Wall clock time and date at job start Tue Mar 31 2020 05:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.52997 * 109.47060 * 119.99880 * 2 1 3 5 5 C 1.50706 * 109.47238 * 294.99946 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47288 * 59.99994 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46819 * 299.99648 * 9 7 5 13 13 C 1.53001 * 109.47333 * 239.99881 * 2 1 3 14 14 N 1.46897 * 109.46940 * 64.99631 * 13 2 1 15 15 C 1.46658 * 110.99723 * 66.04937 * 14 13 2 16 16 C 1.53374 * 110.37481 * 184.49718 * 15 14 13 17 17 C 1.52574 * 108.37356 * 301.95308 * 16 15 14 18 18 H 1.08995 * 108.89812 * 300.88625 * 17 16 15 19 19 N 1.45509 * 112.70430 * 179.97438 * 17 16 15 20 20 C 1.33469 * 121.89057 * 212.88566 * 19 17 16 21 21 O 1.21504 * 118.38724 * 185.07662 * 20 19 17 22 22 O 1.34084 * 123.47105 * 5.79207 * 20 19 17 23 23 C 1.45695 * 118.23935 * 345.72699 * 22 20 19 24 24 C 1.52845 * 107.56610 * 42.40380 * 23 22 20 25 25 H 1.09007 * 109.43192 * 57.22403 * 24 23 22 26 26 C 1.47182 * 110.99911 * 191.45612 * 14 13 2 27 27 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 29 29 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 30 30 H 1.09001 * 109.46832 * 175.00260 * 4 2 1 31 31 H 1.09000 * 109.47611 * 55.00557 * 4 2 1 32 32 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 33 33 H 1.08995 * 109.47139 * 184.99680 * 13 2 1 34 34 H 1.08997 * 109.47230 * 305.00195 * 13 2 1 35 35 H 1.08999 * 109.32036 * 304.76969 * 15 14 13 36 36 H 1.08997 * 109.32142 * 64.40398 * 15 14 13 37 37 H 1.08995 * 109.68223 * 61.67515 * 16 15 14 38 38 H 1.08994 * 109.68023 * 182.19255 * 16 15 14 39 39 H 0.96999 * 119.33805 * 33.62485 * 19 17 16 40 40 H 1.09007 * 109.84052 * 282.88544 * 23 22 20 41 41 H 1.08998 * 109.83881 * 161.92235 * 23 22 20 42 42 H 1.09000 * 109.62512 * 294.21779 * 26 14 13 43 43 H 1.09001 * 109.62788 * 54.78693 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6772 -1.5181 3.8511 9 14 1.4984 0.5629 5.2496 10 1 0.0184 0.6683 5.3092 11 1 1.9935 -0.1371 6.4621 12 1 2.0896 1.9237 5.1870 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.3330 1.3352 -2.4893 16 6 1.8340 2.1604 -3.6820 17 6 2.0859 1.3626 -4.9579 18 1 3.1535 1.1593 -5.0422 19 7 1.6444 2.0628 -6.1545 20 6 1.1663 1.4113 -7.2168 21 8 0.9036 2.0503 -8.2163 22 8 0.9468 0.0887 -7.2359 23 6 1.5287 -0.7221 -6.1745 24 6 1.3331 0.0310 -4.8589 25 1 0.2714 0.2252 -4.7065 26 6 1.8808 -0.7506 -3.6674 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 3.1263 -0.7994 1.2056 31 1 1.6055 -1.7198 1.2952 32 1 2.9245 -1.8410 4.7318 33 1 3.1263 -0.7994 -1.2056 34 1 1.6055 -1.7198 -1.2952 35 1 2.1331 1.8788 -1.5660 36 1 3.4066 1.1755 -2.5887 37 1 0.7667 2.3532 -3.5742 38 1 2.3751 3.1055 -3.7264 39 1 1.7073 3.0301 -6.1896 40 1 2.5924 -0.8692 -6.3620 41 1 1.0238 -1.6870 -6.1270 42 1 2.9496 -0.9185 -3.7994 43 1 1.3641 -1.7072 -3.5886 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877497600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:51 Heat of formation + Delta-G solvation = -91.085959 kcal Electronic energy + Delta-G solvation = -22845.875768 eV Core-core repulsion = 19504.258775 eV Total energy + Delta-G solvation = -3341.616993 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.52668 -39.12759 -37.26126 -36.30516 -34.50066 -32.59725 -31.96552 -31.02440 -27.13341 -26.62539 -25.93546 -24.03332 -23.43927 -22.45757 -20.81267 -20.26468 -18.84509 -18.57816 -17.66449 -16.51193 -16.33090 -15.67478 -15.35662 -15.25747 -14.90015 -14.50649 -14.43943 -14.08311 -13.83504 -13.55245 -13.14716 -12.67583 -12.31032 -12.23311 -11.76817 -11.74863 -11.54174 -11.41773 -11.31183 -10.96299 -10.91262 -10.88771 -10.77812 -10.50541 -10.34475 -10.27186 -9.68840 -9.54902 -9.20814 -9.03478 -8.37554 -8.22057 -6.02689 -4.04132 2.37605 2.56319 3.12224 3.30661 3.35585 3.37626 3.69804 3.97505 4.23582 4.43830 4.47549 4.60889 4.74156 4.90630 4.95305 5.07172 5.12151 5.29764 5.33528 5.36303 5.44255 5.60638 5.63078 5.73484 5.82020 5.89290 5.98319 6.06281 6.28961 6.43372 6.49425 6.59451 6.89438 7.01664 7.11176 7.20763 7.26891 7.38245 7.62517 7.77944 7.87056 7.96911 8.40518 9.02014 9.59674 11.08748 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043791 B = 0.003088 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.253599 B = 9063.859133 C = 9349.227294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.539 5.539 15 C 0.057 3.943 16 C -0.120 4.120 17 C 0.133 3.867 18 H 0.074 0.926 19 N -0.723 5.723 20 C 0.660 3.340 21 O -0.542 6.542 22 O -0.344 6.344 23 C 0.068 3.932 24 C -0.139 4.139 25 H 0.103 0.897 26 C 0.070 3.930 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.012 0.988 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.418 0.582 40 H 0.079 0.921 41 H 0.118 0.882 42 H 0.039 0.961 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 2.963 -17.063 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.075 0.925 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.064 4.064 14 N -0.263 5.263 15 C -0.071 4.071 16 C -0.159 4.159 17 C 0.028 3.972 18 H 0.092 0.908 19 N -0.390 5.390 20 C 0.412 3.588 21 O -0.428 6.428 22 O -0.255 6.255 23 C -0.006 4.006 24 C -0.158 4.158 25 H 0.122 0.878 26 C -0.059 4.059 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.052 0.948 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.256 0.744 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.057 0.943 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.369 2.823 -17.573 17.802 hybrid contribution 0.845 0.625 1.195 1.592 sum 0.477 3.449 -16.377 16.743 Atomic orbital electron populations 1.21585 0.95674 1.00574 1.00182 1.21245 0.96024 0.99052 0.93691 0.92531 1.19118 0.95871 0.95582 0.90421 1.21182 1.34742 1.08343 0.90978 0.92631 1.25013 0.95284 0.95081 0.99100 1.69954 1.38942 1.21225 1.23538 0.86696 0.78939 0.80095 0.82498 1.20248 1.21366 1.20306 1.22317 0.97798 0.97200 0.89035 1.61671 1.59080 1.03667 1.01897 1.22077 0.95607 0.90765 0.98689 1.21835 1.03580 0.98224 0.92212 1.21122 0.98272 0.92420 0.85420 0.90837 1.45278 1.67432 1.11503 1.14757 1.17762 0.76797 0.81014 0.83191 1.91031 1.56471 1.62507 1.32826 1.86628 1.71015 1.17471 1.50353 1.23456 0.99470 0.93968 0.83728 1.22129 1.03292 0.95328 0.95074 0.87838 1.21861 0.98797 0.96700 0.88540 0.94179 0.92761 0.93959 0.96973 0.96584 0.93007 0.95051 0.91011 0.88798 0.94797 0.89926 0.90421 0.74399 0.90297 0.86360 0.94313 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 8.89 37.16 0.33 -1.86 16 2 C -0.08 -1.50 2.26 -90.62 -0.20 -1.71 16 3 H 0.06 1.05 6.24 -51.93 -0.32 0.73 16 4 C 0.03 0.67 4.45 -27.88 -0.12 0.54 16 5 C -0.51 -13.82 8.41 -34.44 -0.29 -14.11 16 6 H 0.06 1.45 7.06 -52.49 -0.37 1.08 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.06 0.94 4.36 -3.82 -0.02 0.92 16 14 N -0.54 -6.30 4.06 -234.57 -0.95 -7.25 16 15 C 0.06 0.60 5.28 -3.76 -0.02 0.58 16 16 C -0.12 -0.98 5.84 -26.76 -0.16 -1.14 16 17 C 0.13 1.05 2.80 -68.53 -0.19 0.86 16 18 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 19 N -0.72 -6.55 5.30 -59.93 -0.32 -6.87 16 20 C 0.66 8.20 8.52 53.47 0.46 8.66 16 21 O -0.54 -8.82 17.95 -19.43 -0.35 -9.17 16 22 O -0.34 -3.96 10.45 -38.96 -0.41 -4.37 16 23 C 0.07 0.51 6.69 37.08 0.25 0.76 16 24 C -0.14 -1.13 2.22 -90.73 -0.20 -1.33 16 25 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 26 C 0.07 0.62 4.95 -3.84 -0.02 0.60 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 1.06 6.95 -51.93 -0.36 0.70 16 29 H 0.04 0.67 7.75 -51.93 -0.40 0.26 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 34 H 0.07 1.06 7.98 -51.93 -0.41 0.65 16 35 H 0.09 1.14 6.16 -51.93 -0.32 0.82 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.42 3.22 8.77 -40.82 -0.36 2.86 16 40 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.09 0.73 8.02 -51.93 -0.42 0.31 16 LS Contribution 336.95 15.07 5.08 5.08 Total: -1.00 -31.83 336.95 -8.69 -40.53 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.17 Total: -2.78 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -0.29 Total: -5.76 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.53 Total: -39.63 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.76 Total: -13.54 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.83 -8.69 -40.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877497600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.561 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds