Wall clock time and date at job start Tue Mar 31 2020 05:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47121 * 2 1 4 4 C 1.53002 * 109.46846 * 239.99344 * 2 1 3 5 5 C 1.50701 * 109.46896 * 65.00527 * 4 2 1 6 6 H 1.07999 * 120.00042 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99537 * 179.72170 * 5 4 2 8 8 N 1.31505 * 120.00073 * 0.27474 * 7 5 4 9 9 Si 1.86800 * 119.99413 * 180.27455 * 7 5 4 10 10 H 1.48499 * 109.47458 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47042 * 120.00154 * 9 7 5 12 12 H 1.48500 * 109.47051 * 239.99759 * 9 7 5 13 13 C 1.53007 * 109.46785 * 119.99837 * 2 1 3 14 14 N 1.46903 * 109.46911 * 297.37804 * 13 2 1 15 15 C 1.46652 * 110.99703 * 168.28188 * 14 13 2 16 16 C 1.53362 * 110.36933 * 184.50702 * 15 14 13 17 17 C 1.52583 * 108.36592 * 301.94847 * 16 15 14 18 18 H 1.08998 * 108.89422 * 300.92125 * 17 16 15 19 19 N 1.45492 * 112.14665 * 180.32977 * 17 16 15 20 20 C 1.34246 * 121.32436 * 213.98708 * 19 17 16 21 21 O 1.21514 * 118.13805 * 184.41937 * 20 19 17 22 22 O 1.34082 * 123.72387 * 4.44214 * 20 19 17 23 23 C 1.47181 * 118.06584 * 345.85660 * 22 20 19 24 24 C 1.52851 * 106.80217 * 43.26420 * 23 22 20 25 25 H 1.08993 * 109.43661 * 56.33409 * 24 23 22 26 26 C 1.47183 * 110.99796 * 293.70977 * 14 13 2 27 27 H 1.09004 * 109.47195 * 180.82283 * 1 2 3 28 28 H 1.09003 * 109.46960 * 300.82270 * 1 2 3 29 29 H 1.09002 * 109.47155 * 60.81916 * 1 2 3 30 30 H 1.09001 * 109.47250 * 305.00354 * 4 2 1 31 31 H 1.08997 * 109.46905 * 185.00276 * 4 2 1 32 32 H 0.97010 * 119.99851 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47340 * 57.38047 * 13 2 1 34 34 H 1.08999 * 109.46594 * 177.37899 * 13 2 1 35 35 H 1.08998 * 109.32210 * 304.78485 * 15 14 13 36 36 H 1.08999 * 109.31983 * 64.23297 * 15 14 13 37 37 H 1.08999 * 109.68867 * 182.23287 * 16 15 14 38 38 H 1.09002 * 109.71938 * 61.68875 * 16 15 14 39 39 H 0.97007 * 119.33769 * 34.01000 * 19 17 16 40 40 H 1.09000 * 110.84852 * 283.63424 * 23 22 20 41 41 H 1.09003 * 109.57729 * 162.18858 * 23 22 20 42 42 H 1.08993 * 109.62674 * 294.21505 * 26 14 13 43 43 H 1.08995 * 109.62345 * 54.78857 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9740 -2.3757 7 6 1.9978 -0.3993 -3.7280 8 7 2.6808 -1.5163 -3.8507 9 14 1.5102 0.5694 -5.2489 10 1 0.7517 1.7798 -4.8429 11 1 2.7315 0.9753 -5.9897 12 1 0.6594 -0.2772 -6.1233 13 6 2.0400 -0.7213 1.2493 14 7 1.6027 0.0069 2.4479 15 6 1.8284 -0.7897 3.6583 16 6 1.2657 -0.0647 4.8871 17 6 1.9409 1.2996 4.9914 18 1 3.0175 1.1547 5.0810 19 7 1.4703 2.0580 6.1404 20 6 1.3600 3.3952 6.0963 21 8 1.0395 3.9777 7.1134 22 8 1.5830 4.1246 4.9935 23 6 2.2682 3.4782 3.8626 24 6 1.6519 2.0879 3.7089 25 1 0.5742 2.1815 3.5759 26 6 2.2455 1.3287 2.5258 27 1 -0.3634 -1.0276 0.0148 28 1 -0.3633 0.5266 0.8825 29 1 -0.3633 0.5011 -0.8973 30 1 1.6053 -1.7200 -1.2950 31 1 3.1263 -0.7997 -1.2055 32 1 2.9313 -1.8375 -4.7312 33 1 1.6388 -1.7344 1.2732 34 1 3.1290 -0.7621 1.2261 35 1 1.3345 -1.7554 3.5518 36 1 2.8986 -0.9478 3.7916 37 1 1.4743 -0.6471 5.7845 38 1 0.1892 0.0658 4.7762 39 1 1.2318 1.5881 6.9548 40 1 3.3372 3.3897 4.0559 41 1 2.1024 4.0587 2.9550 42 1 3.3187 1.2058 2.6710 43 1 2.0587 1.8814 1.6052 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877497601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:53 Heat of formation + Delta-G solvation = -91.230817 kcal Electronic energy + Delta-G solvation = -22962.054176 eV Core-core repulsion = 19620.430901 eV Total energy + Delta-G solvation = -3341.623275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.39962 -39.10265 -37.12753 -36.28163 -34.45829 -32.51368 -32.19685 -30.81463 -27.00116 -26.77681 -25.89201 -23.93469 -23.53771 -22.37111 -20.70513 -20.21272 -19.02286 -18.44453 -17.61932 -16.50741 -16.28534 -15.66908 -15.43836 -15.15850 -14.75738 -14.57594 -14.18057 -14.12967 -13.85009 -13.67183 -13.07660 -12.61140 -12.34494 -12.21790 -11.80971 -11.70955 -11.56724 -11.37245 -11.32507 -11.02107 -10.90103 -10.86632 -10.77847 -10.41306 -10.31756 -10.30774 -9.69574 -9.52256 -9.21375 -9.01683 -8.38338 -8.21941 -6.03042 -4.04288 2.37683 2.59863 3.13086 3.28475 3.36670 3.40109 3.72407 4.01182 4.23703 4.44026 4.51690 4.63642 4.75499 4.90262 4.97562 5.09572 5.17235 5.25691 5.33193 5.37332 5.48265 5.59482 5.67593 5.72278 5.80798 5.84559 5.95906 6.05508 6.29542 6.42429 6.52540 6.59577 6.90364 7.00630 7.11492 7.21433 7.25978 7.39104 7.62791 7.77712 7.89641 7.96733 8.40388 9.02340 9.59690 11.08437 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.029368 B = 0.003452 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.197762 B = 8109.198150 C = 8717.812678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.063 3.937 14 N -0.539 5.539 15 C 0.060 3.940 16 C -0.120 4.120 17 C 0.132 3.868 18 H 0.073 0.927 19 N -0.726 5.726 20 C 0.659 3.341 21 O -0.542 6.542 22 O -0.344 6.344 23 C 0.068 3.932 24 C -0.137 4.137 25 H 0.103 0.897 26 C 0.068 3.932 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.016 0.984 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.082 0.918 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.417 0.583 40 H 0.083 0.917 41 H 0.121 0.879 42 H 0.039 0.961 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.210 2.757 17.237 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.011 4.011 5 C -0.551 4.551 6 H 0.075 0.925 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.064 4.064 14 N -0.263 5.263 15 C -0.069 4.069 16 C -0.159 4.159 17 C 0.027 3.973 18 H 0.091 0.909 19 N -0.393 5.393 20 C 0.412 3.588 21 O -0.428 6.428 22 O -0.255 6.255 23 C -0.006 4.006 24 C -0.157 4.157 25 H 0.122 0.878 26 C -0.061 4.061 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.034 0.966 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.049 0.951 35 H 0.101 0.899 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.256 0.744 40 H 0.101 0.899 41 H 0.139 0.861 42 H 0.057 0.943 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.350 3.401 17.310 17.645 hybrid contribution 0.688 -0.233 -0.716 1.020 sum 0.337 3.168 16.594 16.897 Atomic orbital electron populations 1.21578 0.95636 1.00561 1.00202 1.21243 0.96069 0.98951 0.93736 0.92640 1.19125 0.95884 0.95608 0.90447 1.21255 1.34508 1.08380 0.90952 0.92508 1.25016 0.95290 0.95087 0.99130 1.69969 1.39047 1.21273 1.23335 0.86587 0.78251 0.80179 0.83297 1.19724 1.21108 1.21080 1.22318 0.97405 0.97637 0.88993 1.61659 1.59283 1.02831 1.02530 1.21997 0.98722 0.97044 0.89142 1.21833 1.01824 0.93790 0.98416 1.21109 0.98698 0.92674 0.84866 0.90887 1.45441 1.70880 1.05470 1.17526 1.17983 0.76747 0.81173 0.82901 1.91022 1.52996 1.70199 1.28604 1.86922 1.73428 1.40825 1.24298 1.23735 0.96104 0.93254 0.87486 1.22112 1.03789 0.94313 0.95465 0.87837 1.21914 0.95666 0.90976 0.97522 0.94191 0.93966 0.92738 0.96575 0.96959 0.93125 0.90952 0.95077 0.89912 0.94889 0.90570 0.89954 0.74412 0.89865 0.86133 0.94260 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.87 37.16 0.33 -1.85 16 2 C -0.08 -1.49 2.24 -90.61 -0.20 -1.69 16 3 H 0.06 1.02 6.35 -51.93 -0.33 0.69 16 4 C 0.03 0.65 4.45 -27.88 -0.12 0.52 16 5 C -0.51 -13.73 8.40 -34.44 -0.29 -14.02 16 6 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.06 0.93 4.39 -3.82 -0.02 0.92 16 14 N -0.54 -6.29 3.97 -234.63 -0.93 -7.23 16 15 C 0.06 0.55 5.44 -3.77 -0.02 0.53 16 16 C -0.12 -0.89 5.81 -26.76 -0.16 -1.04 16 17 C 0.13 1.05 2.78 -68.54 -0.19 0.85 16 18 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 19 N -0.73 -6.61 5.34 -59.72 -0.32 -6.93 16 20 C 0.66 8.44 8.53 53.82 0.46 8.90 16 21 O -0.54 -8.99 17.96 -19.44 -0.35 -9.34 16 22 O -0.34 -4.21 10.51 -38.96 -0.41 -4.62 16 23 C 0.07 0.58 6.77 37.08 0.25 0.83 16 24 C -0.14 -1.22 2.20 -90.76 -0.20 -1.42 16 25 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 26 C 0.07 0.69 4.78 -3.88 -0.02 0.68 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.04 0.66 7.70 -51.93 -0.40 0.26 16 29 H 0.05 1.06 6.93 -51.93 -0.36 0.70 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.07 1.09 7.96 -51.93 -0.41 0.67 16 34 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 35 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.42 3.14 8.78 -40.82 -0.36 2.78 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.10 1.10 6.23 -51.93 -0.32 0.78 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -31.84 337.03 -8.67 -40.51 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -7.18 Total: -2.74 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -0.27 Total: -5.35 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: -0.51 Total: -39.61 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.76 Total: -13.96 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.84 -8.67 -40.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877497601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.725 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds