Wall clock time and date at job start Tue Mar 31 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.52995 * 109.47447 * 240.00264 * 2 1 3 5 5 C 1.50700 * 109.46997 * 64.99684 * 4 2 1 6 6 H 1.08001 * 120.00548 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00161 * 180.02562 * 5 4 2 8 8 N 1.31511 * 120.00073 * 179.72132 * 7 5 4 9 9 Si 1.86802 * 119.99681 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47320 * 269.72274 * 9 7 5 11 11 H 1.48496 * 109.47298 * 29.72676 * 9 7 5 12 12 H 1.48501 * 109.46944 * 149.72306 * 9 7 5 13 13 C 1.53004 * 109.47567 * 120.00136 * 2 1 3 14 14 N 1.46906 * 109.46582 * 297.34271 * 13 2 1 15 15 C 1.46857 * 110.99417 * 169.60225 * 14 13 2 16 16 C 1.53142 * 109.45957 * 186.32902 * 15 14 13 17 17 C 1.52553 * 109.31373 * 301.69164 * 16 15 14 18 18 C 1.53624 * 110.32597 * 178.58059 * 17 16 15 19 19 O 1.45842 * 103.79428 * 118.84614 * 18 17 16 20 20 C 1.33844 * 109.45342 * 0.02562 * 19 18 17 21 21 O 1.21510 * 123.09230 * 179.97438 * 20 19 18 22 22 N 1.34178 * 113.81766 * 359.97438 * 20 19 18 23 23 C 1.52557 * 110.44279 * 56.35068 * 17 16 15 24 24 C 1.46847 * 111.00137 * 293.92529 * 14 13 2 25 25 H 1.09003 * 109.47049 * 174.70942 * 1 2 3 26 26 H 1.09007 * 109.46992 * 294.70124 * 1 2 3 27 27 H 1.08996 * 109.47254 * 54.70515 * 1 2 3 28 28 H 1.08999 * 109.46837 * 305.00091 * 4 2 1 29 29 H 1.08993 * 109.47466 * 184.99628 * 4 2 1 30 30 H 0.96997 * 119.99751 * 180.27411 * 8 7 5 31 31 H 1.08996 * 109.47061 * 57.34310 * 13 2 1 32 32 H 1.08994 * 109.46999 * 177.34465 * 13 2 1 33 33 H 1.08996 * 109.47578 * 306.32851 * 15 14 13 34 34 H 1.09002 * 109.47029 * 66.33707 * 15 14 13 35 35 H 1.09000 * 109.49933 * 181.73395 * 16 15 14 36 36 H 1.09004 * 109.52182 * 61.65604 * 16 15 14 37 37 H 1.08997 * 110.56398 * 237.42766 * 18 17 16 38 38 H 1.09007 * 110.55970 * 0.27372 * 18 17 16 39 39 H 0.97003 * 125.66820 * 179.97438 * 22 20 19 40 40 H 1.09000 * 109.49382 * 183.68721 * 23 17 16 41 41 H 1.09006 * 109.49709 * 63.60391 * 23 17 16 42 42 H 1.09000 * 109.47926 * 293.67223 * 24 14 13 43 43 H 1.08998 * 109.47271 * 53.68383 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0572 -2.4765 6 1 1.0799 0.9743 -2.3757 7 6 1.9924 -0.4020 -3.7283 8 7 1.6397 0.2743 -4.7996 9 14 2.9629 -1.9886 -3.9029 10 1 4.4162 -1.6843 -3.8860 11 1 2.6341 -2.8966 -2.7748 12 1 2.6097 -2.6462 -5.1867 13 6 2.0401 -0.7213 1.2492 14 7 1.6035 0.0074 2.4478 15 6 1.8585 -0.7774 3.6626 16 6 1.2503 -0.0594 4.8709 17 6 1.8563 1.3359 4.9862 18 6 1.2358 2.0908 6.1716 19 8 2.3716 2.3580 7.0466 20 6 3.4850 1.8582 6.4970 21 8 4.5786 1.9429 7.0197 22 7 3.2824 1.2551 5.3156 23 6 1.6463 2.1166 3.6924 24 6 2.2416 1.3279 2.5225 25 1 -0.3633 -1.0233 -0.0948 26 1 -0.3633 0.4295 0.9337 27 1 -0.3633 0.5937 -0.8387 28 1 1.6054 -1.7197 -1.2951 29 1 3.1263 -0.7993 -1.2056 30 1 1.8832 -0.0508 -5.6804 31 1 1.6384 -1.7342 1.2733 32 1 3.1290 -0.7626 1.2256 33 1 1.4054 -1.7634 3.5600 34 1 2.9335 -0.8846 3.8070 35 1 1.4657 -0.6256 5.7770 36 1 0.1712 0.0223 4.7408 37 1 0.7830 3.0239 5.8364 38 1 0.4997 1.4675 6.6793 39 1 3.9662 0.8359 4.7700 40 1 2.1409 3.0850 3.7676 41 1 0.5793 2.2647 3.5260 42 1 3.3138 1.2054 2.6751 43 1 2.0663 1.8692 1.5928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877313001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:47 Heat of formation + Delta-G solvation = -80.165306 kcal Electronic energy + Delta-G solvation = -23034.191597 eV Core-core repulsion = 19693.048158 eV Total energy + Delta-G solvation = -3341.143438 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.22190 -39.13535 -37.41101 -36.15040 -34.24098 -32.37331 -31.54418 -31.23237 -28.34927 -27.25539 -25.28767 -23.76627 -23.27439 -22.45954 -21.76949 -20.12931 -18.97219 -18.30056 -17.08502 -16.90576 -16.68846 -15.67087 -15.32209 -15.04729 -14.66576 -14.47113 -14.30634 -14.20470 -13.93760 -13.81217 -13.36144 -12.81679 -12.52121 -12.47232 -12.13626 -11.80246 -11.68685 -11.56000 -11.28780 -11.00772 -10.91464 -10.90101 -10.82255 -10.73069 -10.40371 -9.95350 -9.70924 -9.58225 -9.47304 -9.10362 -8.55258 -8.27516 -6.05679 -4.02897 2.42074 2.47827 3.20760 3.27894 3.36036 3.38630 3.65379 3.86270 4.10099 4.22019 4.43179 4.72767 4.79383 4.86061 4.91654 5.02640 5.13802 5.24105 5.27775 5.33577 5.35746 5.53573 5.58327 5.68873 5.70800 5.84058 5.89756 5.95450 6.20365 6.31918 6.48633 6.51248 6.78445 6.94439 6.98099 7.04496 7.12707 7.14947 7.25999 7.43649 7.78744 7.82543 8.53169 8.99850 9.57207 11.07738 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034257 B = 0.003372 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.153932 B = 8301.172221 C = 8443.338292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.061 0.939 4 C -0.009 4.009 5 C -0.513 4.513 6 H 0.073 0.927 7 C 0.065 3.935 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.266 1.266 12 H -0.288 1.288 13 C 0.058 3.942 14 N -0.532 5.532 15 C 0.055 3.945 16 C -0.116 4.116 17 C 0.122 3.878 18 C 0.050 3.950 19 O -0.331 6.331 20 C 0.646 3.354 21 O -0.528 6.528 22 N -0.724 5.724 23 C -0.117 4.117 24 C 0.052 3.948 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.015 0.985 29 H 0.007 0.993 30 H 0.262 0.738 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.433 0.567 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.030 0.970 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.847 0.426 20.809 21.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.047 4.047 5 C -0.551 4.551 6 H 0.091 0.909 7 C -0.136 4.136 8 N -0.544 5.544 9 Si 0.705 3.295 10 H -0.205 1.205 11 H -0.191 1.191 12 H -0.214 1.214 13 C -0.069 4.069 14 N -0.257 5.257 15 C -0.074 4.074 16 C -0.155 4.155 17 C 0.035 3.965 18 C -0.025 4.025 19 O -0.241 6.241 20 C 0.399 3.601 21 O -0.414 6.414 22 N -0.396 5.396 23 C -0.156 4.156 24 C -0.076 4.076 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.099 0.901 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.277 0.723 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.048 0.952 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.928 0.743 21.188 21.402 hybrid contribution 1.674 -1.260 -0.699 2.209 sum -1.254 -0.517 20.489 20.534 Atomic orbital electron populations 1.21575 0.95158 1.00881 1.00427 1.21040 0.96439 0.99035 0.92597 0.92065 1.19623 0.95332 0.96244 0.93534 1.21111 1.35369 1.09561 0.89069 0.90855 1.25030 0.95693 0.96858 0.95979 1.69909 1.47118 1.39334 0.98006 0.86816 0.80589 0.84538 0.77520 1.20456 1.19099 1.21450 1.22340 0.97267 0.97702 0.89563 1.61939 1.58802 1.02919 1.01997 1.22060 0.98158 0.97446 0.89710 1.21912 1.01770 0.93168 0.98618 1.21423 0.81310 0.97687 0.96091 1.24458 0.87663 1.02069 0.88349 1.87292 1.17589 1.73542 1.45651 1.18571 0.84171 0.76924 0.80464 1.91077 1.21163 1.62750 1.66365 1.46106 1.10141 1.60995 1.22355 1.21937 1.03559 0.98015 0.92065 1.22139 0.95441 0.90864 0.99197 0.94175 0.93469 0.92529 0.96635 0.97488 0.92799 0.91078 0.95315 0.90083 0.95273 0.90750 0.88901 0.87228 0.87341 0.72303 0.90583 0.88856 0.95208 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 8.85 37.16 0.33 -1.81 16 2 C -0.07 -1.30 2.23 -90.62 -0.20 -1.50 16 3 H 0.06 1.13 6.32 -51.93 -0.33 0.80 16 4 C -0.01 -0.21 3.51 -27.89 -0.10 -0.31 16 5 C -0.51 -14.03 9.03 -34.44 -0.31 -14.35 16 6 H 0.07 2.16 7.30 -52.49 -0.38 1.77 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 9 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.06 0.83 4.38 -3.82 -0.02 0.81 16 14 N -0.53 -5.93 3.90 -234.53 -0.92 -6.85 16 15 C 0.05 0.49 5.37 -3.77 -0.02 0.46 16 16 C -0.12 -0.78 4.91 -26.89 -0.13 -0.91 16 17 C 0.12 0.87 0.88 -131.90 -0.12 0.75 16 18 C 0.05 0.30 7.51 37.48 0.28 0.59 16 19 O -0.33 -3.51 11.10 -38.01 -0.42 -3.93 16 20 C 0.65 7.88 9.16 53.79 0.49 8.37 16 21 O -0.53 -8.65 18.04 -19.11 -0.34 -9.00 16 22 N -0.72 -6.58 5.20 -52.90 -0.28 -6.85 16 23 C -0.12 -0.90 4.91 -26.89 -0.13 -1.03 16 24 C 0.05 0.54 5.21 -3.78 -0.02 0.52 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.71 7.53 -51.92 -0.39 0.32 16 27 H 0.06 1.11 7.11 -51.93 -0.37 0.74 16 28 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 29 H 0.01 0.16 7.57 -51.93 -0.39 -0.24 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.07 1.01 7.97 -51.93 -0.41 0.59 16 32 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.08 0.71 8.00 -51.93 -0.42 0.30 16 34 H 0.03 0.26 7.44 -51.93 -0.39 -0.12 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.11 0.47 7.71 -51.93 -0.40 0.07 16 38 H 0.11 0.43 7.71 -51.92 -0.40 0.03 16 39 H 0.43 3.78 7.81 -40.82 -0.32 3.46 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.03 0.31 7.44 -51.93 -0.39 -0.07 16 43 H 0.09 1.13 6.16 -51.93 -0.32 0.81 16 LS Contribution 332.26 15.07 5.01 5.01 Total: -1.00 -32.71 332.26 -7.87 -40.58 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.98 Total: -2.33 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.04 Total: -6.63 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: -0.42 Total: -40.38 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -0.77 Total: -12.93 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.71 -7.87 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877313001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.588 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds