14.34 16 12 N -0.70 -15.33 5.11 -65.22 -0.33 -15.66 16 13 C 0.18 4.35 4.61 -4.04 -0.02 4.33 16 14 C 0.04 0.89 2.01 -155.66 -0.31 0.58 16 15 C -0.50 -12.69 8.49 -34.44 -0.29 -12.98 16 16 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 17 C 0.08 1.99 5.35 -17.82 -0.10 1.90 16 18 N -0.86 -23.22 10.22 55.43 0.57 -22.65 16 19 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 C -0.20 -4.37 9.96 -26.69 -0.27 -4.63 16 24 C -0.21 -4.46 9.93 -26.69 -0.27 -4.73 16 25 H 0.06 0.96 7.56 -51.93 -0.39 0.57 16 26 H 0.09 1.73 5.91 -51.93 -0.31 1.42 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.09 1.53 7.79 -51.93 -0.40 1.13 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.55 6.34 -51.93 -0.33 0.23 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.35 5.65 -51.93 -0.29 1.06 16 36 H 0.39 8.09 5.65 -40.82 -0.23 7.86 16 37 H 0.01 0.32 8.10 -51.93 -0.42 -0.10 16 38 H 0.12 3.19 5.83 -51.93 -0.30 2.88 16 39 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -29.09 331.78 -8.82 -37.91 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.81 Total: 12.23 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.50 Total: 0.01 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.23 Total: -49.59 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.26 Total: -20.87 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.09 -8.82 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563589.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.753 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds