Wall clock time and date at job start Tue Mar 31 2020 05:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.44459 * 2 1 4 4 C 1.54803 * 109.45925 * 119.96372 * 2 1 3 5 5 O 1.38008 * 109.47898 * 52.13425 * 4 2 1 6 6 C 1.42152 * 119.44112 * 63.42307 * 5 4 2 7 7 C 1.51531 * 108.76387 * 272.78027 * 6 5 4 8 8 C 1.53575 * 109.58338 * 91.39796 * 7 6 5 9 9 N 1.45118 * 109.45722 * 240.03486 * 2 1 3 10 10 C 1.34778 * 118.75845 * 149.26979 * 9 2 1 11 11 O 1.21590 * 119.99771 * 355.21874 * 10 9 2 12 12 N 1.34772 * 120.00527 * 175.21648 * 10 9 2 13 13 C 1.46496 * 120.00550 * 184.99810 * 12 10 9 14 14 C 1.52997 * 109.47224 * 175.00694 * 13 12 10 15 15 C 1.50695 * 115.55376 * 305.46871 * 14 13 12 16 16 H 1.07993 * 120.00270 * 144.37466 * 15 14 13 17 17 C 1.37884 * 119.99700 * 324.37834 * 15 14 13 18 18 N 1.31507 * 120.00151 * 3.37421 * 17 15 14 19 19 Si 1.86798 * 119.99746 * 183.38061 * 17 15 14 20 20 H 1.48501 * 109.47355 * 59.99916 * 19 17 15 21 21 H 1.48506 * 109.46967 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47346 * 299.99523 * 19 17 15 23 23 C 1.53005 * 117.49736 * 159.79725 * 14 13 12 24 24 C 1.53003 * 117.49722 * 91.13930 * 14 13 12 25 25 H 1.09009 * 109.46884 * 318.74756 * 1 2 3 26 26 H 1.09002 * 109.47286 * 78.73833 * 1 2 3 27 27 H 1.08988 * 109.47550 * 198.74721 * 1 2 3 28 28 H 1.09005 * 109.47190 * 292.13256 * 4 2 1 29 29 H 1.08997 * 109.46710 * 172.13793 * 4 2 1 30 30 H 1.09003 * 109.58192 * 32.56504 * 6 5 4 31 31 H 1.09003 * 109.59333 * 152.84744 * 6 5 4 32 32 H 1.08999 * 109.45249 * 211.42817 * 7 6 5 33 33 H 1.09002 * 109.45283 * 331.38176 * 7 6 5 34 34 H 1.09001 * 109.16687 * 80.42094 * 8 7 6 35 35 H 1.08994 * 109.16686 * 199.67611 * 8 7 6 36 36 H 0.97000 * 119.99604 * 4.99008 * 12 10 9 37 37 H 1.08999 * 109.46750 * 295.01114 * 13 12 10 38 38 H 1.09004 * 109.46825 * 55.00631 * 13 12 10 39 39 H 0.97001 * 120.00523 * 185.00393 * 18 17 15 40 40 H 1.08998 * 117.49688 * 0.02562 * 23 14 13 41 41 H 1.09002 * 117.49886 * 145.01956 * 23 14 13 42 42 H 1.08994 * 117.49961 * 214.97787 * 24 14 13 43 43 H 1.08995 * 117.49934 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0279 0.0000 4 6 2.0457 -0.7290 1.2645 5 8 1.4460 -1.9685 1.3579 6 6 1.6857 -2.9386 0.3469 7 6 0.6821 -2.7365 -0.7703 8 6 1.2689 -1.7854 -1.8236 9 7 2.0134 -0.6834 -1.1854 10 6 3.1870 -0.2968 -1.7236 11 8 3.7769 0.6645 -1.2691 12 7 3.7069 -0.9755 -2.7654 13 6 5.0328 -0.6245 -3.2802 14 6 5.4359 -1.6187 -4.3710 15 6 5.3922 -3.0719 -3.9745 16 1 5.0908 -3.8190 -4.6937 17 6 5.7371 -3.4476 -2.6935 18 7 6.0400 -2.5325 -1.7989 19 14 5.7742 -5.2564 -2.2288 20 1 6.7546 -5.9682 -3.0876 21 1 6.1729 -5.3936 -0.8048 22 1 4.4252 -5.8456 -2.4245 23 6 6.5277 -1.1866 -5.3521 24 6 5.0710 -1.2691 -5.8152 25 1 -0.3633 0.7727 0.6777 26 1 -0.3634 0.2007 -1.0079 27 1 -0.3634 -0.9730 0.3302 28 1 1.8017 -0.1398 2.1485 29 1 3.1266 -0.8525 1.1972 30 1 2.6963 -2.8176 -0.0433 31 1 1.5730 -3.9386 0.7658 32 1 0.4566 -3.6969 -1.2339 33 1 -0.2329 -2.3064 -0.3629 34 1 1.9428 -2.3433 -2.4737 35 1 0.4581 -1.3693 -2.4214 36 1 3.2032 -1.6966 -3.1743 37 1 5.0056 0.3819 -3.6977 38 1 5.7592 -0.6616 -2.4683 39 1 6.3525 -2.7982 -0.9199 40 1 6.9589 -0.1943 -5.2200 41 1 7.2141 -1.9535 -5.7109 42 1 4.7997 -2.0903 -6.4785 43 1 4.5433 -0.3312 -5.9881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797563590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:56 Heat of formation + Delta-G solvation = -28.044836 kcal Electronic energy + Delta-G solvation = -24409.289189 eV Core-core repulsion = 21070.405864 eV Total energy + Delta-G solvation = -3338.883325 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.38957 -38.31006 -36.72529 -35.10007 -33.55908 -32.49912 -32.15243 -30.12906 -26.49059 -25.98231 -25.74161 -25.07562 -21.52154 -21.21989 -20.88445 -19.27698 -18.70273 -17.87280 -16.45012 -16.21695 -16.13433 -15.86048 -14.88120 -14.71741 -14.50536 -13.99165 -13.74913 -13.30377 -13.02460 -12.88260 -12.75720 -12.52507 -11.98537 -11.78473 -11.68971 -11.43135 -11.32326 -11.13470 -11.05884 -10.75682 -10.75331 -10.53942 -10.25960 -10.08710 -9.70951 -9.40141 -9.22349 -8.96992 -8.83654 -8.31188 -8.20046 -7.63070 -6.00534 -4.20936 3.18060 3.27120 3.27796 3.29282 3.95596 4.08251 4.26674 4.64703 4.91601 4.95879 5.04150 5.20416 5.22636 5.34495 5.44074 5.47406 5.63799 5.72763 5.82178 5.86391 5.91020 5.99885 6.03959 6.10589 6.11580 6.23477 6.31272 6.42993 6.54829 6.61587 6.74867 6.88749 7.00091 7.18106 7.25646 7.52308 7.63618 7.77108 7.82479 8.00143 8.30759 8.75255 8.94972 9.42156 9.51626 10.88127 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.007180 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.506251 B = 3898.590998 C = 4757.450014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.123 3.877 3 H 0.095 0.905 4 C 0.063 3.937 5 O -0.390 6.390 6 C 0.072 3.928 7 C -0.171 4.171 8 C 0.110 3.890 9 N -0.632 5.632 10 C 0.701 3.299 11 O -0.606 6.606 12 N -0.700 5.700 13 C 0.182 3.818 14 C 0.036 3.964 15 C -0.497 4.497 16 H 0.059 0.941 17 C 0.076 3.924 18 N -0.863 5.863 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.198 4.198 24 C -0.213 4.213 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.392 0.608 37 H 0.014 0.986 38 H 0.113 0.887 39 H 0.262 0.738 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 0.485 2.864 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.017 3.983 3 H 0.113 0.887 4 C -0.016 4.016 5 O -0.308 6.308 6 C -0.005 4.005 7 C -0.209 4.209 8 C -0.013 4.013 9 N -0.371 5.371 10 C 0.402 3.598 11 O -0.486 6.486 12 N -0.353 5.353 13 C 0.058 3.942 14 C 0.036 3.964 15 C -0.534 4.534 16 H 0.077 0.923 17 C -0.128 4.128 18 N -0.499 5.499 19 Si 0.716 3.284 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.237 4.237 24 C -0.250 4.250 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.228 0.772 37 H 0.032 0.968 38 H 0.131 0.869 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.659 1.156 3.543 11.292 hybrid contribution 0.160 -1.318 -0.421 1.393 sum -10.499 -0.162 3.123 10.955 Atomic orbital electron populations 1.22248 0.94624 1.03219 1.01914 1.21619 0.94215 0.97710 0.84722 0.88719 1.22544 0.97129 0.84327 0.97556 1.86176 1.72285 1.23386 1.48956 1.22183 0.98923 0.91129 0.88238 1.22666 1.00630 1.00170 0.97399 1.21751 0.96323 0.88127 0.95088 1.47144 1.22563 1.37337 1.30043 1.15960 0.80255 0.82906 0.80667 1.90812 1.62014 1.30023 1.65758 1.45011 1.20253 1.37007 1.33024 1.20943 0.83524 0.92132 0.97563 1.19253 0.96505 0.95225 0.85465 1.20446 1.46906 0.89882 0.96202 0.92275 1.24977 0.94661 0.97202 0.95978 1.69880 1.42780 1.31847 1.05348 0.86716 0.78640 0.85460 0.77562 1.20220 1.21221 1.20149 1.22931 0.91258 1.00353 1.09112 1.22953 0.98885 1.00743 1.02455 0.92056 0.92403 0.90457 0.88525 0.93350 0.91947 0.89723 0.90079 0.89558 0.89790 0.92279 0.77199 0.96796 0.86915 0.92742 0.91459 0.90241 0.90699 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.23 37.16 0.31 -1.63 16 2 C 0.12 1.88 2.86 -67.72 -0.19 1.69 16 3 H 0.09 1.60 7.21 -51.93 -0.37 1.22 16 4 C 0.06 0.97 6.36 38.11 0.24 1.21 16 5 O -0.39 -5.89 8.94 -26.51 -0.24 -6.13 16 6 C 0.07 1.05 6.37 36.41 0.23 1.28 16 7 C -0.17 -2.11 5.55 -27.18 -0.15 -2.26 16 8 C 0.11 1.58 5.31 -3.19 -0.02 1.56 16 9 N -0.63 -10.87 2.12 -170.56 -0.36 -11.23 16 10 C 0.70 15.17 8.22 -86.92 -0.71 14.46 16 11 O -0.61 -15.20 15.75 5.29 0.08 -15.11 16 12 N -0.70 -15.26 4.98 -65.23 -0.32 -15.59 16 13 C 0.18 4.36 4.61 -4.05 -0.02 4.34 16 14 C 0.04 0.85 2.02 -155.66 -0.32 0.54 16 15 C -0.50 -12.42 8.45 -34.44 -0.29 -12.71 16 16 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 17 C 0.08 1.92 5.32 -17.82 -0.09 1.83 16 18 N -0.86 -22.72 10.18 55.43 0.56 -22.16 16 19 Si 0.89 19.76 29.54 -169.99 -5.02 14.74 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 C -0.20 -4.32 9.96 -26.69 -0.27 -4.58 16 24 C -0.21 -4.42 9.93 -26.69 -0.26 -4.68 16 25 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.06 0.68 7.63 -51.93 -0.40 0.28 16 27 H 0.08 0.91 4.27 -51.94 -0.22 0.68 16 28 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.06 1.12 7.40 -51.93 -0.38 0.74 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.98 5.17 -51.93 -0.27 0.71 16 34 H 0.08 1.30 5.58 -51.93 -0.29 1.01 16 35 H 0.06 0.74 7.81 -51.93 -0.41 0.33 16 36 H 0.39 8.06 5.49 -40.82 -0.22 7.83 16 37 H 0.01 0.33 8.09 -51.93 -0.42 -0.09 16 38 H 0.11 3.09 5.90 -51.93 -0.31 2.79 16 39 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.08 1.73 8.14 -51.93 -0.42 1.30 16 42 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 329.98 15.07 4.97 4.97 Total: -1.00 -28.49 329.98 -8.51 -37.00 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: -6.64 Total: 12.48 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.55 Total: 1.03 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: -0.12 Total: -48.98 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.15 Total: -21.24 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.49 -8.51 -37.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797563590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.957 kcal (2) G-P(sol) polarization free energy of solvation -28.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds