Wall clock time and date at job start Tue Mar 31 2020 05:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46755 * 2 1 4 4 C 1.52995 * 109.47195 * 119.99752 * 2 1 3 5 5 C 1.50701 * 109.47392 * 295.00328 * 4 2 1 6 6 H 1.08000 * 120.00045 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00143 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00164 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47343 * 60.00466 * 9 7 5 11 11 H 1.48499 * 109.47367 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47358 * 300.00456 * 9 7 5 13 13 C 1.53001 * 109.47423 * 240.00452 * 2 1 3 14 14 N 1.46895 * 109.47183 * 62.02169 * 13 2 1 15 15 C 1.46856 * 110.99885 * 176.28731 * 14 13 2 16 16 C 1.53145 * 109.46131 * 173.66843 * 15 14 13 17 17 C 1.52557 * 109.30741 * 58.30554 * 16 15 14 18 18 C 1.53622 * 110.32034 * 181.40799 * 17 16 15 19 19 O 1.45842 * 103.80252 * 241.15883 * 18 17 16 20 20 C 1.33849 * 109.44400 * 359.97438 * 19 18 17 21 21 O 1.21513 * 123.09189 * 179.97438 * 20 19 18 22 22 N 1.34171 * 113.82156 * 0.02562 * 20 19 18 23 23 C 1.52551 * 110.45387 * 303.64472 * 17 16 15 24 24 C 1.46855 * 110.99911 * 51.95765 * 14 13 2 25 25 H 1.09005 * 109.46755 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47487 * 299.99662 * 1 2 3 27 27 H 1.09002 * 109.47165 * 60.00446 * 1 2 3 28 28 H 1.09001 * 109.46875 * 55.00256 * 4 2 1 29 29 H 1.09003 * 109.47167 * 175.00593 * 4 2 1 30 30 H 0.97002 * 119.99975 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46507 * 302.02141 * 13 2 1 32 32 H 1.09000 * 109.46832 * 182.02274 * 13 2 1 33 33 H 1.09000 * 109.46833 * 53.67366 * 15 14 13 34 34 H 1.08991 * 109.47476 * 293.67069 * 15 14 13 35 35 H 1.08992 * 109.50158 * 298.35496 * 16 15 14 36 36 H 1.09000 * 109.52178 * 178.27157 * 16 15 14 37 37 H 1.08992 * 110.56101 * 359.73943 * 18 17 16 38 38 H 1.09002 * 110.55829 * 122.58073 * 18 17 16 39 39 H 0.96991 * 125.66774 * 179.97438 * 22 20 19 40 40 H 1.08999 * 109.49782 * 176.30156 * 23 17 16 41 41 H 1.08997 * 109.49874 * 296.40146 * 23 17 16 42 42 H 1.09001 * 109.47341 * 306.31893 * 24 14 13 43 43 H 1.09000 * 109.47544 * 66.32931 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9923 -0.4022 3.7283 8 7 2.6755 -1.5192 3.8512 9 14 1.4975 0.5621 5.2497 10 1 0.0175 0.6685 5.3087 11 1 1.9926 -0.1378 6.4622 12 1 2.0894 1.9226 5.1877 13 6 2.0401 -0.7211 -1.2493 14 7 1.5908 -0.0010 -2.4481 15 6 2.1355 -0.6150 -3.6659 16 6 1.5226 0.0608 -4.8960 17 6 1.8280 1.5549 -4.8553 18 6 1.1932 2.2622 -6.0623 19 8 2.3340 2.8260 -6.7748 20 6 3.4621 2.5202 -6.1225 21 8 4.5629 2.8677 -6.5020 22 7 3.2659 1.7938 -5.0117 23 6 1.3193 2.1678 -3.5543 24 6 1.9387 1.4235 -2.3677 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7197 1.2951 29 1 3.1263 -0.7993 1.2056 30 1 2.9228 -1.8421 4.7318 31 1 1.6474 -1.7378 -1.2676 32 1 3.1295 -0.7526 -1.2312 33 1 1.8932 -1.6776 -3.6766 34 1 3.2179 -0.4889 -3.6835 35 1 0.4432 -0.0901 -4.8942 36 1 1.9491 -0.3732 -5.8004 37 1 0.6649 1.5460 -6.6914 38 1 0.5195 3.0529 -5.7318 39 1 3.9600 1.4788 -4.4120 40 1 1.6029 3.2194 -3.5121 41 1 0.2336 2.0812 -3.5114 42 1 1.5536 1.8396 -1.4367 43 1 3.0226 1.5349 -2.3946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877313003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:49 Heat of formation + Delta-G solvation = -81.840672 kcal Electronic energy + Delta-G solvation = -23047.856020 eV Core-core repulsion = 19706.639933 eV Total energy + Delta-G solvation = -3341.216087 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18306 -39.11230 -37.37581 -36.09085 -34.14247 -32.38859 -31.50142 -31.08352 -28.15101 -26.81284 -25.26261 -23.72327 -23.34857 -22.51614 -21.91455 -20.14491 -18.81664 -18.25944 -17.04015 -16.78525 -16.40635 -15.53247 -15.22169 -15.01078 -14.68141 -14.48457 -14.38567 -14.22733 -13.91184 -13.76684 -13.20284 -12.73707 -12.33439 -12.24046 -12.14139 -11.66600 -11.52672 -11.38225 -11.21897 -10.89442 -10.87609 -10.86012 -10.79153 -10.74847 -10.35225 -10.27016 -9.72149 -9.53875 -9.22281 -9.01090 -8.37242 -8.19356 -6.02228 -4.03895 2.46182 2.51706 3.24752 3.30855 3.35882 3.37687 3.69675 3.95152 4.14358 4.26603 4.44036 4.76615 4.84047 4.90946 4.96411 5.09326 5.20015 5.30020 5.33730 5.40200 5.43729 5.61502 5.65362 5.74014 5.78637 5.91506 5.95986 6.05842 6.32833 6.42345 6.53419 6.55495 6.90734 7.01972 7.02090 7.11177 7.23317 7.28321 7.62657 7.77922 7.86721 7.97053 8.40372 9.02145 9.59882 11.09212 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032477 B = 0.003306 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.953613 B = 8466.206624 C = 8584.929072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.086 4.086 3 H 0.057 0.943 4 C 0.028 3.972 5 C -0.515 4.515 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.054 3.946 16 C -0.116 4.116 17 C 0.122 3.878 18 C 0.050 3.950 19 O -0.331 6.331 20 C 0.646 3.354 21 O -0.529 6.529 22 N -0.723 5.723 23 C -0.117 4.117 24 C 0.048 3.952 25 H 0.041 0.959 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.016 0.984 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.080 0.920 34 H 0.030 0.970 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.434 0.566 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.206 4.034 -18.477 19.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.105 4.105 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.553 4.553 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.258 5.258 15 C -0.074 4.074 16 C -0.154 4.154 17 C 0.035 3.965 18 C -0.025 4.025 19 O -0.241 6.241 20 C 0.399 3.601 21 O -0.414 6.414 22 N -0.395 5.395 23 C -0.156 4.156 24 C -0.080 4.080 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.278 0.722 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -5.219 4.252 -18.902 20.065 hybrid contribution 0.938 0.190 1.437 1.727 sum -4.281 4.442 -17.465 18.523 Atomic orbital electron populations 1.21593 0.95556 1.00798 1.00075 1.21330 0.96121 0.99027 0.94037 0.92448 1.19108 0.95891 0.95590 0.90365 1.21172 1.34836 1.08327 0.90982 0.92658 1.25012 0.95275 0.95065 0.99104 1.69949 1.38905 1.21184 1.23559 0.86695 0.78916 0.80103 0.82508 1.20237 1.21350 1.20315 1.22316 0.97188 0.98044 0.89037 1.61992 1.59646 1.01960 1.02173 1.22051 0.96383 0.99291 0.89696 1.21909 1.03080 0.91866 0.98588 1.21424 0.81053 0.97450 0.96590 1.24453 0.87494 0.98900 0.91697 1.87290 1.16279 1.71517 1.49027 1.18570 0.84284 0.77701 0.79595 1.91077 1.20847 1.58737 1.70704 1.46106 1.08913 1.57060 1.27466 1.21946 1.02252 0.99238 0.92147 1.22199 0.97708 0.88999 0.99051 0.93981 0.92752 0.93986 0.96536 0.96991 0.92989 0.90917 0.95371 0.90115 0.95216 0.88988 0.90778 0.87377 0.87290 0.72240 0.90666 0.88993 0.88521 0.95212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.16 8.79 37.16 0.33 -1.83 16 2 C -0.09 -1.61 1.85 -90.62 -0.17 -1.78 16 3 H 0.06 1.08 6.06 -51.93 -0.31 0.76 16 4 C 0.03 0.68 4.45 -27.89 -0.12 0.56 16 5 C -0.51 -13.93 8.41 -34.44 -0.29 -14.22 16 6 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.44 13.29 55.43 0.74 -25.71 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 C 0.06 0.94 4.54 -3.83 -0.02 0.92 16 14 N -0.53 -6.34 4.07 -234.52 -0.96 -7.29 16 15 C 0.05 0.52 5.37 -3.77 -0.02 0.50 16 16 C -0.12 -0.83 4.91 -26.88 -0.13 -0.97 16 17 C 0.12 0.93 0.88 -131.90 -0.12 0.81 16 18 C 0.05 0.32 7.51 37.48 0.28 0.60 16 19 O -0.33 -3.63 11.10 -38.03 -0.42 -4.05 16 20 C 0.65 8.16 9.16 53.78 0.49 8.66 16 21 O -0.53 -8.88 18.04 -19.11 -0.34 -9.22 16 22 N -0.72 -6.98 5.20 -52.91 -0.28 -7.26 16 23 C -0.12 -0.95 4.91 -26.88 -0.13 -1.09 16 24 C 0.05 0.54 4.89 -3.77 -0.02 0.52 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 1.04 6.95 -51.93 -0.36 0.68 16 27 H 0.04 0.63 7.57 -51.93 -0.39 0.24 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 34 H 0.03 0.30 7.44 -51.93 -0.39 -0.09 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.11 0.46 7.71 -51.93 -0.40 0.06 16 38 H 0.11 0.50 7.71 -51.93 -0.40 0.10 16 39 H 0.43 4.09 7.81 -40.82 -0.32 3.77 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.24 5.69 -51.93 -0.30 0.94 16 43 H 0.03 0.34 7.44 -51.93 -0.39 -0.04 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -32.06 334.82 -8.24 -40.30 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.99 Total: -2.20 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -0.01 Total: -5.83 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: -0.49 Total: -40.26 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.77 Total: -13.27 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.06 -8.24 -40.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877313003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.541 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds