Wall clock time and date at job start Tue Mar 31 2020 06:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50707 * 120.00222 * 2 1 4 4 C 1.53007 * 109.46820 * 294.99943 * 3 2 1 5 5 C 1.52995 * 109.46701 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47028 * 179.97438 * 5 4 3 7 7 H 1.08008 * 119.99862 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00357 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99733 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00300 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46907 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47673 * 119.99546 * 10 8 6 13 13 H 1.48502 * 109.47051 * 240.00263 * 10 8 6 14 14 N 1.28013 * 120.00052 * 179.97438 * 2 1 3 15 15 N 1.40094 * 119.99953 * 0.02562 * 14 2 1 16 16 C 1.34774 * 120.00137 * 180.02562 * 15 14 2 17 17 O 1.21298 * 119.99941 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99910 * 179.97438 * 16 15 14 19 19 H 1.08999 * 109.47838 * 305.01736 * 18 16 15 20 20 C 1.53093 * 109.48065 * 65.05486 * 18 16 15 21 21 C 1.53180 * 109.16207 * 177.59209 * 20 18 16 22 22 C 1.53180 * 109.03380 * 303.01706 * 21 20 18 23 23 C 1.53096 * 109.16300 * 56.98167 * 22 21 20 24 24 O 1.42905 * 109.47570 * 184.99428 * 18 16 15 25 25 H 1.08994 * 109.47317 * 270.00688 * 1 2 3 26 26 H 1.09003 * 109.46857 * 30.00522 * 1 2 3 27 27 H 1.08997 * 109.47171 * 150.00183 * 1 2 3 28 28 H 1.08996 * 109.47147 * 54.99769 * 3 2 1 29 29 H 1.08996 * 109.47119 * 175.00113 * 3 2 1 30 30 H 1.09007 * 109.46707 * 299.99963 * 4 3 2 31 31 H 1.08999 * 109.46881 * 59.99714 * 4 3 2 32 32 H 1.08996 * 109.47264 * 299.99824 * 5 4 3 33 33 H 1.08999 * 109.47629 * 60.00243 * 5 4 3 34 34 H 0.97006 * 119.99609 * 180.02562 * 9 8 6 35 35 H 0.97001 * 119.99924 * 359.97438 * 15 14 2 36 36 H 1.09000 * 109.52171 * 297.49820 * 20 18 16 37 37 H 1.09001 * 109.52367 * 57.62138 * 20 18 16 38 38 H 1.08996 * 109.54290 * 62.88145 * 21 20 18 39 39 H 1.08991 * 109.54625 * 183.06245 * 21 20 18 40 40 H 1.09001 * 109.52400 * 297.07495 * 22 21 20 41 41 H 1.09004 * 109.52264 * 176.88591 * 22 21 20 42 42 H 1.09005 * 109.47867 * 182.40583 * 23 22 21 43 43 H 1.09001 * 109.48124 * 62.37304 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9876 2.0516 -1.3074 5 6 2.7521 3.3768 -1.3071 6 6 2.4838 4.1118 -2.5951 7 1 1.8327 3.6773 -3.3393 8 6 3.0686 5.3394 -2.8231 9 7 3.8610 5.8687 -1.9168 10 14 2.7354 6.2507 -4.4193 11 1 1.8177 5.4469 -5.2660 12 1 2.1098 7.5635 -4.1186 13 1 4.0144 6.4659 -5.1427 14 7 2.1470 -1.1086 0.0005 15 7 1.4466 -2.3219 0.0005 16 6 2.1204 -3.4891 0.0015 17 8 3.3334 -3.4891 0.0020 18 6 1.3668 -4.7942 0.0021 19 1 0.6741 -4.8135 0.8435 20 6 0.5849 -4.9328 -1.3067 21 6 -0.1298 -6.2876 -1.3244 22 6 0.9065 -7.4014 -1.1455 23 6 1.6761 -7.1674 0.1571 24 8 2.2908 -5.8779 0.1205 25 1 -0.3633 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.9317 1.9145 0.8418 29 1 3.3288 1.1079 0.0895 30 1 2.3164 1.4421 -2.1492 31 1 0.9193 2.2488 -1.3970 32 1 2.4229 3.9860 -0.4654 33 1 3.8204 3.1801 -1.2174 34 1 4.2722 6.7326 -2.0770 35 1 0.4765 -2.3219 0.0005 36 1 -0.1510 -4.1319 -1.3780 37 1 1.2726 -4.8717 -2.1502 38 1 -0.8534 -6.3287 -0.5104 39 1 -0.6443 -6.4161 -2.2766 40 1 1.6009 -7.3913 -1.9857 41 1 0.4007 -8.3660 -1.1015 42 1 2.4438 -7.9331 0.2683 43 1 0.9872 -7.2179 1.0003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841641652.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:04 Heat of formation + Delta-G solvation = -67.471018 kcal Electronic energy + Delta-G solvation = -21597.799211 eV Core-core repulsion = 18257.206238 eV Total energy + Delta-G solvation = -3340.592973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49401 -38.87411 -37.43000 -34.74057 -34.10768 -33.05338 -32.03814 -30.92690 -28.59682 -27.38335 -25.92536 -24.37412 -23.63392 -21.23038 -20.65463 -20.32941 -19.51429 -17.69678 -16.83109 -16.29061 -16.06954 -15.99662 -15.48302 -14.93753 -14.84195 -14.52976 -14.34665 -13.90774 -13.83572 -13.60234 -13.15578 -13.13787 -12.41828 -12.09027 -11.95731 -11.81037 -11.72046 -11.54681 -11.52157 -11.33898 -10.92268 -10.83830 -10.68885 -10.52861 -10.04965 -9.99312 -9.77404 -9.67442 -9.36886 -9.09868 -8.61396 -8.33495 -5.98512 -4.00744 1.88185 2.21023 2.77644 3.32106 3.39717 3.43362 3.53393 4.13259 4.27343 4.32555 4.46801 4.47011 4.56126 4.63010 4.68769 4.91082 4.94752 5.07192 5.09160 5.19361 5.29322 5.33472 5.37557 5.42166 5.53679 5.55626 5.78253 5.83287 5.84553 5.98526 6.03276 6.43484 6.66323 6.68215 6.83002 7.05328 7.10872 7.61865 7.69264 7.83517 8.01668 8.42187 8.43750 9.06470 9.63275 11.12828 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031574 B = 0.002487 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.582731 B =11256.820935 C =11463.899225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.118 3.882 3 C -0.066 4.066 4 C -0.102 4.102 5 C 0.020 3.980 6 C -0.520 4.520 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.248 5.248 15 N -0.589 5.589 16 C 0.533 3.467 17 O -0.484 6.484 18 C 0.083 3.917 19 H 0.085 0.915 20 C -0.149 4.149 21 C -0.120 4.120 22 C -0.160 4.160 23 C 0.059 3.941 24 O -0.352 6.352 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.380 0.620 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.962 -24.845 5.274 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.075 4.075 3 C -0.106 4.106 4 C -0.141 4.141 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.052 5.052 15 N -0.333 5.333 16 C 0.317 3.683 17 O -0.353 6.353 18 C 0.020 3.980 19 H 0.103 0.897 20 C -0.187 4.187 21 C -0.158 4.158 22 C -0.198 4.198 23 C -0.017 4.017 24 O -0.270 6.270 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.219 0.781 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.897 -25.273 5.326 28.033 hybrid contribution -1.838 0.715 -0.919 2.175 sum -12.735 -24.558 4.407 28.013 Atomic orbital electron populations 1.21412 0.93237 1.04106 1.03399 1.25524 0.94481 0.94360 0.93181 1.20719 1.00129 0.88605 1.01139 1.21635 1.00644 0.98369 0.93477 1.19115 0.95486 0.89950 0.97141 1.21275 1.28364 1.03272 1.02877 0.92684 1.25026 0.95219 0.97602 0.96677 1.69976 1.31376 1.17877 1.34175 0.86555 0.78050 0.79690 0.83807 1.19798 1.21047 1.21022 1.74727 1.23906 0.90765 1.15822 1.46869 1.08241 1.03496 1.74704 1.19953 0.88292 0.83087 0.76957 1.90751 1.13492 1.86530 1.44545 1.21784 0.90961 0.86460 0.98812 0.89719 1.22186 0.99905 0.98912 0.97659 1.21584 0.97657 0.93636 1.02892 1.22237 0.98881 0.99198 0.99449 1.22695 0.97878 0.84805 0.96355 1.88085 1.31463 1.13187 1.94266 0.89918 0.88724 0.92133 0.89617 0.89966 0.93083 0.92974 0.96353 0.96298 0.93057 0.78059 0.90292 0.89937 0.91435 0.90728 0.90632 0.90496 0.88121 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.46 36.00 0.34 -1.31 16 2 C 0.12 1.70 6.55 -78.91 -0.52 1.18 16 3 C -0.07 -1.09 5.60 -27.88 -0.16 -1.24 16 4 C -0.10 -2.00 5.03 -26.73 -0.13 -2.14 16 5 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 6 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 7 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 8 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 9 N -0.89 -26.87 13.29 55.43 0.74 -26.13 16 10 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 14 N -0.25 -4.08 10.93 35.60 0.39 -3.69 16 15 N -0.59 -7.73 6.06 31.22 0.19 -7.54 16 16 C 0.53 7.75 7.30 -10.98 -0.08 7.67 16 17 O -0.48 -9.65 16.84 -14.31 -0.24 -9.89 16 18 C 0.08 0.83 3.05 -27.83 -0.09 0.74 16 19 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 20 C -0.15 -1.13 5.37 -26.59 -0.14 -1.27 16 21 C -0.12 -0.66 6.03 -26.54 -0.16 -0.82 16 22 C -0.16 -0.93 6.14 -26.59 -0.16 -1.10 16 23 C 0.06 0.43 6.84 37.21 0.25 0.68 16 24 O -0.35 -4.15 9.94 -55.08 -0.55 -4.70 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.09 0.97 6.91 -51.93 -0.36 0.61 16 27 H 0.06 0.50 6.31 -51.93 -0.33 0.18 16 28 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 30 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 31 H 0.05 0.94 7.01 -51.93 -0.36 0.58 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.38 3.46 6.24 -182.60 -1.14 2.32 16 36 H 0.08 0.46 7.99 -51.93 -0.41 0.05 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 353.29 15.07 5.32 5.32 Total: -1.00 -35.81 353.29 -8.63 -44.44 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -8.06 Total: -3.80 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.39 Total: -10.61 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 1.31 Total: -37.36 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.79 Total: -14.58 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.81 -8.63 -44.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841641652.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.036 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds