Wall clock time and date at job start Tue Mar 31 2020 05:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47184 * 2 1 4 4 C 1.53001 * 109.47319 * 120.00321 * 2 1 3 5 5 C 1.50698 * 109.46976 * 294.99772 * 4 2 1 6 6 H 1.08000 * 120.00160 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99725 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00270 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99705 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47328 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47500 * 120.00216 * 9 7 5 12 12 H 1.48501 * 109.46963 * 240.00338 * 9 7 5 13 13 C 1.53001 * 109.46847 * 240.00140 * 2 1 3 14 14 N 1.46900 * 109.47284 * 65.00105 * 13 2 1 15 15 C 1.46651 * 110.99784 * 64.59912 * 14 13 2 16 16 C 1.53357 * 110.39099 * 184.48999 * 15 14 13 17 17 C 1.52673 * 108.35140 * 301.81018 * 16 15 14 18 18 H 1.09004 * 109.46969 * 299.97594 * 17 16 15 19 19 C 1.52854 * 111.88132 * 178.43781 * 17 16 15 20 20 O 1.45692 * 107.56854 * 178.84144 * 19 17 16 21 21 C 1.34083 * 118.24329 * 42.42887 * 20 19 17 22 22 O 1.21507 * 118.14446 * 166.39211 * 21 20 19 23 23 N 1.34251 * 123.72301 * 346.41640 * 21 20 19 24 24 C 1.45109 * 121.42502 * 4.39155 * 23 21 20 25 25 H 1.09001 * 108.22426 * 92.93846 * 24 23 21 26 26 C 1.47195 * 111.00064 * 190.00055 * 14 13 2 27 27 H 1.09005 * 109.47070 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46452 * 299.99491 * 1 2 3 29 29 H 1.08997 * 109.47252 * 59.99501 * 1 2 3 30 30 H 1.09005 * 109.46757 * 54.99776 * 4 2 1 31 31 H 1.08995 * 109.46983 * 174.99573 * 4 2 1 32 32 H 0.97002 * 119.99834 * 179.97438 * 8 7 5 33 33 H 1.09003 * 109.47234 * 305.00329 * 13 2 1 34 34 H 1.08996 * 109.47043 * 185.00055 * 13 2 1 35 35 H 1.08992 * 109.31725 * 304.77318 * 15 14 13 36 36 H 1.08998 * 109.31358 * 64.21101 * 15 14 13 37 37 H 1.08999 * 109.68704 * 61.52160 * 16 15 14 38 38 H 1.08997 * 109.68798 * 182.09539 * 16 15 14 39 39 H 1.09000 * 109.83710 * 298.35911 * 19 17 16 40 40 H 1.08999 * 109.84344 * 59.25734 * 19 17 16 41 41 H 0.97001 * 119.34515 * 184.37953 * 23 21 20 42 42 H 1.09002 * 109.62104 * 294.38611 * 26 14 13 43 43 H 1.08998 * 109.62380 * 54.75218 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6415 0.0570 2.4766 6 1 1.0801 0.9741 2.3757 7 6 1.9926 -0.4024 3.7283 8 7 2.6757 -1.5194 3.8511 9 14 1.4978 0.5619 5.2497 10 1 0.7415 1.7737 4.8435 11 1 0.6436 -0.2873 6.1181 12 1 2.7157 0.9666 5.9970 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4457 15 6 2.3066 1.3492 -2.4719 16 6 1.8068 2.1723 -3.6654 17 6 2.0955 1.3894 -4.9439 18 1 3.1686 1.2193 -5.0314 19 6 1.5928 2.1232 -6.1870 20 8 1.9393 1.3121 -7.3467 21 6 1.7587 -0.0143 -7.2700 22 8 1.8035 -0.6592 -8.2989 23 7 1.5306 -0.6703 -6.1212 24 6 1.3687 0.0377 -4.8649 25 1 0.3052 0.2203 -4.7111 26 6 1.9129 -0.7372 -3.6696 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.6054 -1.7199 1.2950 31 1 3.1264 -0.7996 1.2054 32 1 2.9230 -1.8424 4.7317 33 1 1.6053 -1.7198 -1.2953 34 1 3.1263 -0.7995 -1.2057 35 1 2.0837 1.8821 -1.5477 36 1 3.3848 1.2120 -2.5547 37 1 0.7339 2.3404 -3.5721 38 1 2.3278 3.1293 -3.6954 39 1 0.5112 2.2466 -6.1317 40 1 2.0730 3.0990 -6.2601 41 1 1.4725 -1.6386 -6.1301 42 1 2.9865 -0.8848 -3.7870 43 1 1.4156 -1.7049 -3.6036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877607422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:59 Heat of formation + Delta-G solvation = -113.823736 kcal Electronic energy + Delta-G solvation = -22851.667538 eV Core-core repulsion = 19509.064561 eV Total energy + Delta-G solvation = -3342.602977 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30155 -40.06717 -38.30319 -37.33551 -35.72251 -34.50889 -33.45350 -30.69023 -29.37712 -28.39620 -26.50232 -25.13221 -24.31849 -23.95492 -21.79561 -20.93070 -20.38043 -19.39341 -18.58079 -18.28282 -17.31488 -16.72023 -16.41296 -16.27871 -16.01701 -15.88787 -15.24153 -15.21689 -14.84498 -14.53550 -14.35237 -14.03764 -13.78122 -13.40198 -13.23956 -12.87758 -12.76687 -12.72181 -12.53830 -12.36511 -12.20449 -12.06296 -11.92896 -11.79949 -11.57654 -11.32141 -11.22880 -10.99460 -10.82437 -10.51655 -10.33277 -9.25664 -8.16036 -6.24518 1.40929 1.42213 1.51478 1.54269 1.65061 2.33069 2.43668 2.98265 3.18173 3.29612 3.43164 3.74326 3.91908 4.06080 4.16272 4.23710 4.29560 4.41360 4.46962 4.54005 4.58016 4.67114 4.70028 4.84949 4.89803 4.92265 4.98387 5.00503 5.03582 5.15929 5.32277 5.33729 5.52606 5.56936 5.59014 5.74041 5.84601 5.92247 6.04760 6.19414 6.33361 6.55419 6.92628 6.98701 7.44075 8.96140 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043605 B = 0.003104 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.978872 B = 9018.798178 C = 9343.648323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 H 0.059 0.941 4 C 0.031 3.969 5 C -0.524 4.524 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.958 3.042 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.282 1.282 13 C 0.076 3.924 14 N -0.530 5.530 15 C 0.045 3.955 16 C -0.090 4.090 17 C -0.137 4.137 18 H 0.081 0.919 19 C 0.066 3.934 20 O -0.359 6.359 21 C 0.661 3.339 22 O -0.588 6.588 23 N -0.710 5.710 24 C 0.139 3.861 25 H 0.097 0.903 26 C 0.055 3.945 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.071 0.929 30 H -0.011 1.011 31 H -0.016 1.016 32 H 0.261 0.739 33 H 0.070 0.930 34 H 0.019 0.981 35 H 0.080 0.920 36 H 0.027 0.973 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.143 0.857 41 H 0.424 0.576 42 H 0.035 0.965 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 8.338 -17.311 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 H 0.078 0.922 4 C -0.007 4.007 5 C -0.562 4.562 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.783 3.217 10 H -0.183 1.183 11 H -0.208 1.208 12 H -0.208 1.208 13 C -0.052 4.052 14 N -0.255 5.255 15 C -0.082 4.082 16 C -0.128 4.128 17 C -0.156 4.156 18 H 0.100 0.900 19 C -0.007 4.007 20 O -0.270 6.270 21 C 0.415 3.585 22 O -0.477 6.477 23 N -0.377 5.377 24 C 0.034 3.966 25 H 0.115 0.885 26 C -0.073 4.073 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.007 0.993 31 H 0.002 0.998 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.037 0.963 35 H 0.098 0.902 36 H 0.045 0.955 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.161 0.839 41 H 0.264 0.736 42 H 0.054 0.946 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.627 8.427 -17.871 20.089 hybrid contribution 1.046 -0.791 1.436 1.945 sum -2.581 7.636 -16.436 18.306 Atomic orbital electron populations 1.21481 0.94511 1.00378 1.00610 1.21041 0.96786 0.98628 0.92571 0.92236 1.19031 0.93981 0.94725 0.92922 1.21678 1.34046 1.08519 0.91976 0.91916 1.25933 0.95382 0.96066 1.02640 1.70104 1.40519 1.23018 1.24126 0.85499 0.77994 0.79007 0.79173 1.18332 1.20798 1.20779 1.22002 0.96892 0.97115 0.89193 1.61541 1.59471 1.03604 1.00892 1.22248 0.95781 0.89971 1.00216 1.21430 1.03819 0.98044 0.89549 1.22165 1.01150 0.95376 0.96950 0.90035 1.23856 1.02967 0.94021 0.79821 1.86589 1.80286 1.16521 1.43607 1.17976 0.75493 0.81300 0.83739 1.90992 1.58247 1.63517 1.34940 1.45195 1.74946 1.11737 1.05843 1.20999 1.01573 0.91591 0.82422 0.88523 1.22126 0.99111 0.97460 0.88619 0.94704 0.94616 0.91017 0.99265 0.99801 0.93058 0.91168 0.96271 0.90162 0.95500 0.89089 0.87943 0.88251 0.83904 0.73620 0.94635 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.82 8.89 71.98 0.64 -3.18 16 2 C -0.07 -2.62 2.23 -10.79 -0.02 -2.65 16 3 H 0.06 2.17 6.19 -2.39 -0.01 2.15 16 4 C 0.03 1.55 4.45 29.85 0.13 1.68 16 5 C -0.52 -28.43 8.41 25.60 0.22 -28.21 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 8 N -0.94 -56.14 13.29 21.45 0.28 -55.85 16 9 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.08 2.25 4.36 86.30 0.38 2.63 16 14 N -0.53 -11.56 4.08 -896.41 -3.66 -15.22 16 15 C 0.05 0.87 5.26 86.47 0.46 1.32 16 16 C -0.09 -1.02 5.57 30.61 0.17 -0.85 16 17 C -0.14 -1.68 2.13 -10.73 -0.02 -1.70 16 18 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 19 C 0.07 0.71 6.69 71.93 0.48 1.19 16 20 O -0.36 -7.45 10.45 -49.92 -0.52 -7.97 16 21 C 0.66 15.79 8.53 129.87 1.11 16.90 16 22 O -0.59 -19.20 17.96 19.96 0.36 -18.84 16 23 N -0.71 -12.22 5.35 -574.42 -3.07 -15.29 16 24 C 0.14 2.01 2.87 45.31 0.13 2.14 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 26 C 0.06 0.98 5.22 86.08 0.45 1.43 16 27 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.03 1.33 6.95 -2.39 -0.02 1.31 16 29 H 0.07 2.01 7.75 -2.39 -0.02 1.99 16 30 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 31 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.07 2.11 8.00 -2.39 -0.02 2.09 16 34 H 0.02 0.61 8.13 -2.39 -0.02 0.59 16 35 H 0.08 1.77 6.10 -2.39 -0.01 1.75 16 36 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.42 6.46 8.79 -92.71 -0.82 5.65 16 42 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 1.51 8.04 -2.39 -0.02 1.49 16 Total: -1.00 -70.38 336.94 0.17 -70.20 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 0.18 Total: 6.67 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 4.57 Total: -9.01 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -6.44 Total: -86.36 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.16 Total: -26.81 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -70.38 0.17 -70.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877607422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.620 kcal (2) G-P(sol) polarization free energy of solvation -70.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds