Wall clock time and date at job start Tue Mar 31 2020 05:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46823 * 2 1 4 4 C 1.52995 * 109.47014 * 240.00176 * 2 1 3 5 5 C 1.50693 * 109.47389 * 64.99568 * 4 2 1 6 6 H 1.08003 * 119.99972 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00174 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00273 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99837 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47300 * 89.99434 * 9 7 5 11 11 H 1.48504 * 109.46908 * 209.99381 * 9 7 5 12 12 H 1.48499 * 109.47087 * 329.99409 * 9 7 5 13 13 C 1.52996 * 109.46760 * 119.99983 * 2 1 3 14 14 N 1.46901 * 109.47272 * 294.99639 * 13 2 1 15 15 C 1.46860 * 111.00183 * 170.00455 * 14 13 2 16 16 C 1.53136 * 109.45633 * 186.32969 * 15 14 13 17 17 C 1.52590 * 109.30777 * 301.66741 * 16 15 14 18 18 C 1.53638 * 110.26069 * 178.49743 * 17 16 15 19 19 N 1.47225 * 103.58766 * 118.91536 * 18 17 16 20 20 C 1.34082 * 108.84572 * 359.97438 * 19 18 17 21 21 O 1.21510 * 123.08765 * 180.02562 * 20 19 18 22 22 O 1.33929 * 113.81834 * 359.97438 * 20 19 18 23 23 C 1.52584 * 110.40558 * 56.40237 * 17 16 15 24 24 C 1.46851 * 111.00151 * 294.34909 * 14 13 2 25 25 H 1.08999 * 109.47088 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47107 * 299.99916 * 1 2 3 27 27 H 1.08999 * 109.47354 * 59.99926 * 1 2 3 28 28 H 1.08997 * 109.46995 * 185.00434 * 4 2 1 29 29 H 1.09003 * 109.46827 * 304.99813 * 4 2 1 30 30 H 0.96998 * 119.99813 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47012 * 175.00318 * 13 2 1 32 32 H 1.08994 * 109.47345 * 55.00295 * 13 2 1 33 33 H 1.09003 * 109.47167 * 66.32943 * 15 14 13 34 34 H 1.09007 * 109.46957 * 306.32322 * 15 14 13 35 35 H 1.09000 * 109.50043 * 61.61738 * 16 15 14 36 36 H 1.09005 * 109.49631 * 181.71823 * 16 15 14 37 37 H 1.09002 * 110.59652 * 237.44094 * 18 17 16 38 38 H 1.09003 * 110.60503 * 0.23245 * 18 17 16 39 39 H 0.96999 * 125.58063 * 180.02562 * 19 18 17 40 40 H 1.09007 * 109.49712 * 63.54618 * 23 17 16 41 41 H 1.08994 * 109.49751 * 183.64419 * 23 17 16 42 42 H 1.08999 * 109.47414 * 53.67745 * 24 14 13 43 43 H 1.09001 * 109.47679 * 293.66736 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0805 0.9745 -2.3756 7 6 1.9932 -0.4017 -3.7282 8 7 1.6456 0.2777 -4.7993 9 14 2.9636 -1.9883 -3.9027 10 1 2.0245 -3.1327 -4.0198 11 1 3.8125 -1.9181 -5.1192 12 1 3.8253 -2.1755 -2.7079 13 6 2.0399 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 1.9124 -0.7354 3.6668 16 6 1.3522 0.0178 4.8767 17 6 1.9996 1.3973 4.9562 18 6 1.4251 2.1871 6.1422 19 7 2.6002 2.4370 6.9931 20 6 3.6789 1.8910 6.4132 21 8 4.7915 1.9446 6.8985 22 8 3.4169 1.2803 5.2504 23 6 1.7805 2.1636 3.6551 24 6 2.3268 1.3409 2.4847 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.1263 -0.7995 -1.2055 29 1 1.6054 -1.7198 -1.2951 30 1 1.8929 -0.0453 -5.6799 31 1 3.1263 -0.7994 1.2056 32 1 1.6054 -1.7198 1.2951 33 1 2.9871 -0.8706 3.7885 34 1 1.4299 -1.7099 3.5901 35 1 0.2731 0.1281 4.7690 36 1 1.5724 -0.5404 5.7867 37 1 0.9906 3.1273 5.8024 38 1 0.6823 1.5931 6.6749 39 1 2.5950 2.9174 7.8358 40 1 0.7142 2.3381 3.5107 41 1 2.3028 3.1191 3.7032 42 1 2.1450 1.8725 1.5506 43 1 3.3986 1.1910 2.6148 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877460785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:42 Heat of formation + Delta-G solvation = -106.629000 kcal Electronic energy + Delta-G solvation = -23018.835699 eV Core-core repulsion = 19676.544709 eV Total energy + Delta-G solvation = -3342.290990 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.89370 -39.96774 -38.40860 -36.64947 -35.74054 -34.51655 -33.04810 -31.98367 -29.55982 -28.20559 -26.26513 -24.58629 -24.27800 -23.67980 -23.00691 -21.19754 -20.43439 -18.91671 -18.55186 -17.71319 -17.58088 -16.90649 -16.21930 -16.08698 -15.96777 -15.72360 -15.19809 -15.06148 -15.00528 -14.74242 -14.39533 -14.25735 -13.82847 -13.51675 -13.23669 -12.94883 -12.83668 -12.73965 -12.66476 -12.35197 -12.14874 -12.11626 -12.01705 -11.74720 -11.61984 -11.43551 -11.22874 -11.11151 -10.88572 -10.72429 -10.32997 -9.24364 -8.25519 -6.27136 1.35205 1.37383 1.48590 1.59301 1.73959 2.37727 2.55576 2.96526 3.09898 3.14881 3.48854 3.55608 4.02195 4.03967 4.21118 4.29568 4.41308 4.44445 4.49482 4.50809 4.55485 4.66053 4.73061 4.82769 4.87729 4.91695 4.95954 4.99857 5.07257 5.08263 5.14240 5.23135 5.43761 5.48421 5.58413 5.74623 5.75700 5.81105 6.09664 6.22151 6.25646 6.36459 6.80526 7.03803 7.36421 8.91124 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033581 B = 0.003393 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.609623 B = 8250.853954 C = 8399.407587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.068 4.068 3 H 0.050 0.950 4 C -0.008 4.008 5 C -0.515 4.515 6 H 0.037 0.963 7 C 0.002 3.998 8 N -0.953 5.953 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.252 1.252 13 C 0.068 3.932 14 N -0.525 5.525 15 C 0.050 3.950 16 C -0.106 4.106 17 C 0.087 3.913 18 C 0.079 3.921 19 N -0.718 5.718 20 C 0.637 3.363 21 O -0.585 6.585 22 O -0.341 6.341 23 C -0.108 4.108 24 C 0.049 3.951 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.025 0.975 28 H 0.008 0.992 29 H 0.018 0.982 30 H 0.264 0.736 31 H 0.016 0.984 32 H 0.081 0.919 33 H 0.015 0.985 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.123 0.877 38 H 0.130 0.870 39 H 0.445 0.555 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 1.671 26.301 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.046 4.046 5 C -0.553 4.553 6 H 0.056 0.944 7 C -0.194 4.194 8 N -0.595 5.595 9 Si 0.769 3.231 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.176 1.176 13 C -0.059 4.059 14 N -0.249 5.249 15 C -0.078 4.078 16 C -0.143 4.143 17 C 0.050 3.950 18 C -0.044 4.044 19 N -0.391 5.391 20 C 0.390 3.610 21 O -0.475 6.475 22 O -0.251 6.251 23 C -0.145 4.145 24 C -0.079 4.079 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.026 0.974 29 H 0.036 0.964 30 H 0.073 0.927 31 H 0.034 0.966 32 H 0.099 0.901 33 H 0.034 0.966 34 H 0.109 0.891 35 H 0.144 0.856 36 H 0.106 0.894 37 H 0.141 0.859 38 H 0.148 0.852 39 H 0.290 0.710 40 H 0.142 0.858 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -5.376 1.565 26.029 26.624 hybrid contribution 1.689 -0.380 -0.629 1.842 sum -3.687 1.185 25.399 25.693 Atomic orbital electron populations 1.21470 0.94311 1.00849 1.00326 1.20907 0.96998 0.98345 0.92428 0.93180 1.19583 0.95478 0.95928 0.93637 1.21442 1.34111 1.08681 0.91086 0.94430 1.25962 0.97005 1.00795 0.95632 1.70065 1.49164 1.41560 0.98673 0.85736 0.79410 0.79939 0.78022 1.19050 1.21307 1.17565 1.22085 0.96841 0.97549 0.89470 1.61983 1.57705 1.03494 1.01739 1.22146 0.98216 0.97862 0.89527 1.21896 1.02438 0.92023 0.97967 1.23259 0.75980 0.98818 0.96969 1.23193 0.88575 1.03143 0.89508 1.45952 1.07461 1.58926 1.26722 1.18889 0.85341 0.77024 0.79739 1.91016 1.24578 1.65520 1.66345 1.87336 1.30378 1.70730 1.36657 1.21882 1.04811 0.97403 0.90407 1.22114 0.95081 0.91118 0.99632 0.93638 0.90892 0.95589 0.97397 0.96399 0.92717 0.96555 0.90051 0.96628 0.89059 0.85633 0.89361 0.85858 0.85217 0.70969 0.85830 0.90186 0.90695 0.96803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.94 8.89 71.98 0.64 -3.30 16 2 C -0.07 -2.55 2.26 -10.80 -0.02 -2.57 16 3 H 0.05 1.99 6.21 -2.39 -0.01 1.98 16 4 C -0.01 -0.39 3.52 29.84 0.10 -0.28 16 5 C -0.52 -29.51 8.96 25.60 0.23 -29.28 16 6 H 0.04 2.36 7.30 -2.91 -0.02 2.34 16 7 C 0.00 0.13 5.47 84.65 0.46 0.59 16 8 N -0.95 -60.25 13.96 21.45 0.30 -59.95 16 9 Si 0.94 44.98 27.47 68.60 1.88 46.86 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 13 C 0.07 2.07 4.35 86.30 0.38 2.45 16 14 N -0.52 -12.53 4.10 -895.90 -3.67 -16.20 16 15 C 0.05 0.98 5.38 86.36 0.46 1.44 16 16 C -0.11 -1.27 4.94 30.50 0.15 -1.12 16 17 C 0.09 1.20 0.92 -10.85 -0.01 1.19 16 18 C 0.08 0.47 7.34 86.46 0.63 1.10 16 19 N -0.72 -8.59 6.41 -590.52 -3.78 -12.37 16 20 C 0.64 15.26 9.16 129.90 1.19 16.45 16 21 O -0.59 -19.78 18.04 19.64 0.35 -19.42 16 22 O -0.34 -8.15 9.87 -48.78 -0.48 -8.63 16 23 C -0.11 -1.65 4.94 30.50 0.15 -1.50 16 24 C 0.05 1.18 5.22 86.36 0.45 1.63 16 25 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.07 2.12 7.75 -2.39 -0.02 2.10 16 27 H 0.02 1.05 6.95 -2.39 -0.02 1.04 16 28 H 0.01 0.37 7.20 -2.39 -0.02 0.35 16 29 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 30 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.02 0.53 8.12 -2.38 -0.02 0.51 16 32 H 0.08 2.29 7.98 -2.39 -0.02 2.27 16 33 H 0.02 0.38 7.95 -2.39 -0.02 0.36 16 34 H 0.09 1.57 8.01 -2.38 -0.02 1.55 16 35 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.12 0.18 7.71 -2.39 -0.02 0.16 16 38 H 0.13 0.01 7.71 -2.39 -0.02 -0.01 16 39 H 0.45 3.21 8.96 -92.71 -0.83 2.38 16 40 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 2.05 6.10 -2.39 -0.01 2.03 16 43 H 0.01 0.40 7.95 -2.39 -0.02 0.38 16 Total: -1.00 -78.41 334.45 -0.47 -78.88 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: 0.11 Total: 4.04 kcal Atomic # 6 Polarization: -18.02 SS G_CDS: 4.82 Total: -13.20 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -7.16 Total: -88.52 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.13 Total: -28.05 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -78.41 -0.47 -78.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877460785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.748 kcal (2) G-P(sol) polarization free energy of solvation -78.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds