Wall clock time and date at job start Tue Mar 31 2020 05:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.75113 * 2 1 4 4 C 1.53462 * 109.83562 * 120.86950 * 2 1 3 5 5 N 1.45659 * 110.73638 * 166.50243 * 4 2 1 6 6 C 1.46497 * 117.70237 * 157.95416 * 5 4 2 7 7 C 1.33377 * 124.58590 * 337.98543 * 5 4 2 8 8 O 1.21290 * 118.48513 * 184.33546 * 7 5 4 9 9 C 1.50435 * 123.02753 * 4.31196 * 7 5 4 10 10 N 1.47047 * 108.88886 * 347.29863 * 9 7 5 11 11 C 1.34777 * 121.35206 * 222.71704 * 10 9 7 12 12 O 1.21283 * 120.00391 * 180.02562 * 11 10 9 13 13 C 1.50706 * 120.00110 * 359.97438 * 11 10 9 14 14 C 1.52998 * 109.47348 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46929 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46929 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 H 1.09002 * 109.46471 * 180.63280 * 1 2 3 26 26 H 1.08994 * 109.47147 * 300.63319 * 1 2 3 27 27 H 1.08999 * 109.46757 * 60.63357 * 1 2 3 28 28 H 1.08999 * 109.33760 * 46.12348 * 4 2 1 29 29 H 1.08998 * 109.14054 * 286.76162 * 4 2 1 30 30 H 1.09001 * 109.46764 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47657 * 300.02250 * 6 5 4 32 32 H 1.09002 * 109.47175 * 60.02999 * 6 5 4 33 33 H 1.08995 * 109.57034 * 227.46778 * 9 7 5 34 34 H 1.09002 * 109.56747 * 107.11731 * 9 7 5 35 35 H 1.09004 * 109.47058 * 59.99967 * 13 11 10 36 36 H 1.09006 * 109.46863 * 300.00634 * 13 11 10 37 37 H 1.09000 * 109.46986 * 59.99910 * 14 13 11 38 38 H 1.09002 * 109.46857 * 299.99776 * 14 13 11 39 39 H 1.09000 * 109.47441 * 60.00090 * 15 14 13 40 40 H 1.09002 * 109.47087 * 299.99536 * 15 14 13 41 41 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 42 42 H 1.09006 * 109.47297 * 299.99829 * 16 15 14 43 43 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0508 -0.7407 1.2391 5 7 3.4718 -1.0319 1.1066 6 6 4.2353 -1.2714 2.3337 7 6 4.1267 -1.0952 -0.0536 8 8 5.2940 -1.4247 -0.0418 9 6 3.4843 -0.7773 -1.3762 10 7 2.0270 -0.7064 -1.1928 11 6 1.1804 -1.2606 -2.0830 12 8 -0.0175 -1.1872 -1.9078 13 6 1.7221 -1.9706 -3.2970 14 6 0.5597 -2.5029 -4.1375 15 6 1.1098 -3.2243 -5.3695 16 6 -0.0525 -3.7572 -6.2097 17 6 0.4892 -4.4672 -7.4237 18 1 1.5558 -4.5315 -7.5804 19 6 -0.3769 -5.0346 -8.3341 20 7 -1.6758 -4.9558 -8.1435 21 14 0.2946 -5.9140 -9.8391 22 1 -0.8335 -6.4324 -10.6539 23 1 1.0966 -4.9638 -10.6509 24 1 1.1545 -7.0457 -9.4086 25 1 -0.3632 -1.0277 0.0114 26 1 -0.3633 0.5236 0.8842 27 1 -0.3633 0.5040 -0.8956 28 1 1.5027 -1.6753 1.3577 29 1 1.8928 -0.1186 2.1200 30 1 5.2759 -1.4741 2.0804 31 1 4.1821 -0.3899 2.9727 32 1 3.8161 -2.1283 2.8611 33 1 3.7241 -1.5598 -2.0961 34 1 3.8534 0.1816 -1.7403 35 1 2.3526 -2.8016 -2.9806 36 1 2.3116 -1.2736 -3.8927 37 1 -0.0704 -1.6717 -4.4538 38 1 -0.0299 -3.1999 -3.5420 39 1 1.7397 -4.0556 -5.0528 40 1 1.6997 -2.5277 -5.9652 41 1 -0.6829 -2.9262 -6.5265 42 1 -0.6422 -4.4539 -5.6138 43 1 -2.0244 -4.4988 -7.3621 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807327873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:33 Heat of formation + Delta-G solvation = -71.340113 kcal Electronic energy + Delta-G solvation = -22374.216411 eV Core-core repulsion = 19033.455662 eV Total energy + Delta-G solvation = -3340.760749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.32951 -39.69436 -36.99769 -35.29775 -35.16279 -33.22050 -32.27441 -29.60583 -28.88499 -27.14068 -25.83329 -25.36753 -23.26940 -21.94184 -20.39455 -20.19595 -18.76962 -17.82132 -17.10222 -16.61932 -16.48621 -16.11603 -15.93917 -15.76373 -14.76004 -14.29702 -13.84981 -13.70725 -13.65134 -13.34212 -12.98107 -12.85491 -12.78086 -12.64557 -12.48940 -12.30941 -12.29142 -11.87532 -11.70339 -11.10896 -10.96044 -10.64680 -10.60606 -10.58767 -10.08865 -9.75787 -9.69050 -9.28249 -9.22445 -8.96766 -8.46432 -8.27105 -6.30557 -3.99211 2.10098 2.29536 2.46867 2.67392 3.46651 3.49001 3.67705 3.86981 4.13395 4.35749 4.54841 4.59205 4.67908 4.79317 4.88134 4.94201 4.99597 5.04023 5.16127 5.22692 5.27771 5.37797 5.43996 5.46812 5.68679 5.71884 5.80674 5.97395 6.00524 6.15538 6.30235 6.40823 6.68907 6.83341 6.88809 6.98004 7.04905 7.49116 7.62076 7.62813 7.99969 8.28560 8.52531 8.94759 9.73483 11.10256 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.002943 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.977106 B = 9512.641000 C =10229.579909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.130 3.870 3 H 0.082 0.918 4 C 0.101 3.899 5 N -0.605 5.605 6 C 0.067 3.933 7 C 0.510 3.490 8 O -0.544 6.544 9 C 0.099 3.901 10 N -0.625 5.625 11 C 0.522 3.478 12 O -0.518 6.518 13 C -0.143 4.143 14 C -0.103 4.103 15 C -0.104 4.104 16 C 0.007 3.993 17 C -0.602 4.602 18 H 0.048 0.952 19 C 0.012 3.988 20 N -0.915 5.915 21 Si 1.069 2.931 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.288 1.288 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.125 0.875 34 H 0.107 0.893 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.007 0.993 42 H 0.006 0.994 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.841 12.402 22.310 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.026 3.974 3 H 0.100 0.900 4 C -0.023 4.023 5 N -0.338 5.338 6 C -0.075 4.075 7 C 0.297 3.703 8 O -0.421 6.421 9 C -0.027 4.027 10 N -0.363 5.363 11 C 0.312 3.688 12 O -0.393 6.393 13 C -0.182 4.182 14 C -0.141 4.141 15 C -0.142 4.142 16 C -0.030 4.030 17 C -0.641 4.641 18 H 0.066 0.934 19 C -0.191 4.191 20 N -0.551 5.551 21 Si 0.897 3.103 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.215 1.215 25 H 0.098 0.902 26 H 0.067 0.933 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.025 0.975 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.324 11.426 21.013 25.672 hybrid contribution 0.606 0.921 1.566 1.916 sum 9.930 12.347 22.580 27.584 Atomic orbital electron populations 1.22143 0.90706 1.04503 1.01918 1.21722 0.97299 0.95232 0.83105 0.89975 1.22045 0.80009 1.01129 0.99071 1.47127 1.09895 1.69771 1.06995 1.21838 0.98979 1.01090 0.85627 1.20335 0.86922 0.77099 0.85957 1.90759 1.16783 1.47720 1.86866 1.21906 0.79887 1.05484 0.95452 1.48392 1.05840 1.57264 1.24782 1.21047 0.86404 0.77632 0.83678 1.90759 1.15199 1.58044 1.75347 1.21902 1.01443 1.00662 0.94240 1.21465 0.95663 1.00481 0.96463 1.21522 0.99774 0.98355 0.94504 1.19217 0.93561 0.95446 0.94741 1.22090 0.94592 1.38796 1.08581 0.93407 1.25858 0.94685 0.96615 1.01942 1.70772 1.12637 1.41444 1.30259 0.83554 0.75199 0.76122 0.75427 1.20795 1.21478 1.21487 0.90218 0.93253 0.90247 0.90859 0.89366 0.88847 0.91962 0.91995 0.85691 0.87554 0.89044 0.88872 0.91739 0.91821 0.93279 0.93237 0.97509 0.97527 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.59 37.16 0.28 -0.95 16 2 C 0.13 1.03 3.57 -67.27 -0.24 0.79 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.10 0.68 5.95 -4.26 -0.03 0.65 16 5 N -0.61 -5.09 3.20 -182.48 -0.58 -5.67 16 6 C 0.07 0.45 10.43 59.85 0.62 1.08 16 7 C 0.51 5.26 7.58 -11.74 -0.09 5.17 16 8 O -0.54 -7.37 15.97 5.55 0.09 -7.28 16 9 C 0.10 0.84 6.40 -5.02 -0.03 0.81 16 10 N -0.62 -6.08 2.97 -166.33 -0.49 -6.58 16 11 C 0.52 6.61 7.65 -10.98 -0.08 6.53 16 12 O -0.52 -8.02 11.52 5.55 0.06 -7.95 16 13 C -0.14 -1.81 4.14 -27.88 -0.12 -1.93 16 14 C -0.10 -1.77 4.50 -26.73 -0.12 -1.89 16 15 C -0.10 -2.14 5.15 -26.73 -0.14 -2.27 16 16 C 0.01 0.19 4.28 -27.88 -0.12 0.07 16 17 C -0.60 -17.64 9.11 -34.44 -0.31 -17.95 16 18 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 19 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 20 N -0.91 -28.86 13.65 55.43 0.76 -28.10 16 21 Si 1.07 25.82 29.90 -169.99 -5.08 20.73 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.08 0.90 6.70 -51.93 -0.35 0.55 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.08 0.89 6.88 -51.93 -0.36 0.54 16 28 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.09 0.38 8.07 -51.93 -0.42 -0.04 16 30 H 0.09 0.79 6.59 -51.93 -0.34 0.45 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.13 1.01 6.27 -51.93 -0.33 0.69 16 34 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.05 7.57 -51.93 -0.39 0.66 16 36 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 37 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 38 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.01 0.18 8.01 -51.93 -0.42 -0.23 16 42 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 43 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -35.49 342.83 -7.71 -43.20 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -7.16 Total: -3.90 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.47 Total: -9.61 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.32 Total: -40.35 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: 0.15 Total: -15.24 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.49 -7.71 -43.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807327873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.141 kcal (2) G-P(sol) polarization free energy of solvation -35.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds