Wall clock time and date at job start Tue Mar 31 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47222 * 2 1 4 4 C 1.53003 * 109.46963 * 119.99872 * 2 1 3 5 5 C 1.50699 * 109.47303 * 294.99827 * 4 2 1 6 6 H 1.08004 * 119.99766 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00041 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00035 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00101 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47156 * 60.00425 * 9 7 5 11 11 H 1.48505 * 109.47437 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47433 * 300.00272 * 9 7 5 13 13 C 1.52998 * 109.47035 * 239.99811 * 2 1 3 14 14 N 1.46907 * 109.46842 * 65.03512 * 13 2 1 15 15 C 1.46840 * 110.99749 * 200.12325 * 14 13 2 16 16 C 1.53139 * 109.46151 * 173.68353 * 15 14 13 17 17 C 1.52584 * 109.31145 * 58.32001 * 16 15 14 18 18 C 1.53646 * 110.26202 * 181.51742 * 17 16 15 19 19 N 1.47227 * 103.58016 * 241.08919 * 18 17 16 20 20 C 1.34075 * 108.85591 * 0.02562 * 19 18 17 21 21 O 1.21511 * 123.09575 * 179.97438 * 20 19 18 22 22 O 1.33934 * 113.81377 * 359.97438 * 20 19 18 23 23 C 1.52590 * 110.40915 * 303.60504 * 17 16 15 24 24 C 1.46849 * 110.99622 * 75.77271 * 14 13 2 25 25 H 1.08997 * 109.47212 * 185.01135 * 1 2 3 26 26 H 1.09003 * 109.47131 * 305.01142 * 1 2 3 27 27 H 1.09001 * 109.47118 * 65.00653 * 1 2 3 28 28 H 1.08998 * 109.47188 * 54.99974 * 4 2 1 29 29 H 1.09003 * 109.46889 * 174.99941 * 4 2 1 30 30 H 0.97001 * 119.99620 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.46702 * 185.03162 * 13 2 1 32 32 H 1.08995 * 109.46934 * 305.03760 * 13 2 1 33 33 H 1.09006 * 109.47468 * 293.67835 * 15 14 13 34 34 H 1.08998 * 109.47509 * 53.68576 * 15 14 13 35 35 H 1.09002 * 109.49671 * 298.37202 * 16 15 14 36 36 H 1.08994 * 109.50413 * 178.27392 * 16 15 14 37 37 H 1.08991 * 110.60100 * 359.61948 * 18 17 16 38 38 H 1.09004 * 110.59851 * 122.41799 * 18 17 16 39 39 H 0.97001 * 125.57306 * 179.97438 * 19 18 17 40 40 H 1.08998 * 109.49851 * 296.44939 * 23 17 16 41 41 H 1.08998 * 109.49980 * 176.34483 * 23 17 16 42 42 H 1.09000 * 109.47451 * 306.31058 * 24 14 13 43 43 H 1.09000 * 109.47838 * 66.32093 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0571 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9924 -0.4022 3.7283 8 7 2.6755 -1.5193 3.8512 9 14 1.4976 0.5622 5.2497 10 1 0.0176 0.6686 5.3087 11 1 1.9916 -0.1384 6.4623 12 1 2.0897 1.9226 5.1877 13 6 2.0400 -0.7213 -1.2492 14 7 1.6520 0.0379 -2.4456 15 6 1.6852 -0.8126 -3.6421 16 6 1.1264 -0.0345 -4.8369 17 6 1.9521 1.2316 -5.0452 18 6 1.3864 2.0490 -6.2167 19 7 2.5001 2.0909 -7.1788 20 6 3.5401 1.4170 -6.6672 21 8 4.5987 1.2885 -7.2498 22 8 3.3050 0.8985 -5.4549 23 6 1.9667 2.0728 -3.7723 24 6 2.4984 1.2263 -2.6120 25 1 -0.3633 -1.0237 0.0898 26 1 -0.3633 0.5896 0.8417 27 1 -0.3633 0.4342 -0.9314 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7995 1.2056 30 1 2.9221 -1.8426 4.7319 31 1 3.1262 -0.8000 -1.2052 32 1 1.6049 -1.7195 -1.2954 33 1 2.7138 -1.1079 -3.8498 34 1 1.0790 -1.7024 -3.4724 35 1 0.0887 0.2360 -4.6417 36 1 1.1791 -0.6545 -5.7318 37 1 0.5220 1.5477 -6.6521 38 1 1.1209 3.0545 -5.8899 39 1 2.4838 2.5331 -8.0420 40 1 0.9543 2.4065 -3.5450 41 1 2.6122 2.9392 -3.9161 42 1 2.4819 1.8155 -1.6951 43 1 3.5212 0.9170 -2.8268 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877460786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:44 Heat of formation + Delta-G solvation = -84.909812 kcal Electronic energy + Delta-G solvation = -22935.193057 eV Core-core repulsion = 19593.843882 eV Total energy + Delta-G solvation = -3341.349175 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10713 -38.89450 -37.24585 -35.14140 -34.99136 -32.80253 -31.55499 -31.12698 -27.64021 -26.66156 -25.03106 -23.63805 -23.11183 -22.83254 -21.94568 -20.29623 -18.85753 -17.72531 -16.90174 -16.76300 -16.39442 -15.63201 -15.15573 -15.12404 -14.55489 -14.42702 -14.22990 -14.08708 -13.81653 -13.63442 -13.25375 -12.66005 -12.34942 -12.15919 -11.99373 -11.79219 -11.43091 -11.38486 -11.15631 -11.00052 -10.84670 -10.73521 -10.67848 -10.47995 -10.28729 -10.23392 -9.72226 -9.59269 -9.10447 -8.96158 -8.31161 -8.05742 -5.96113 -3.97339 2.44245 2.49988 3.19764 3.34943 3.39585 3.41641 3.73281 4.06059 4.13144 4.27191 4.49395 4.75934 4.87829 4.89800 5.00393 5.22850 5.36067 5.37766 5.39547 5.44252 5.47419 5.66749 5.77831 5.85395 5.91163 5.99960 6.11173 6.18296 6.38595 6.43236 6.54919 6.70602 7.00893 7.03245 7.13450 7.20651 7.34759 7.40845 7.71102 7.83139 7.87425 8.04219 8.48163 9.09035 9.65992 11.15416 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037026 B = 0.003168 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.046410 B = 8835.105882 C = 8879.299392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.078 4.078 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.061 3.939 14 N -0.534 5.534 15 C 0.054 3.946 16 C -0.113 4.113 17 C 0.096 3.904 18 C 0.074 3.926 19 N -0.739 5.739 20 C 0.643 3.357 21 O -0.529 6.529 22 O -0.313 6.313 23 C -0.113 4.113 24 C 0.054 3.946 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.015 0.985 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.433 0.567 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.165 6.868 -21.231 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.551 4.551 6 H 0.073 0.927 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.066 4.066 14 N -0.259 5.259 15 C -0.074 4.074 16 C -0.151 4.151 17 C 0.058 3.942 18 C -0.051 4.051 19 N -0.412 5.412 20 C 0.396 3.604 21 O -0.414 6.414 22 O -0.224 6.224 23 C -0.151 4.151 24 C -0.074 4.074 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.034 0.966 29 H 0.030 0.970 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.276 0.724 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.852 6.598 -21.002 22.779 hybrid contribution 0.497 0.437 0.394 0.770 sum -5.355 7.035 -20.609 22.425 Atomic orbital electron populations 1.21567 0.95831 1.00571 0.99881 1.21181 0.95862 0.99024 0.93612 0.92701 1.19135 0.95922 0.95532 0.90509 1.21193 1.34620 1.08271 0.90989 0.92651 1.25020 0.95355 0.95092 0.99078 1.69957 1.39058 1.21222 1.23462 0.86700 0.78872 0.80112 0.82547 1.20288 1.21405 1.20324 1.22314 0.97987 0.96914 0.89392 1.61983 1.53603 1.07611 1.02702 1.22043 0.99926 0.95819 0.89625 1.21861 0.99617 0.94382 0.99195 1.22971 0.79332 0.96679 0.95187 1.22937 0.90877 1.02293 0.89011 1.46013 1.14214 1.58393 1.22583 1.18689 0.84251 0.77124 0.80333 1.91070 1.25575 1.63742 1.61009 1.87361 1.33022 1.70388 1.31597 1.21879 1.03825 0.97332 0.92091 1.22073 0.94624 0.92550 0.98166 0.94266 0.93100 0.93788 0.96644 0.96983 0.93051 0.94935 0.91357 0.94367 0.90163 0.88444 0.90695 0.88724 0.88629 0.72448 0.88409 0.90594 0.89392 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.87 37.16 0.33 -1.90 16 2 C -0.08 -1.54 2.39 -90.62 -0.22 -1.75 16 3 H 0.05 1.10 6.69 -51.93 -0.35 0.75 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.55 16 5 C -0.51 -14.21 8.47 -34.44 -0.29 -14.50 16 6 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.02 4.39 -3.82 -0.02 1.00 16 14 N -0.53 -7.18 3.94 -234.54 -0.92 -8.10 16 15 C 0.05 0.62 5.35 -3.79 -0.02 0.60 16 16 C -0.11 -0.95 4.94 -26.87 -0.13 -1.08 16 17 C 0.10 0.84 0.92 -90.71 -0.08 0.76 16 18 C 0.07 0.41 7.34 -3.31 -0.02 0.38 16 19 N -0.74 -5.60 6.41 -64.81 -0.42 -6.02 16 20 C 0.64 8.09 9.16 53.74 0.49 8.59 16 21 O -0.53 -8.83 18.04 -19.11 -0.34 -9.17 16 22 O -0.31 -3.97 9.87 -38.24 -0.38 -4.34 16 23 C -0.11 -1.04 4.94 -26.87 -0.13 -1.17 16 24 C 0.05 0.69 5.21 -3.78 -0.02 0.67 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 1.00 7.10 -51.93 -0.37 0.64 16 27 H 0.04 0.70 7.62 -51.93 -0.40 0.31 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 32 H 0.07 1.13 7.78 -51.93 -0.40 0.73 16 33 H 0.04 0.50 7.95 -51.93 -0.41 0.09 16 34 H 0.08 0.88 7.92 -51.93 -0.41 0.47 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.33 7.71 -51.93 -0.40 -0.07 16 38 H 0.10 0.36 7.71 -51.93 -0.40 -0.04 16 39 H 0.43 2.25 8.96 -40.82 -0.37 1.88 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.20 6.64 -51.93 -0.34 0.85 16 43 H 0.04 0.55 7.95 -51.93 -0.41 0.14 16 LS Contribution 338.71 15.07 5.10 5.10 Total: -1.00 -33.60 338.71 -8.72 -42.32 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -7.14 Total: -3.73 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -0.34 Total: -6.39 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.60 Total: -40.36 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.72 Total: -13.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.60 -8.72 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877460786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.588 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds