Wall clock time and date at job start Tue Mar 31 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50707 * 119.99811 * 2 1 4 4 C 1.53000 * 109.47187 * 295.00273 * 3 2 1 5 5 C 1.53003 * 109.46994 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.46929 * 180.02562 * 5 4 3 7 7 H 1.08001 * 120.00805 * 359.97438 * 6 5 4 8 8 C 1.37887 * 119.99936 * 180.02562 * 6 5 4 9 9 N 1.31507 * 119.99673 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99898 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47298 * 59.99655 * 10 8 6 12 12 H 1.48505 * 109.46894 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47237 * 299.99454 * 10 8 6 14 14 N 1.28008 * 120.00699 * 180.02562 * 2 1 3 15 15 N 1.40101 * 119.99630 * 359.97438 * 14 2 1 16 16 C 1.34773 * 120.00244 * 180.02562 * 15 14 2 17 17 O 1.21303 * 120.00079 * 0.02562 * 16 15 14 18 18 C 1.50700 * 120.00046 * 179.72971 * 16 15 14 19 19 H 1.08996 * 109.48183 * 55.29741 * 18 16 15 20 20 C 1.53094 * 109.48181 * 295.27497 * 18 16 15 21 21 C 1.53180 * 109.16559 * 182.40838 * 20 18 16 22 22 C 1.53176 * 109.03092 * 56.98326 * 21 20 18 23 23 C 1.53086 * 109.16461 * 303.01751 * 22 21 20 24 24 O 1.42903 * 109.47918 * 175.33601 * 18 16 15 25 25 H 1.08997 * 109.47238 * 269.99656 * 1 2 3 26 26 H 1.09003 * 109.47254 * 29.99862 * 1 2 3 27 27 H 1.09002 * 109.46932 * 149.99619 * 1 2 3 28 28 H 1.09000 * 109.46998 * 54.99862 * 3 2 1 29 29 H 1.09003 * 109.46974 * 174.99892 * 3 2 1 30 30 H 1.09000 * 109.46816 * 299.99700 * 4 3 2 31 31 H 1.08993 * 109.47563 * 59.99998 * 4 3 2 32 32 H 1.09008 * 109.46824 * 299.99775 * 5 4 3 33 33 H 1.08993 * 109.47094 * 59.99555 * 5 4 3 34 34 H 0.97006 * 119.99690 * 180.02562 * 9 8 6 35 35 H 0.97001 * 119.99642 * 0.02562 * 15 14 2 36 36 H 1.09001 * 109.52354 * 302.32061 * 20 18 16 37 37 H 1.09001 * 109.51729 * 62.44174 * 20 18 16 38 38 H 1.08996 * 109.54361 * 176.85076 * 21 20 18 39 39 H 1.09000 * 109.54209 * 297.02747 * 21 20 18 40 40 H 1.08997 * 109.52561 * 62.92945 * 22 21 20 41 41 H 1.09004 * 109.51630 * 183.11643 * 22 21 20 42 42 H 1.09005 * 109.48272 * 177.59845 * 23 22 21 43 43 H 1.09003 * 109.48417 * 297.62629 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 1.9874 2.0517 -1.3073 5 6 2.7529 3.3765 -1.3075 6 6 2.4835 4.1120 -2.5949 7 1 1.8319 3.6780 -3.3388 8 6 3.0698 5.3389 -2.8236 9 7 3.8637 5.8673 -1.9181 10 14 2.7364 6.2503 -4.4197 11 1 1.2812 6.5199 -4.5412 12 1 3.4793 7.5362 -4.4199 13 1 3.1834 5.4198 -5.5667 14 7 2.1471 -1.1085 -0.0005 15 7 1.4467 -2.3219 -0.0005 16 6 2.1206 -3.4890 -0.0005 17 8 3.3336 -3.4890 0.0000 18 6 1.3671 -4.7941 0.0057 19 1 0.6753 -4.8184 -0.8362 20 6 0.5835 -4.9251 1.3143 21 6 -0.1311 -6.2798 1.3391 22 6 0.9055 -7.3945 1.1682 23 6 1.6767 -7.1682 -0.1347 24 8 2.2913 -5.8784 -0.1051 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 1.9316 1.9145 0.8418 29 1 3.3287 1.1080 0.0896 30 1 2.3163 1.4423 -2.1491 31 1 0.9192 2.2489 -1.3969 32 1 2.4245 3.9860 -0.4656 33 1 3.8211 3.1789 -1.2182 34 1 4.2759 6.7305 -2.0788 35 1 0.4767 -2.3219 -0.0005 36 1 1.2703 -4.8600 2.1582 37 1 -0.1518 -4.1232 1.3803 38 1 -0.6456 -6.4032 2.2920 39 1 -0.8549 -6.3252 0.5254 40 1 1.5988 -7.3794 2.0092 41 1 0.3997 -8.3593 1.1292 42 1 2.4446 -7.9345 -0.2405 43 1 0.9889 -7.2238 -0.9786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841641654.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:07 Heat of formation + Delta-G solvation = -67.342878 kcal Electronic energy + Delta-G solvation = -21563.512732 eV Core-core repulsion = 18222.925316 eV Total energy + Delta-G solvation = -3340.587416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.49781 -38.87614 -37.42983 -34.74042 -34.11730 -33.05304 -32.04188 -30.92735 -28.59846 -27.38094 -25.93071 -24.38301 -23.63061 -21.23360 -20.66709 -20.32430 -19.51247 -17.69821 -16.83464 -16.27566 -16.07190 -15.99718 -15.52473 -14.94124 -14.84952 -14.51870 -14.21314 -14.11094 -13.75983 -13.63821 -13.15193 -13.12923 -12.40902 -12.07608 -11.99648 -11.79361 -11.73627 -11.54636 -11.53709 -11.33557 -10.93265 -10.79983 -10.69520 -10.56319 -10.04910 -9.99564 -9.77476 -9.66721 -9.36178 -9.12124 -8.61415 -8.32536 -5.97849 -4.00207 1.88192 2.20993 2.77628 3.34710 3.39335 3.41581 3.53161 4.12268 4.25689 4.31098 4.45739 4.47364 4.56372 4.62554 4.68544 4.91364 4.94189 5.06429 5.09033 5.18523 5.27720 5.33302 5.37967 5.40205 5.51057 5.54005 5.76229 5.83361 5.84589 5.98645 6.03388 6.43549 6.66369 6.68371 6.83203 7.05374 7.11118 7.61860 7.69134 7.83898 8.02073 8.42211 8.44139 9.06525 9.63574 11.13401 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039601 B = 0.002396 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.891830 B =11684.925895 C =11839.306532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.118 3.882 3 C -0.066 4.066 4 C -0.103 4.103 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.248 5.248 15 N -0.589 5.589 16 C 0.533 3.467 17 O -0.484 6.484 18 C 0.082 3.918 19 H 0.086 0.914 20 C -0.148 4.148 21 C -0.120 4.120 22 C -0.160 4.160 23 C 0.059 3.941 24 O -0.352 6.352 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.380 0.620 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.950 -24.808 7.573 28.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.075 4.075 3 C -0.106 4.106 4 C -0.142 4.142 5 C -0.016 4.016 6 C -0.560 4.560 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.052 5.052 15 N -0.333 5.333 16 C 0.317 3.683 17 O -0.353 6.353 18 C 0.019 3.981 19 H 0.103 0.897 20 C -0.186 4.186 21 C -0.158 4.158 22 C -0.197 4.197 23 C -0.018 4.018 24 O -0.270 6.270 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.219 0.781 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.878 -25.229 7.604 28.507 hybrid contribution -1.853 0.695 -0.885 2.168 sum -12.732 -24.533 6.719 28.445 Atomic orbital electron populations 1.21413 0.93237 1.04124 1.03385 1.25524 0.94482 0.94362 0.93177 1.20719 1.00128 0.88600 1.01138 1.21636 1.00645 0.98385 0.93485 1.19103 0.95459 0.89928 0.97111 1.21202 1.28454 1.03371 1.02947 0.92786 1.25023 0.95195 0.97582 0.96673 1.69951 1.31159 1.18011 1.34273 0.86666 0.78274 0.79029 0.84066 1.20295 1.21309 1.20264 1.74729 1.23901 0.90762 1.15822 1.46870 1.08241 1.03496 1.74704 1.19948 0.88292 0.83084 0.76957 1.90753 1.13488 1.86530 1.44547 1.21787 0.90987 0.86472 0.98833 0.89668 1.22179 0.99846 0.98906 0.97636 1.21587 0.97682 0.93644 1.02885 1.22233 0.98848 0.99210 0.99448 1.22696 0.97904 0.84812 0.96360 1.88085 1.31433 1.13125 1.94336 0.89925 0.88721 0.92123 0.89621 0.89966 0.93082 0.92968 0.96375 0.96310 0.92941 0.78059 0.90031 0.90303 0.90778 0.91385 0.90671 0.90489 0.88108 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.46 36.00 0.34 -1.31 16 2 C 0.12 1.70 6.55 -78.91 -0.52 1.18 16 3 C -0.07 -1.09 5.60 -27.88 -0.16 -1.24 16 4 C -0.10 -2.01 5.03 -26.73 -0.13 -2.15 16 5 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 6 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 10 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 N -0.25 -4.08 10.93 35.60 0.39 -3.69 16 15 N -0.59 -7.73 6.05 31.22 0.19 -7.54 16 16 C 0.53 7.75 7.30 -10.99 -0.08 7.67 16 17 O -0.48 -9.65 16.84 -14.32 -0.24 -9.89 16 18 C 0.08 0.82 3.05 -27.83 -0.09 0.74 16 19 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 20 C -0.15 -1.06 5.37 -26.59 -0.14 -1.21 16 21 C -0.12 -0.63 6.03 -26.55 -0.16 -0.79 16 22 C -0.16 -0.90 6.14 -26.60 -0.16 -1.06 16 23 C 0.06 0.43 6.84 37.20 0.25 0.68 16 24 O -0.35 -4.16 9.94 -55.09 -0.55 -4.71 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.97 6.91 -51.93 -0.36 0.62 16 27 H 0.06 0.51 6.31 -51.93 -0.33 0.18 16 28 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.05 0.95 7.01 -51.93 -0.36 0.58 16 32 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.38 3.46 6.22 -182.60 -1.13 2.32 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.42 7.97 -51.93 -0.41 0.01 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -35.80 353.25 -8.62 -44.43 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -8.06 Total: -3.88 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.39 Total: -10.52 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 1.31 Total: -37.38 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.79 Total: -14.60 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.80 -8.62 -44.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841641654.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.918 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds