Wall clock time and date at job start Tue Mar 31 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09001 * 109.47185 * 2 1 4 4 C 1.52993 * 109.47469 * 119.99747 * 2 1 3 5 5 C 1.50702 * 109.47654 * 183.57326 * 4 2 1 6 6 H 1.07998 * 119.99766 * 5.09197 * 5 4 2 7 7 C 1.37877 * 119.99907 * 185.08397 * 5 4 2 8 8 N 1.31505 * 120.00405 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99635 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47032 * 89.99880 * 9 7 5 11 11 H 1.48500 * 109.46723 * 210.00390 * 9 7 5 12 12 H 1.48496 * 109.46840 * 329.99897 * 9 7 5 13 13 N 1.46903 * 109.47358 * 240.00290 * 2 1 3 14 14 C 1.46845 * 110.99709 * 308.73968 * 13 2 1 15 15 C 1.53042 * 109.52567 * 185.83929 * 14 13 2 16 16 C 1.53116 * 109.27467 * 300.82632 * 15 14 13 17 17 N 1.46507 * 109.51964 * 177.55680 * 16 15 14 18 18 C 1.47093 * 125.55968 * 119.99898 * 17 16 15 19 19 C 1.54091 * 103.77454 * 180.02562 * 18 17 16 20 20 O 1.45698 * 104.13157 * 359.92619 * 19 18 17 21 21 C 1.34008 * 125.55912 * 300.02270 * 17 16 15 22 22 O 1.21515 * 123.06987 * 0.02622 * 21 17 16 23 23 C 1.53117 * 109.16627 * 57.65285 * 16 15 14 24 24 C 1.46844 * 111.00420 * 72.95125 * 13 2 1 25 25 H 1.09006 * 109.47425 * 60.00545 * 1 2 3 26 26 H 1.09001 * 109.47185 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47349 * 300.00478 * 1 2 3 28 28 H 1.09000 * 109.47115 * 303.57631 * 4 2 1 29 29 H 1.09006 * 109.46939 * 63.57525 * 4 2 1 30 30 H 0.97003 * 120.00174 * 180.02562 * 8 7 5 31 31 H 1.09009 * 109.46313 * 65.82828 * 14 13 2 32 32 H 1.09001 * 109.46563 * 305.85895 * 14 13 2 33 33 H 1.08999 * 109.50319 * 180.88570 * 15 14 13 34 34 H 1.09003 * 109.49797 * 60.76462 * 15 14 13 35 35 H 1.09000 * 109.52677 * 297.68028 * 16 15 14 36 36 H 1.08991 * 110.56619 * 61.44860 * 18 17 16 37 37 H 1.09006 * 110.56384 * 298.59035 * 18 17 16 38 38 H 1.08995 * 110.52119 * 118.63591 * 19 18 17 39 39 H 1.09002 * 110.51431 * 241.22775 * 19 18 17 40 40 H 1.09003 * 109.50029 * 62.27905 * 23 16 15 41 41 H 1.08990 * 109.50701 * 182.39834 * 23 16 15 42 42 H 1.08996 * 109.46504 * 294.18322 * 24 13 2 43 43 H 1.09007 * 109.45702 * 54.14677 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5444 -0.6449 1.2943 6 1 4.0780 -0.0643 0.5564 7 6 4.2395 -1.3164 2.2777 8 7 3.5898 -2.0237 3.1760 9 14 6.1043 -1.2213 2.3340 10 1 6.5160 -0.0696 3.1762 11 1 6.6466 -2.4768 2.9126 12 1 6.6324 -1.0419 0.9578 13 7 2.0196 -0.6924 -1.1995 14 6 1.3862 -2.0095 -1.3422 15 6 2.0234 -2.7593 -2.5144 16 6 1.8402 -1.9423 -3.7964 17 7 2.4990 -2.6271 -4.9115 18 6 1.8355 -3.1032 -6.1349 19 6 2.9797 -3.7361 -6.9502 20 8 4.1575 -3.5521 -6.1126 21 6 3.8042 -2.9223 -4.9831 22 8 4.5961 -2.6440 -4.1044 23 6 2.4663 -0.5583 -3.6043 24 6 1.8162 0.1275 -2.4005 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6253 -0.2456 2.1380 29 1 1.7299 -1.7657 1.2178 30 1 4.0788 -2.4957 3.8681 31 1 0.3200 -1.8814 -1.5296 32 1 1.5274 -2.5818 -0.4253 33 1 1.5423 -3.7305 -2.6298 34 1 3.0870 -2.8999 -2.3213 35 1 0.7770 -1.8356 -4.0115 36 1 1.3929 -2.2694 -6.6797 37 1 1.0785 -3.8497 -5.8943 38 1 2.7900 -4.7967 -7.1153 39 1 3.1026 -3.2184 -7.9016 40 1 3.5368 -0.6644 -3.4283 41 1 2.3017 0.0429 -4.4983 42 1 0.7481 0.2458 -2.5830 43 1 2.2698 1.1076 -2.2522 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852721596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:20 Heat of formation + Delta-G solvation = -63.942357 kcal Electronic energy + Delta-G solvation = -23582.492261 eV Core-core repulsion = 20242.052303 eV Total energy + Delta-G solvation = -3340.439958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.60052 -38.99135 -37.09609 -36.00405 -33.67300 -32.19725 -30.59742 -30.07550 -28.67854 -27.23244 -24.50859 -23.80812 -23.07386 -22.78516 -21.22251 -19.74274 -18.65598 -17.38238 -17.32624 -16.57093 -16.07254 -15.41127 -14.97802 -14.55141 -14.34558 -14.23158 -14.07601 -13.92860 -13.63330 -13.32767 -13.07249 -12.58614 -12.57297 -12.14052 -11.85057 -11.68381 -11.47489 -11.35207 -11.06380 -10.87698 -10.70095 -10.56034 -10.43888 -10.39766 -10.22092 -9.98534 -9.87028 -9.11256 -8.91408 -8.83131 -8.16583 -7.39294 -5.79960 -3.76731 2.38274 2.80950 3.37904 3.48110 3.54272 3.63278 3.93189 4.37096 4.46668 4.56356 4.67397 4.91630 4.94864 4.99683 5.17722 5.21370 5.44635 5.52514 5.57498 5.59862 5.67016 5.79615 5.83657 5.92289 5.97681 6.02502 6.07142 6.25484 6.34418 6.52254 6.54850 6.60075 6.73520 6.79291 7.04262 7.36953 7.59116 7.74252 7.97931 8.08386 8.12341 8.21170 8.66603 9.28538 9.85077 11.32063 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017906 B = 0.005178 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.376741 B = 5405.679168 C = 6434.022166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.906 5.906 9 Si 0.886 3.114 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.508 5.508 14 C 0.064 3.936 15 C -0.132 4.132 16 C 0.182 3.818 17 N -0.628 5.628 18 C 0.065 3.935 19 C 0.041 3.959 20 O -0.334 6.334 21 C 0.636 3.364 22 O -0.500 6.500 23 C -0.131 4.131 24 C 0.061 3.939 25 H 0.038 0.962 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.014 0.986 29 H 0.022 0.978 30 H 0.256 0.744 31 H 0.024 0.976 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.452 -1.550 -21.118 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.006 4.006 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.147 4.147 8 N -0.547 5.547 9 Si 0.715 3.285 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.231 5.231 14 C -0.064 4.064 15 C -0.170 4.170 16 C 0.082 3.918 17 N -0.376 5.376 18 C -0.059 4.059 19 C -0.034 4.034 20 O -0.245 6.245 21 C 0.390 3.610 22 O -0.383 6.383 23 C -0.169 4.169 24 C -0.069 4.069 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.042 0.958 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.041 0.959 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.256 -1.662 -20.519 22.180 hybrid contribution -0.101 0.029 -0.190 0.217 sum -8.356 -1.633 -20.709 22.391 Atomic orbital electron populations 1.22523 0.99803 1.01304 1.00565 1.21917 0.89949 0.98263 0.91962 0.91323 1.19186 0.96423 0.95461 0.89568 1.21143 0.91524 1.28785 1.10950 0.92245 1.24961 0.97947 0.95809 0.96020 1.69957 1.35112 1.33116 1.16545 0.86666 0.86614 0.77001 0.78222 1.21107 1.21603 1.19693 1.61999 1.57827 1.02032 1.01274 1.21998 0.94177 0.91562 0.98701 1.22042 1.04641 0.97401 0.92964 1.21045 0.95174 0.91891 0.83703 1.48321 1.07630 1.61422 1.20235 1.22768 0.96494 1.00301 0.86303 1.24203 0.81820 1.03128 0.94272 1.87380 1.33802 1.73113 1.30209 1.18642 0.82978 0.77629 0.81785 1.91131 1.54135 1.56109 1.36926 1.22009 1.03502 0.93983 0.97437 1.21987 0.97137 0.97236 0.90492 0.94295 0.92795 0.92574 0.96752 0.95995 0.93439 0.95849 0.89036 0.92117 0.88876 0.89596 0.89355 0.89288 0.87937 0.87968 0.89024 0.92219 0.95894 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.07 8.40 37.15 0.31 -2.76 16 2 C 0.09 1.77 2.26 -67.72 -0.15 1.62 16 3 H 0.07 1.42 7.93 -51.93 -0.41 1.01 16 4 C 0.03 0.79 4.40 -27.89 -0.12 0.66 16 5 C -0.49 -14.01 8.80 -34.44 -0.30 -14.32 16 6 H 0.06 1.74 7.75 -52.49 -0.41 1.33 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.91 -27.95 13.29 55.43 0.74 -27.22 16 9 Si 0.89 23.17 29.54 -169.99 -5.02 18.15 16 10 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.27 -7.18 7.11 56.52 0.40 -6.78 16 13 N -0.51 -9.77 4.26 -226.70 -0.97 -10.74 16 14 C 0.06 1.13 4.47 -3.83 -0.02 1.11 16 15 C -0.13 -2.11 5.42 -26.65 -0.14 -2.25 16 16 C 0.18 2.38 2.86 -67.81 -0.19 2.19 16 17 N -0.63 -7.56 2.85 -170.99 -0.49 -8.05 16 18 C 0.07 0.43 7.67 -3.15 -0.02 0.41 16 19 C 0.04 0.26 8.22 37.73 0.31 0.57 16 20 O -0.33 -4.34 11.11 -38.57 -0.43 -4.76 16 21 C 0.64 9.94 8.31 53.71 0.45 10.39 16 22 O -0.50 -10.34 14.98 -19.11 -0.29 -10.63 16 23 C -0.13 -1.90 5.42 -26.65 -0.14 -2.05 16 24 C 0.06 0.94 5.18 -3.84 -0.02 0.92 16 25 H 0.04 0.57 6.93 -51.93 -0.36 0.21 16 26 H 0.05 0.89 6.45 -51.93 -0.33 0.56 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.02 0.60 6.39 -51.93 -0.33 0.26 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.02 0.36 6.57 -51.92 -0.34 0.02 16 32 H 0.09 1.88 6.28 -51.93 -0.33 1.55 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 1.88 6.74 -51.93 -0.35 1.53 16 35 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.09 1.68 6.72 -51.93 -0.35 1.33 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.02 0.32 6.98 -51.93 -0.36 -0.04 16 43 H 0.07 1.16 7.98 -51.93 -0.41 0.74 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -35.21 332.48 -8.52 -43.73 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -6.93 Total: -3.42 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.15 Total: -2.07 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.72 Total: -46.01 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.71 Total: -15.39 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.21 -8.52 -43.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852721596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.213 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds