Wall clock time and date at job start Tue Mar 31 2020 05:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.75460 * 2 1 4 4 C 1.52991 * 109.71887 * 239.36646 * 2 1 3 5 5 N 1.45648 * 110.77453 * 287.05114 * 4 2 1 6 6 C 1.46505 * 117.70190 * 158.09823 * 5 4 2 7 7 C 1.33373 * 124.59103 * 338.07651 * 5 4 2 8 8 O 1.21280 * 118.49277 * 184.34367 * 7 5 4 9 9 C 1.50083 * 123.00608 * 4.16432 * 7 5 4 10 10 N 1.47043 * 109.08627 * 347.59209 * 9 7 5 11 11 C 1.34777 * 121.35208 * 222.69101 * 10 9 7 12 12 O 1.21283 * 120.00391 * 179.71920 * 11 10 9 13 13 C 1.50706 * 120.00110 * 359.71099 * 11 10 9 14 14 C 1.52998 * 109.47348 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46929 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46929 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 H 1.09003 * 109.46706 * 299.36340 * 1 2 3 26 26 H 1.09001 * 109.47475 * 59.36401 * 1 2 3 27 27 H 1.09003 * 109.47225 * 179.36637 * 1 2 3 28 28 H 1.09004 * 109.21531 * 47.38486 * 4 2 1 29 29 H 1.09000 * 109.21817 * 166.71355 * 4 2 1 30 30 H 1.08998 * 109.46725 * 90.00608 * 6 5 4 31 31 H 1.09002 * 109.46421 * 209.99940 * 6 5 4 32 32 H 1.08994 * 109.47490 * 329.99797 * 6 5 4 33 33 H 1.08997 * 109.52966 * 227.66616 * 9 7 5 34 34 H 1.08998 * 109.40864 * 107.43565 * 9 7 5 35 35 H 1.09004 * 109.47058 * 59.99967 * 13 11 10 36 36 H 1.09006 * 109.46863 * 300.00634 * 13 11 10 37 37 H 1.09000 * 109.46986 * 59.99910 * 14 13 11 38 38 H 1.09002 * 109.46857 * 299.99776 * 14 13 11 39 39 H 1.09000 * 109.47441 * 60.00090 * 15 14 13 40 40 H 1.09002 * 109.47087 * 299.99536 * 15 14 13 41 41 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 42 42 H 1.09006 * 109.47297 * 299.99829 * 16 15 14 43 43 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0462 -0.7338 -1.2392 5 7 1.8446 -2.1705 -1.1102 6 6 1.8124 -2.9669 -2.3395 7 6 1.6877 -2.8121 0.0485 8 8 1.6070 -4.0221 0.0336 9 6 1.6103 -2.1054 1.3703 10 7 2.0269 -0.7065 1.1927 11 6 2.8354 -0.0972 2.0825 12 8 3.1679 1.0562 1.9093 13 6 3.3262 -0.8491 3.2929 14 6 4.2197 0.0651 4.1336 15 6 4.7184 -0.6986 5.3620 16 6 5.6124 0.2154 6.2023 17 6 6.1032 -0.5365 7.4127 18 1 5.8066 -1.5635 7.5673 19 6 6.9306 0.0866 8.3226 20 7 7.2913 1.3372 8.1346 21 14 7.5383 -0.8453 9.8232 22 1 8.4072 0.0414 10.6382 23 1 6.3765 -1.2847 10.6371 24 1 8.3150 -2.0335 9.3870 25 1 -0.3633 0.5039 0.8957 26 1 -0.3634 0.5237 -0.8842 27 1 -0.3634 -1.0276 -0.0114 28 1 1.5112 -0.3740 -2.1181 29 1 3.1102 -0.5302 -1.3595 30 1 2.8209 -3.3015 -2.5821 31 1 1.1672 -3.8333 -2.1942 32 1 1.4249 -2.3584 -3.1566 33 1 2.2717 -2.5955 2.0848 34 1 0.5848 -2.1370 1.7384 35 1 3.8968 -1.7208 2.9724 36 1 2.4735 -1.1725 3.8901 37 1 3.6487 0.9365 4.4540 38 1 5.0723 0.3887 3.5366 39 1 5.2895 -1.5698 5.0412 40 1 3.8660 -1.0226 5.9591 41 1 5.0418 1.0869 6.5233 42 1 6.4648 0.5391 5.6050 43 1 6.9755 1.8212 7.3556 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807327869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:31 Heat of formation + Delta-G solvation = -85.079811 kcal Electronic energy + Delta-G solvation = -22316.682430 eV Core-core repulsion = 18975.325883 eV Total energy + Delta-G solvation = -3341.356547 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.34302 -39.53723 -37.20484 -35.34908 -35.12322 -33.01593 -32.16447 -29.57506 -28.92288 -27.82778 -25.78606 -25.42696 -23.13470 -21.96064 -20.52269 -20.13962 -18.28924 -17.71498 -17.50192 -16.70134 -16.57716 -16.17876 -15.88112 -15.50203 -14.54638 -14.38715 -14.16399 -13.69053 -13.66637 -13.49907 -13.27951 -12.98860 -12.76859 -12.53314 -12.49238 -12.36644 -12.24150 -11.96602 -11.54858 -11.10724 -10.96470 -10.73654 -10.64919 -10.58773 -10.08710 -9.93717 -9.75528 -9.56183 -9.27097 -9.03619 -8.46242 -8.26769 -6.30214 -3.98857 2.11615 2.28844 2.46208 2.68605 3.46875 3.49262 3.67960 3.93496 4.05239 4.35491 4.49947 4.58854 4.62566 4.77941 4.84721 4.86802 4.98574 5.01509 5.13494 5.15553 5.22728 5.26965 5.39998 5.42141 5.47156 5.65199 5.70024 5.77600 6.00408 6.02048 6.16861 6.40833 6.69026 6.83355 6.90188 6.96044 7.04755 7.49521 7.62443 7.63915 7.96111 8.28866 8.52874 8.95077 9.73856 11.10598 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030997 B = 0.002852 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.091157 B = 9814.625795 C =10331.740056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 H 0.121 0.879 4 C 0.104 3.896 5 N -0.603 5.603 6 C 0.076 3.924 7 C 0.510 3.490 8 O -0.543 6.543 9 C 0.097 3.903 10 N -0.622 5.622 11 C 0.523 3.477 12 O -0.526 6.526 13 C -0.140 4.140 14 C -0.104 4.104 15 C -0.104 4.104 16 C 0.007 3.993 17 C -0.602 4.602 18 H 0.048 0.952 19 C 0.012 3.988 20 N -0.915 5.915 21 Si 1.069 2.931 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.288 1.288 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.124 0.876 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.942 -5.575 -22.536 28.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.139 0.861 4 C -0.020 4.020 5 N -0.336 5.336 6 C -0.066 4.066 7 C 0.297 3.703 8 O -0.420 6.420 9 C -0.029 4.029 10 N -0.360 5.360 11 C 0.313 3.687 12 O -0.401 6.401 13 C -0.180 4.180 14 C -0.142 4.142 15 C -0.141 4.141 16 C -0.030 4.030 17 C -0.641 4.641 18 H 0.066 0.934 19 C -0.191 4.191 20 N -0.551 5.551 21 Si 0.897 3.103 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.215 1.215 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.844 -5.413 -21.234 26.468 hybrid contribution -1.026 -0.201 -1.544 1.865 sum -15.870 -5.614 -22.779 28.323 Atomic orbital electron populations 1.22115 0.93903 1.02557 1.03299 1.21540 0.94934 0.98471 0.83371 0.86127 1.21888 1.02014 0.79192 0.98864 1.47129 1.71312 1.08230 1.06940 1.21770 1.02658 0.96772 0.85416 1.20190 0.76333 0.87872 0.85890 1.90773 1.50511 1.13710 1.86997 1.21820 1.04096 0.81419 0.95557 1.48415 1.50460 1.12243 1.24878 1.21110 0.76644 0.87218 0.83692 1.90709 1.56232 1.17405 1.75764 1.21866 1.01746 1.00310 0.94084 1.21478 0.98392 0.97788 0.96515 1.21522 0.99324 0.98788 0.94504 1.19220 0.94038 0.94989 0.94740 1.22089 1.33170 1.00010 1.08783 0.93399 1.25860 0.94666 0.96689 1.01893 1.70771 1.44121 1.09829 1.30392 0.83553 0.76329 0.74978 0.75431 1.20798 1.21480 1.21488 0.91367 0.90849 0.92399 0.89206 0.90935 0.92397 0.90168 0.91060 0.85782 0.87644 0.88914 0.88749 0.91730 0.91803 0.93246 0.93209 0.97499 0.97515 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.04 37.16 0.34 -0.63 16 2 C 0.12 0.94 3.27 -67.52 -0.22 0.72 16 3 H 0.12 1.07 7.06 -51.93 -0.37 0.70 16 4 C 0.10 0.67 5.94 -4.51 -0.03 0.64 16 5 N -0.60 -4.90 3.10 -182.93 -0.57 -5.47 16 6 C 0.08 0.50 10.19 59.85 0.61 1.11 16 7 C 0.51 5.22 7.02 -11.91 -0.08 5.14 16 8 O -0.54 -7.36 16.25 5.56 0.09 -7.27 16 9 C 0.10 0.84 5.59 -5.20 -0.03 0.81 16 10 N -0.62 -6.11 2.76 -166.82 -0.46 -6.57 16 11 C 0.52 6.86 7.72 -10.98 -0.08 6.77 16 12 O -0.53 -8.79 15.46 5.55 0.09 -8.70 16 13 C -0.14 -1.81 4.15 -27.88 -0.12 -1.93 16 14 C -0.10 -1.81 4.50 -26.73 -0.12 -1.93 16 15 C -0.10 -2.14 5.15 -26.73 -0.14 -2.28 16 16 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 17 C -0.60 -17.67 9.11 -34.44 -0.31 -17.98 16 18 H 0.05 1.37 7.74 -52.48 -0.41 0.96 16 19 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 20 N -0.91 -28.91 13.65 55.43 0.76 -28.16 16 21 Si 1.07 25.85 29.90 -169.99 -5.08 20.77 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.36 6.83 -51.93 -0.35 0.01 16 28 H 0.09 0.34 7.79 -51.93 -0.40 -0.07 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.62 7.23 -51.93 -0.38 0.24 16 32 H 0.07 0.27 7.80 -51.93 -0.41 -0.13 16 33 H 0.12 1.02 6.26 -51.93 -0.33 0.70 16 34 H 0.11 0.73 7.85 -51.93 -0.41 0.32 16 35 H 0.09 1.07 7.56 -51.93 -0.39 0.68 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 38 H 0.06 1.19 8.10 -51.93 -0.42 0.76 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.01 0.19 8.01 -51.93 -0.42 -0.23 16 42 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 43 H 0.27 8.49 7.22 -40.82 -0.29 8.20 16 LS Contribution 346.43 15.07 5.22 5.22 Total: -1.00 -36.34 346.43 -7.52 -43.86 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -7.16 Total: -4.44 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -0.40 Total: -9.23 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: -0.27 Total: -40.20 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.18 Total: -15.97 kcal Atomic # 14 Polarization: 25.85 SS G_CDS: -5.08 Total: 20.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.34 -7.52 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807327869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.220 kcal (2) G-P(sol) polarization free energy of solvation -36.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds