Wall clock time and date at job start Tue Mar 31 2020 05:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08997 * 109.75113 * 2 1 4 4 C 1.53462 * 109.83562 * 120.86950 * 2 1 3 5 5 N 1.45659 * 110.73638 * 166.50243 * 4 2 1 6 6 C 1.46497 * 117.70237 * 157.95416 * 5 4 2 7 7 C 1.33377 * 124.58590 * 337.98543 * 5 4 2 8 8 O 1.21290 * 118.48513 * 184.33546 * 7 5 4 9 9 C 1.50435 * 123.02753 * 4.31196 * 7 5 4 10 10 N 1.47047 * 108.88886 * 347.29863 * 9 7 5 11 11 C 1.34777 * 121.35206 * 222.71704 * 10 9 7 12 12 O 1.21283 * 120.00391 * 180.02562 * 11 10 9 13 13 C 1.50706 * 120.00110 * 359.97438 * 11 10 9 14 14 C 1.52998 * 109.47348 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.46929 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46929 * 179.97438 * 15 14 13 17 17 C 1.50706 * 109.47348 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99758 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00102 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00217 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47057 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47389 * 300.00068 * 21 19 17 24 24 H 1.48504 * 109.47102 * 60.00417 * 21 19 17 25 25 H 1.09002 * 109.46471 * 180.63280 * 1 2 3 26 26 H 1.08994 * 109.47147 * 300.63319 * 1 2 3 27 27 H 1.08999 * 109.46757 * 60.63357 * 1 2 3 28 28 H 1.08999 * 109.33760 * 46.12348 * 4 2 1 29 29 H 1.08998 * 109.14054 * 286.76162 * 4 2 1 30 30 H 1.09001 * 109.46764 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47657 * 300.02250 * 6 5 4 32 32 H 1.09002 * 109.47175 * 60.02999 * 6 5 4 33 33 H 1.08995 * 109.57034 * 227.46778 * 9 7 5 34 34 H 1.09002 * 109.56747 * 107.11731 * 9 7 5 35 35 H 1.09004 * 109.47058 * 59.99967 * 13 11 10 36 36 H 1.09006 * 109.46863 * 300.00634 * 13 11 10 37 37 H 1.09000 * 109.46986 * 59.99910 * 14 13 11 38 38 H 1.09002 * 109.46857 * 299.99776 * 14 13 11 39 39 H 1.09000 * 109.47441 * 60.00090 * 15 14 13 40 40 H 1.09002 * 109.47087 * 299.99536 * 15 14 13 41 41 H 1.09001 * 109.47671 * 60.00109 * 16 15 14 42 42 H 1.09006 * 109.47297 * 299.99829 * 16 15 14 43 43 H 0.97001 * 119.99646 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0258 0.0000 4 6 2.0508 -0.7407 1.2391 5 7 3.4718 -1.0319 1.1066 6 6 4.2353 -1.2714 2.3337 7 6 4.1267 -1.0952 -0.0536 8 8 5.2940 -1.4247 -0.0418 9 6 3.4843 -0.7773 -1.3762 10 7 2.0270 -0.7064 -1.1928 11 6 1.1804 -1.2606 -2.0830 12 8 -0.0175 -1.1872 -1.9078 13 6 1.7221 -1.9706 -3.2970 14 6 0.5597 -2.5029 -4.1375 15 6 1.1098 -3.2243 -5.3695 16 6 -0.0525 -3.7572 -6.2097 17 6 0.4892 -4.4672 -7.4237 18 1 1.5558 -4.5315 -7.5804 19 6 -0.3769 -5.0346 -8.3341 20 7 -1.6758 -4.9558 -8.1435 21 14 0.2946 -5.9140 -9.8391 22 1 -0.8335 -6.4324 -10.6539 23 1 1.0966 -4.9638 -10.6509 24 1 1.1545 -7.0457 -9.4086 25 1 -0.3632 -1.0277 0.0114 26 1 -0.3633 0.5236 0.8842 27 1 -0.3633 0.5040 -0.8956 28 1 1.5027 -1.6753 1.3577 29 1 1.8928 -0.1186 2.1200 30 1 5.2759 -1.4741 2.0804 31 1 4.1821 -0.3899 2.9727 32 1 3.8161 -2.1283 2.8611 33 1 3.7241 -1.5598 -2.0961 34 1 3.8534 0.1816 -1.7403 35 1 2.3526 -2.8016 -2.9806 36 1 2.3116 -1.2736 -3.8927 37 1 -0.0704 -1.6717 -4.4538 38 1 -0.0299 -3.1999 -3.5420 39 1 1.7397 -4.0556 -5.0528 40 1 1.6997 -2.5277 -5.9652 41 1 -0.6829 -2.9262 -6.5265 42 1 -0.6422 -4.4539 -5.6138 43 1 -2.0244 -4.4988 -7.3621 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807327873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:33 Heat of formation + Delta-G solvation = -94.766092 kcal Electronic energy + Delta-G solvation = -22375.232238 eV Core-core repulsion = 19033.455662 eV Total energy + Delta-G solvation = -3341.776576 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.11176 -40.59106 -37.85797 -36.87208 -36.03716 -34.91595 -33.37826 -31.11431 -29.70177 -27.87496 -27.05819 -26.44969 -24.74449 -23.26719 -21.89225 -21.17620 -19.56262 -18.88686 -18.52880 -17.89990 -17.24994 -16.92914 -16.87491 -16.54709 -15.94851 -15.65513 -15.35712 -14.95841 -14.74954 -14.51451 -14.17027 -13.98270 -13.72240 -13.54740 -13.47725 -13.32209 -13.06633 -12.89610 -12.68639 -12.52331 -12.42009 -12.27655 -12.19623 -11.95046 -11.60967 -11.48951 -11.43246 -10.65620 -10.54352 -10.19568 -9.94339 -9.73796 -8.69391 -6.39916 1.35111 1.49861 1.52511 1.59365 1.61877 1.80976 1.97802 2.57935 3.15878 3.20858 3.37042 3.61403 3.89060 3.97104 3.99480 4.06958 4.15775 4.32331 4.39009 4.45772 4.52207 4.53285 4.55697 4.67939 4.69657 4.73222 4.76611 4.92059 5.01600 5.04735 5.08169 5.13918 5.21272 5.32484 5.49754 5.55366 5.56761 6.00864 6.10617 6.19193 6.21656 6.57125 6.90218 7.06941 7.43837 8.71232 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.002943 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.977106 B = 9512.641000 C =10229.579909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.127 3.873 3 H 0.105 0.895 4 C 0.105 3.895 5 N -0.604 5.604 6 C 0.065 3.935 7 C 0.504 3.496 8 O -0.583 6.583 9 C 0.099 3.901 10 N -0.618 5.618 11 C 0.522 3.478 12 O -0.555 6.555 13 C -0.136 4.136 14 C -0.092 4.092 15 C -0.091 4.091 16 C 0.004 3.996 17 C -0.620 4.620 18 H 0.056 0.944 19 C -0.045 4.045 20 N -0.941 5.941 21 Si 1.120 2.880 22 H -0.285 1.285 23 H -0.266 1.266 24 H -0.267 1.267 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.123 0.877 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.119 0.881 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.060 0.940 41 H -0.016 1.016 42 H -0.018 1.018 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.809 13.265 23.174 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.024 3.976 3 H 0.123 0.877 4 C -0.019 4.019 5 N -0.335 5.335 6 C -0.077 4.077 7 C 0.292 3.708 8 O -0.464 6.464 9 C -0.026 4.026 10 N -0.354 5.354 11 C 0.312 3.688 12 O -0.433 6.433 13 C -0.175 4.175 14 C -0.130 4.130 15 C -0.129 4.129 16 C -0.033 4.033 17 C -0.657 4.657 18 H 0.074 0.926 19 C -0.241 4.241 20 N -0.579 5.579 21 Si 0.940 3.060 22 H -0.210 1.210 23 H -0.191 1.191 24 H -0.192 1.192 25 H 0.072 0.928 26 H 0.096 0.904 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.141 0.859 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.002 0.998 42 H 0.000 1.000 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.308 12.320 21.939 27.586 hybrid contribution -0.044 0.684 1.389 1.549 sum 11.264 13.004 23.328 28.986 Atomic orbital electron populations 1.21959 0.91648 1.02847 1.01981 1.21913 0.96514 0.96375 0.82762 0.87710 1.22115 0.78758 1.01350 0.99632 1.47266 1.10559 1.68638 1.07082 1.21944 0.97672 1.02799 0.85295 1.20596 0.86548 0.76721 0.86886 1.90748 1.18436 1.49777 1.87437 1.22050 0.78668 1.07050 0.94860 1.48339 1.06161 1.56286 1.24653 1.20934 0.86103 0.77693 0.84067 1.90774 1.16700 1.59572 1.76255 1.21780 0.99688 1.01874 0.94175 1.21223 0.97013 0.99263 0.95533 1.21349 0.97521 0.98968 0.95048 1.19218 0.95139 0.94102 0.94840 1.22569 0.95134 1.38630 1.09408 0.92618 1.27573 0.94279 0.97011 1.05270 1.70918 1.13976 1.42846 1.30111 0.82916 0.75072 0.76036 0.71934 1.21007 1.19086 1.19218 0.92826 0.90440 0.92758 0.91554 0.85927 0.90868 0.89396 0.90935 0.85145 0.85079 0.87299 0.86333 0.93214 0.93632 0.92496 0.92120 0.99788 0.99976 0.93733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.59 71.99 0.55 -1.61 16 2 C 0.13 1.70 3.57 45.00 0.16 1.86 16 3 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.10 1.10 5.95 86.69 0.52 1.61 16 5 N -0.60 -8.69 3.20 -850.40 -2.72 -11.41 16 6 C 0.06 0.73 10.43 127.77 1.33 2.06 16 7 C 0.50 9.46 7.58 87.79 0.67 10.13 16 8 O -0.58 -15.25 15.97 -3.06 -0.05 -15.30 16 9 C 0.10 1.43 6.40 85.45 0.55 1.98 16 10 N -0.62 -10.79 2.97 -798.53 -2.37 -13.17 16 11 C 0.52 12.71 7.65 87.66 0.67 13.38 16 12 O -0.55 -17.42 11.52 -3.04 -0.04 -17.45 16 13 C -0.14 -3.23 4.14 29.85 0.12 -3.11 16 14 C -0.09 -3.19 4.50 30.59 0.14 -3.05 16 15 C -0.09 -3.73 5.15 30.59 0.16 -3.57 16 16 C 0.00 0.22 4.28 29.85 0.13 0.35 16 17 C -0.62 -36.52 9.11 25.60 0.23 -36.28 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C -0.04 -2.68 5.46 84.65 0.46 -2.22 16 20 N -0.94 -60.80 13.65 21.45 0.29 -60.51 16 21 Si 1.12 51.22 29.90 68.60 2.05 53.28 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 25 H 0.05 1.20 6.70 -2.39 -0.02 1.19 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 1.21 6.88 -2.39 -0.02 1.20 16 28 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 29 H 0.12 0.51 8.07 -2.39 -0.02 0.49 16 30 H 0.07 1.17 6.59 -2.39 -0.02 1.16 16 31 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.13 1.78 6.27 -2.39 -0.01 1.76 16 34 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 2.25 7.57 -2.38 -0.02 2.23 16 36 H 0.12 2.25 8.13 -2.38 -0.02 2.23 16 37 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 38 H 0.04 1.72 8.10 -2.39 -0.02 1.70 16 39 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 41 H -0.02 -0.94 8.01 -2.39 -0.02 -0.96 16 42 H -0.02 -1.06 8.01 -2.38 -0.02 -1.08 16 43 H 0.25 16.69 7.22 -92.71 -0.67 16.02 16 Total: -1.00 -79.76 342.83 3.92 -75.84 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 1.08 Total: 7.20 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: 5.68 Total: -18.47 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -4.80 Total: -85.09 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.08 Total: -32.75 kcal Atomic # 14 Polarization: 51.22 SS G_CDS: 2.05 Total: 53.28 kcal Total: -79.76 3.92 -75.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807327873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.926 kcal (2) G-P(sol) polarization free energy of solvation -79.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds