Wall clock time and date at job start Tue Mar 31 2020 05:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46755 * 2 1 4 4 C 1.52995 * 109.47195 * 119.99752 * 2 1 3 5 5 C 1.50701 * 109.47392 * 295.00328 * 4 2 1 6 6 H 1.08000 * 120.00045 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00143 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99957 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00164 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47343 * 60.00466 * 9 7 5 11 11 H 1.48499 * 109.47367 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47358 * 300.00456 * 9 7 5 13 13 C 1.53001 * 109.47423 * 240.00452 * 2 1 3 14 14 N 1.46895 * 109.47183 * 62.02169 * 13 2 1 15 15 C 1.46856 * 110.99885 * 176.28731 * 14 13 2 16 16 C 1.53145 * 109.46131 * 173.66843 * 15 14 13 17 17 C 1.52557 * 109.30741 * 58.30554 * 16 15 14 18 18 C 1.53622 * 110.32034 * 181.40799 * 17 16 15 19 19 O 1.45842 * 103.80252 * 241.15883 * 18 17 16 20 20 C 1.33849 * 109.44400 * 359.97438 * 19 18 17 21 21 O 1.21513 * 123.09189 * 179.97438 * 20 19 18 22 22 N 1.34171 * 113.82156 * 0.02562 * 20 19 18 23 23 C 1.52551 * 110.45387 * 303.64472 * 17 16 15 24 24 C 1.46855 * 110.99911 * 51.95765 * 14 13 2 25 25 H 1.09005 * 109.46755 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47487 * 299.99662 * 1 2 3 27 27 H 1.09002 * 109.47165 * 60.00446 * 1 2 3 28 28 H 1.09001 * 109.46875 * 55.00256 * 4 2 1 29 29 H 1.09003 * 109.47167 * 175.00593 * 4 2 1 30 30 H 0.97002 * 119.99975 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.46507 * 302.02141 * 13 2 1 32 32 H 1.09000 * 109.46832 * 182.02274 * 13 2 1 33 33 H 1.09000 * 109.46833 * 53.67366 * 15 14 13 34 34 H 1.08991 * 109.47476 * 293.67069 * 15 14 13 35 35 H 1.08992 * 109.50158 * 298.35496 * 16 15 14 36 36 H 1.09000 * 109.52178 * 178.27157 * 16 15 14 37 37 H 1.08992 * 110.56101 * 359.73943 * 18 17 16 38 38 H 1.09002 * 110.55829 * 122.58073 * 18 17 16 39 39 H 0.96991 * 125.66774 * 179.97438 * 22 20 19 40 40 H 1.08999 * 109.49782 * 176.30156 * 23 17 16 41 41 H 1.08997 * 109.49874 * 296.40146 * 23 17 16 42 42 H 1.09001 * 109.47341 * 306.31893 * 24 14 13 43 43 H 1.09000 * 109.47544 * 66.32931 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9923 -0.4022 3.7283 8 7 2.6755 -1.5192 3.8512 9 14 1.4975 0.5621 5.2497 10 1 0.0175 0.6685 5.3087 11 1 1.9926 -0.1378 6.4622 12 1 2.0894 1.9226 5.1877 13 6 2.0401 -0.7211 -1.2493 14 7 1.5908 -0.0010 -2.4481 15 6 2.1355 -0.6150 -3.6659 16 6 1.5226 0.0608 -4.8960 17 6 1.8280 1.5549 -4.8553 18 6 1.1932 2.2622 -6.0623 19 8 2.3340 2.8260 -6.7748 20 6 3.4621 2.5202 -6.1225 21 8 4.5629 2.8677 -6.5020 22 7 3.2659 1.7938 -5.0117 23 6 1.3193 2.1678 -3.5543 24 6 1.9387 1.4235 -2.3677 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7197 1.2951 29 1 3.1263 -0.7993 1.2056 30 1 2.9228 -1.8421 4.7318 31 1 1.6474 -1.7378 -1.2676 32 1 3.1295 -0.7526 -1.2312 33 1 1.8932 -1.6776 -3.6766 34 1 3.2179 -0.4889 -3.6835 35 1 0.4432 -0.0901 -4.8942 36 1 1.9491 -0.3732 -5.8004 37 1 0.6649 1.5460 -6.6914 38 1 0.5195 3.0529 -5.7318 39 1 3.9600 1.4788 -4.4120 40 1 1.6029 3.2194 -3.5121 41 1 0.2336 2.0812 -3.5114 42 1 1.5536 1.8396 -1.4367 43 1 3.0226 1.5349 -2.3946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877313003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:48 Heat of formation + Delta-G solvation = -104.695194 kcal Electronic energy + Delta-G solvation = -23048.847066 eV Core-core repulsion = 19706.639933 eV Total energy + Delta-G solvation = -3342.207134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.96027 -40.08200 -38.41812 -37.26494 -35.49865 -34.07346 -32.47016 -31.92327 -29.27797 -28.42781 -26.50946 -24.82143 -24.43359 -23.60797 -22.90766 -21.02165 -20.24266 -19.04713 -18.52914 -17.83440 -17.55745 -16.77360 -16.33273 -16.19133 -15.93200 -15.53060 -15.23063 -15.09824 -15.03342 -14.55453 -14.39498 -14.21480 -13.70036 -13.45975 -13.11483 -13.08575 -12.79907 -12.72274 -12.48868 -12.25519 -12.24080 -12.12792 -11.86574 -11.80177 -11.64550 -11.56290 -11.31528 -11.02821 -10.82454 -10.52127 -10.34297 -9.22018 -8.17167 -6.26205 1.40750 1.42831 1.50445 1.58545 1.68298 2.42058 2.58513 2.94901 3.13996 3.16722 3.55197 3.59290 4.03990 4.09171 4.21422 4.28509 4.39731 4.40975 4.44640 4.48811 4.55532 4.64836 4.70693 4.87657 4.91362 4.94164 4.97837 5.03583 5.10366 5.14556 5.25743 5.32283 5.50609 5.55249 5.56859 5.70713 5.83368 5.90038 6.09297 6.22548 6.23860 6.32154 6.90388 6.96951 7.42386 8.94667 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.032477 B = 0.003306 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.953613 B = 8466.206624 C = 8584.929072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.077 4.077 3 H 0.057 0.943 4 C 0.032 3.968 5 C -0.528 4.528 6 H 0.062 0.938 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.268 1.268 13 C 0.072 3.928 14 N -0.525 5.525 15 C 0.050 3.950 16 C -0.106 4.106 17 C 0.122 3.878 18 C 0.048 3.952 19 O -0.343 6.343 20 C 0.646 3.354 21 O -0.582 6.582 22 N -0.714 5.714 23 C -0.108 4.108 24 C 0.045 3.955 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.073 0.927 28 H -0.010 1.010 29 H -0.019 1.019 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.014 0.986 33 H 0.083 0.917 34 H 0.023 0.977 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.433 0.567 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 5.052 -19.652 21.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.095 4.095 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.566 4.566 6 H 0.080 0.920 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.783 3.217 10 H -0.190 1.190 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.056 4.056 14 N -0.250 5.250 15 C -0.078 4.078 16 C -0.145 4.145 17 C 0.036 3.964 18 C -0.025 4.025 19 O -0.253 6.253 20 C 0.399 3.601 21 O -0.471 6.471 22 N -0.385 5.385 23 C -0.147 4.147 24 C -0.083 4.083 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.008 0.992 29 H 0.000 1.000 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.102 0.898 34 H 0.041 0.959 35 H 0.131 0.869 36 H 0.104 0.896 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.277 0.723 40 H 0.098 0.902 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -7.525 5.270 -20.083 22.084 hybrid contribution 1.617 -0.169 1.808 2.431 sum -5.908 5.100 -18.275 19.872 Atomic orbital electron populations 1.21479 0.94202 1.00574 1.00638 1.21122 0.97060 0.98438 0.92897 0.92453 1.19012 0.93844 0.94764 0.92934 1.21619 1.34352 1.08596 0.92040 0.91969 1.25935 0.95299 0.96050 1.02641 1.70093 1.40343 1.22993 1.24288 0.85598 0.79036 0.78754 0.78274 1.19048 1.21257 1.19343 1.22012 0.96190 0.97863 0.89493 1.61986 1.59345 1.02152 1.01471 1.22165 0.96287 0.99772 0.89592 1.21890 1.04216 0.90959 0.97403 1.21586 0.79674 0.98057 0.97091 1.24866 0.86257 1.00247 0.91136 1.87266 1.16790 1.71737 1.49517 1.18655 0.84071 0.77452 0.79886 1.91029 1.23092 1.60828 1.72149 1.46143 1.10128 1.55886 1.26388 1.21909 1.03175 0.98918 0.90669 1.22229 0.97461 0.88681 0.99948 0.94556 0.94649 0.90785 0.99184 1.00049 0.93008 0.91258 0.96742 0.89814 0.95853 0.86872 0.89612 0.84396 0.84776 0.72329 0.90173 0.86938 0.90174 0.96166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.80 8.79 71.98 0.63 -3.16 16 2 C -0.08 -2.86 1.85 -10.80 -0.02 -2.88 16 3 H 0.06 2.15 6.06 -2.38 -0.01 2.14 16 4 C 0.03 1.63 4.45 29.85 0.13 1.76 16 5 C -0.53 -29.03 8.41 25.60 0.22 -28.82 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 8 N -0.94 -56.67 13.29 21.45 0.28 -56.39 16 9 Si 0.96 43.68 29.54 68.60 2.03 45.71 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 13 C 0.07 2.21 4.54 86.30 0.39 2.60 16 14 N -0.53 -11.50 4.07 -895.88 -3.65 -15.15 16 15 C 0.05 0.85 5.37 86.36 0.46 1.31 16 16 C -0.11 -1.12 4.91 30.50 0.15 -0.98 16 17 C 0.12 1.45 0.88 3.50 0.00 1.45 16 18 C 0.05 0.42 7.51 72.19 0.54 0.96 16 19 O -0.34 -6.73 11.10 -48.03 -0.53 -7.27 16 20 C 0.65 15.69 9.16 129.89 1.19 16.88 16 21 O -0.58 -19.81 18.04 19.64 0.35 -19.45 16 22 N -0.71 -12.68 5.20 -552.79 -2.87 -15.55 16 23 C -0.11 -1.39 4.91 30.50 0.15 -1.24 16 24 C 0.04 0.92 4.89 86.36 0.42 1.34 16 25 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.03 1.32 6.95 -2.39 -0.02 1.30 16 27 H 0.07 2.03 7.57 -2.39 -0.02 2.01 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 30 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 31 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.08 1.41 8.12 -2.39 -0.02 1.39 16 34 H 0.02 0.44 7.44 -2.39 -0.02 0.42 16 35 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.14 0.44 7.71 -2.39 -0.02 0.42 16 38 H 0.13 0.55 7.71 -2.39 -0.02 0.53 16 39 H 0.43 7.87 7.81 -92.72 -0.72 7.15 16 40 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.08 1.93 5.69 -2.39 -0.01 1.92 16 43 H 0.02 0.45 7.44 -2.39 -0.02 0.43 16 Total: -1.00 -72.34 334.82 0.62 -71.72 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.28 Total: 6.82 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 4.74 Total: -10.43 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -6.24 Total: -87.10 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.18 Total: -26.72 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -72.34 0.62 -71.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877313003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.976 kcal (2) G-P(sol) polarization free energy of solvation -72.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds