Wall clock time and date at job start Tue Mar 31 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46823 * 2 1 4 4 C 1.52995 * 109.47014 * 240.00176 * 2 1 3 5 5 C 1.50693 * 109.47389 * 64.99568 * 4 2 1 6 6 H 1.08003 * 119.99972 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00174 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00273 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99837 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47300 * 89.99434 * 9 7 5 11 11 H 1.48504 * 109.46908 * 209.99381 * 9 7 5 12 12 H 1.48499 * 109.47087 * 329.99409 * 9 7 5 13 13 C 1.52996 * 109.46760 * 119.99983 * 2 1 3 14 14 N 1.46901 * 109.47272 * 294.99639 * 13 2 1 15 15 C 1.46860 * 111.00183 * 170.00455 * 14 13 2 16 16 C 1.53136 * 109.45633 * 186.32969 * 15 14 13 17 17 C 1.52590 * 109.30777 * 301.66741 * 16 15 14 18 18 C 1.53638 * 110.26069 * 178.49743 * 17 16 15 19 19 N 1.47225 * 103.58766 * 118.91536 * 18 17 16 20 20 C 1.34082 * 108.84572 * 359.97438 * 19 18 17 21 21 O 1.21510 * 123.08765 * 180.02562 * 20 19 18 22 22 O 1.33929 * 113.81834 * 359.97438 * 20 19 18 23 23 C 1.52584 * 110.40558 * 56.40237 * 17 16 15 24 24 C 1.46851 * 111.00151 * 294.34909 * 14 13 2 25 25 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47107 * 299.99916 * 1 2 3 27 27 H 1.08999 * 109.47354 * 59.99926 * 1 2 3 28 28 H 1.08997 * 109.46995 * 185.00434 * 4 2 1 29 29 H 1.09003 * 109.46827 * 304.99813 * 4 2 1 30 30 H 0.96998 * 119.99813 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47012 * 175.00318 * 13 2 1 32 32 H 1.08994 * 109.47345 * 55.00295 * 13 2 1 33 33 H 1.09003 * 109.47167 * 66.32943 * 15 14 13 34 34 H 1.09007 * 109.46957 * 306.32322 * 15 14 13 35 35 H 1.09000 * 109.50043 * 61.61738 * 16 15 14 36 36 H 1.09005 * 109.49631 * 181.71823 * 16 15 14 37 37 H 1.09002 * 110.59652 * 237.44094 * 18 17 16 38 38 H 1.09003 * 110.60503 * 0.23245 * 18 17 16 39 39 H 0.96999 * 125.58063 * 180.02562 * 19 18 17 40 40 H 1.09007 * 109.49712 * 63.54618 * 23 17 16 41 41 H 1.08994 * 109.49751 * 183.64419 * 23 17 16 42 42 H 1.08999 * 109.47414 * 53.67745 * 24 14 13 43 43 H 1.09001 * 109.47679 * 293.66736 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0805 0.9745 -2.3756 7 6 1.9932 -0.4017 -3.7282 8 7 1.6456 0.2777 -4.7993 9 14 2.9636 -1.9883 -3.9027 10 1 2.0245 -3.1327 -4.0198 11 1 3.8125 -1.9181 -5.1192 12 1 3.8253 -2.1755 -2.7079 13 6 2.0399 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 1.9124 -0.7354 3.6668 16 6 1.3522 0.0178 4.8767 17 6 1.9996 1.3973 4.9562 18 6 1.4251 2.1871 6.1422 19 7 2.6002 2.4370 6.9931 20 6 3.6789 1.8910 6.4132 21 8 4.7915 1.9446 6.8985 22 8 3.4169 1.2803 5.2504 23 6 1.7805 2.1636 3.6551 24 6 2.3268 1.3409 2.4847 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.1263 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.8929 -0.0453 -5.6799 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 2.9871 -0.8706 3.7885 34 1 1.4299 -1.7099 3.5901 35 1 0.2731 0.1281 4.7690 36 1 1.5724 -0.5404 5.7867 37 1 0.9906 3.1273 5.8024 38 1 0.6823 1.5931 6.6749 39 1 2.5950 2.9174 7.8358 40 1 0.7142 2.3381 3.5107 41 1 2.3028 3.1191 3.7032 42 1 2.1450 1.8725 1.5506 43 1 3.3986 1.1910 2.6148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877460785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:42 Heat of formation + Delta-G solvation = -80.567615 kcal Electronic energy + Delta-G solvation = -23017.705592 eV Core-core repulsion = 19676.544709 eV Total energy + Delta-G solvation = -3341.160884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.13158 -38.96917 -37.31558 -35.23792 -35.02583 -32.78929 -31.67076 -31.15398 -27.94022 -27.04755 -25.06902 -23.69978 -23.01010 -22.83366 -21.76342 -20.32886 -18.89448 -17.74983 -16.92217 -16.84925 -16.70766 -15.82567 -15.18287 -15.15360 -14.61631 -14.34246 -14.25228 -13.98944 -13.87282 -13.77706 -13.33449 -12.76922 -12.42750 -12.39214 -12.02987 -11.85860 -11.61606 -11.45287 -11.33645 -11.02685 -10.96712 -10.76566 -10.68271 -10.55741 -10.38593 -9.75390 -9.73173 -9.65345 -9.39416 -9.04758 -8.50706 -8.13887 -6.01321 -3.98143 2.42242 2.48096 3.17640 3.32283 3.40033 3.43697 3.71063 3.99483 4.10458 4.24497 4.47816 4.73518 4.85029 4.87012 4.97114 5.18395 5.32138 5.32672 5.34639 5.39918 5.41759 5.61693 5.67415 5.80278 5.82676 5.95566 6.03022 6.05489 6.27853 6.41242 6.41976 6.58557 6.82997 7.00877 7.01205 7.13312 7.23436 7.24863 7.34987 7.49989 7.81296 7.83844 8.58030 9.04294 9.61875 11.12099 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033581 B = 0.003393 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.609623 B = 8250.853954 C = 8399.407587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 H 0.062 0.938 4 C -0.010 4.010 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.059 3.941 14 N -0.533 5.533 15 C 0.054 3.946 16 C -0.112 4.112 17 C 0.096 3.904 18 C 0.074 3.926 19 N -0.739 5.739 20 C 0.643 3.357 21 O -0.529 6.529 22 O -0.314 6.314 23 C -0.114 4.114 24 C 0.051 3.949 25 H 0.038 0.962 26 H 0.044 0.956 27 H 0.058 0.942 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.262 0.738 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.433 0.567 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.092 0.908 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.982 2.573 23.755 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 H 0.081 0.919 4 C -0.048 4.048 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.068 4.068 14 N -0.258 5.258 15 C -0.074 4.074 16 C -0.150 4.150 17 C 0.058 3.942 18 C -0.051 4.051 19 N -0.412 5.412 20 C 0.396 3.604 21 O -0.414 6.414 22 O -0.224 6.224 23 C -0.151 4.151 24 C -0.077 4.077 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.030 0.970 29 H 0.029 0.971 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.276 0.724 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.110 0.890 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.725 2.455 23.451 23.872 hybrid contribution 1.259 -0.736 0.204 1.472 sum -2.466 1.718 23.655 23.846 Atomic orbital electron populations 1.21587 0.95273 1.00572 1.00626 1.21048 0.96311 0.99166 0.92634 0.91944 1.19621 0.95744 0.95897 0.93530 1.21121 1.35221 1.09556 0.89077 0.90840 1.25027 0.95655 0.96924 0.95976 1.69914 1.47253 1.39319 0.98002 0.86812 0.80659 0.84376 0.77622 1.20379 1.21515 1.19119 1.22329 0.97768 0.97212 0.89530 1.61974 1.58317 1.03553 1.01952 1.22031 0.99145 0.96922 0.89328 1.21856 1.01215 0.92772 0.99183 1.22971 0.77450 0.97843 0.95928 1.22937 0.89409 1.01694 0.91089 1.46014 1.08103 1.60541 1.26535 1.18687 0.85097 0.76910 0.79702 1.91071 1.22105 1.63306 1.64904 1.87357 1.27807 1.70684 1.36544 1.21880 1.03551 0.98005 0.91697 1.22115 0.96212 0.90776 0.98592 0.94284 0.93709 0.92298 0.96969 0.97083 0.92844 0.95215 0.91157 0.94337 0.90223 0.88415 0.90679 0.88607 0.88704 0.72428 0.88361 0.90506 0.88986 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 8.89 37.16 0.33 -1.89 16 2 C -0.07 -1.37 2.26 -90.62 -0.20 -1.58 16 3 H 0.06 1.21 6.21 -51.93 -0.32 0.89 16 4 C -0.01 -0.23 3.52 -27.89 -0.10 -0.33 16 5 C -0.51 -14.27 8.96 -34.44 -0.31 -14.58 16 6 H 0.07 2.19 7.30 -52.48 -0.38 1.81 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.91 -27.84 13.96 55.43 0.77 -27.07 16 9 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.06 0.92 4.35 -3.83 -0.02 0.90 16 14 N -0.53 -6.84 4.10 -234.52 -0.96 -7.80 16 15 C 0.05 0.59 5.38 -3.78 -0.02 0.57 16 16 C -0.11 -0.90 4.94 -26.87 -0.13 -1.03 16 17 C 0.10 0.81 0.92 -90.71 -0.08 0.73 16 18 C 0.07 0.39 7.34 -3.32 -0.02 0.37 16 19 N -0.74 -5.50 6.41 -64.81 -0.42 -5.92 16 20 C 0.64 7.99 9.16 53.74 0.49 8.48 16 21 O -0.53 -8.76 18.04 -19.11 -0.34 -9.10 16 22 O -0.31 -3.89 9.87 -38.23 -0.38 -4.27 16 23 C -0.11 -1.02 4.94 -26.87 -0.13 -1.15 16 24 C 0.05 0.63 5.22 -3.78 -0.02 0.61 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.70 7.75 -51.93 -0.40 0.30 16 27 H 0.06 1.20 6.95 -51.93 -0.36 0.83 16 28 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 29 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.07 1.07 7.98 -51.93 -0.41 0.65 16 33 H 0.04 0.48 7.95 -51.93 -0.41 0.07 16 34 H 0.08 0.81 8.01 -51.92 -0.42 0.39 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.35 7.71 -51.93 -0.40 -0.05 16 38 H 0.09 0.31 7.71 -51.93 -0.40 -0.09 16 39 H 0.43 2.20 8.96 -40.82 -0.37 1.83 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.24 6.10 -51.93 -0.32 0.93 16 43 H 0.04 0.55 7.95 -51.93 -0.41 0.13 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -33.99 334.45 -8.35 -42.34 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.08 Total: -3.23 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -0.32 Total: -7.11 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: -0.60 Total: -40.79 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.72 Total: -13.37 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.99 -8.35 -42.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877460785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.229 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds