Wall clock time and date at job start Tue Mar 31 2020 05:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46774 * 2 1 4 4 C 1.52998 * 109.47339 * 240.00472 * 2 1 3 5 5 C 1.50700 * 109.47348 * 64.99578 * 4 2 1 6 6 H 1.08003 * 119.99438 * 0.02562 * 5 4 2 7 7 C 1.37875 * 120.00400 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99735 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00129 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47306 * 59.99878 * 9 7 5 11 11 H 1.48499 * 109.46861 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46895 * 299.99753 * 9 7 5 13 13 C 1.52998 * 109.47267 * 120.00455 * 2 1 3 14 14 N 1.46901 * 109.47240 * 184.73490 * 13 2 1 15 15 C 1.46642 * 111.00390 * 75.80009 * 14 13 2 16 16 C 1.53356 * 110.39995 * 184.48647 * 15 14 13 17 17 C 1.52666 * 108.34447 * 301.81147 * 16 15 14 18 18 H 1.09004 * 109.47783 * 299.97219 * 17 16 15 19 19 C 1.52859 * 111.87917 * 178.43743 * 17 16 15 20 20 O 1.45693 * 107.56941 * 178.85558 * 19 17 16 21 21 C 1.34085 * 118.24773 * 42.43439 * 20 19 17 22 22 O 1.21505 * 118.14347 * 166.38257 * 21 20 19 23 23 N 1.34246 * 123.71542 * 346.40885 * 21 20 19 24 24 C 1.45484 * 121.33251 * 4.34919 * 23 21 20 25 25 H 1.09003 * 108.81493 * 93.37455 * 24 23 21 26 26 C 1.47196 * 110.99791 * 201.20681 * 14 13 2 27 27 H 1.09000 * 109.46953 * 294.55946 * 1 2 3 28 28 H 1.08994 * 109.47038 * 54.56754 * 1 2 3 29 29 H 1.08998 * 109.46603 * 174.56468 * 1 2 3 30 30 H 1.09002 * 109.47185 * 304.99865 * 4 2 1 31 31 H 1.08997 * 109.47408 * 184.99743 * 4 2 1 32 32 H 0.97002 * 120.00001 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.47156 * 304.73056 * 13 2 1 34 34 H 1.09001 * 109.47544 * 64.72955 * 13 2 1 35 35 H 1.09010 * 109.31398 * 304.76853 * 15 14 13 36 36 H 1.09002 * 109.31909 * 64.19451 * 15 14 13 37 37 H 1.09000 * 109.69003 * 61.52562 * 16 15 14 38 38 H 1.09003 * 109.68964 * 182.09713 * 16 15 14 39 39 H 1.08997 * 109.84114 * 298.36947 * 19 17 16 40 40 H 1.09001 * 109.83962 * 59.34129 * 19 17 16 41 41 H 0.97000 * 119.33507 * 184.40675 * 23 21 20 42 42 H 1.08996 * 109.61885 * 294.38112 * 26 14 13 43 43 H 1.08996 * 109.62200 * 54.93914 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0806 0.9747 -2.3756 7 6 1.9924 -0.4020 -3.7284 8 7 2.6748 -1.5195 -3.8513 9 14 1.4988 0.5632 -5.2496 10 1 2.0918 1.9232 -5.1870 11 1 1.9937 -0.1368 -6.4621 12 1 0.0189 0.6707 -5.3089 13 6 2.0401 -0.7213 1.2492 14 7 3.5046 -0.6231 1.3077 15 6 3.9250 0.7150 1.7356 16 6 5.4529 0.8370 1.6849 17 6 6.0511 -0.2402 2.5863 18 1 5.6991 -0.0959 3.6078 19 6 7.5793 -0.2160 2.5657 20 8 8.0479 -1.2559 3.4722 21 6 7.4267 -2.4440 3.4501 22 8 7.9617 -3.3809 4.0090 23 7 6.2474 -2.6572 2.8452 24 6 5.5915 -1.6107 2.0762 25 1 5.8793 -1.7107 1.0296 26 6 4.0706 -1.6810 2.1605 27 1 -0.3633 0.4271 0.9347 28 1 -0.3633 0.5957 -0.8373 29 1 -0.3632 -1.0231 -0.0973 30 1 1.6055 -1.7197 -1.2953 31 1 3.1264 -0.7993 -1.2057 32 1 2.9221 -1.8424 -4.7320 33 1 1.6092 -0.2588 2.1372 34 1 1.7476 -1.7706 1.2078 35 1 3.4817 1.4605 1.0753 36 1 3.5828 0.8916 2.7553 37 1 5.7990 0.6933 0.6614 38 1 5.7546 1.8224 2.0402 39 1 7.9390 -0.4156 1.5564 40 1 7.9385 0.7568 2.9017 41 1 5.8236 -3.5263 2.9229 42 1 3.7537 -1.5280 3.1921 43 1 3.7292 -2.6551 1.8105 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877607423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:02 Heat of formation + Delta-G solvation = -90.149387 kcal Electronic energy + Delta-G solvation = -23163.878881 eV Core-core repulsion = 19822.302501 eV Total energy + Delta-G solvation = -3341.576380 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34267 -38.97708 -37.18333 -36.05174 -34.38551 -33.07095 -31.90267 -29.75165 -28.07344 -26.93893 -25.04316 -23.76961 -23.19355 -22.66887 -20.74145 -20.09844 -18.93535 -18.42883 -17.39831 -16.37708 -16.26988 -15.57506 -15.30879 -15.13980 -14.63875 -14.53646 -14.18364 -14.04665 -13.81271 -13.25839 -12.90592 -12.73023 -12.53469 -11.98078 -11.82821 -11.71223 -11.42598 -11.32646 -11.08316 -10.95916 -10.89135 -10.82859 -10.72186 -10.48851 -10.33196 -10.09936 -9.71189 -9.36471 -9.13395 -8.92848 -8.29998 -8.01766 -5.94047 -3.94682 2.46778 2.69528 3.22145 3.33731 3.39100 3.40720 3.98047 4.12338 4.25414 4.49152 4.56909 4.73848 4.90960 5.04089 5.15930 5.21676 5.30407 5.40477 5.42589 5.44739 5.56870 5.66673 5.74080 5.81911 5.89364 5.95126 5.99778 6.12896 6.19516 6.28887 6.42699 6.66751 6.89325 6.94413 7.19285 7.27548 7.35734 7.51422 7.78736 7.99625 8.00236 8.13203 8.51196 9.12863 9.67978 11.16965 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021662 B = 0.003996 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.259165 B = 7004.804381 C = 7393.586391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.056 0.944 4 C 0.037 3.963 5 C -0.515 4.515 6 H 0.051 0.949 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.068 3.932 14 N -0.526 5.526 15 C 0.058 3.942 16 C -0.105 4.105 17 C -0.140 4.140 18 H 0.087 0.913 19 C 0.067 3.933 20 O -0.345 6.345 21 C 0.661 3.339 22 O -0.542 6.542 23 N -0.723 5.723 24 C 0.132 3.868 25 H 0.093 0.907 26 C 0.057 3.943 27 H 0.028 0.972 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.008 0.992 31 H 0.032 0.968 32 H 0.258 0.742 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.027 0.973 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.419 0.581 42 H 0.035 0.965 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.381 3.921 13.416 14.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.074 0.926 4 C 0.000 4.000 5 C -0.553 4.553 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.059 4.059 14 N -0.250 5.250 15 C -0.070 4.070 16 C -0.143 4.143 17 C -0.159 4.159 18 H 0.105 0.895 19 C -0.007 4.007 20 O -0.256 6.256 21 C 0.413 3.587 22 O -0.428 6.428 23 N -0.390 5.390 24 C 0.026 3.974 25 H 0.111 0.889 26 C -0.072 4.072 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.045 0.955 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.133 0.867 41 H 0.258 0.742 42 H 0.053 0.947 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.240 3.579 13.218 14.662 hybrid contribution -1.015 0.350 -0.312 1.118 sum 4.226 3.929 12.906 14.137 Atomic orbital electron populations 1.21700 0.96384 1.01307 0.99645 1.21225 0.94181 0.99248 0.95498 0.92575 1.19037 0.97330 0.94438 0.89224 1.21270 1.34489 1.08184 0.91393 0.93084 1.24971 0.95442 0.95042 0.98844 1.69954 1.39124 1.21143 1.23261 0.86787 0.78813 0.80197 0.82920 1.20418 1.21439 1.20440 1.22260 0.84674 1.01196 0.97770 1.61416 1.10813 1.01909 1.50882 1.22094 0.94626 0.91702 0.98570 1.21500 0.95446 0.96961 1.00400 1.22115 0.95274 0.96508 1.02004 0.89512 1.23535 0.93545 0.89968 0.93604 1.86605 1.57382 1.21722 1.59941 1.17907 0.80152 0.82204 0.78394 1.91019 1.65918 1.36548 1.49315 1.45358 1.21447 1.17139 1.55093 1.21026 0.94039 0.85878 0.96434 0.88914 1.22137 0.92150 0.97267 0.95612 0.95341 0.91970 0.93486 0.97363 0.94924 0.93182 0.95936 0.91258 0.89292 0.95477 0.89560 0.90378 0.89806 0.86673 0.74216 0.94668 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.91 37.16 0.33 -1.97 16 2 C -0.08 -1.53 2.39 -90.62 -0.22 -1.74 16 3 H 0.06 1.05 6.71 -51.93 -0.35 0.70 16 4 C 0.04 0.88 4.39 -27.88 -0.12 0.76 16 5 C -0.51 -13.83 8.48 -34.44 -0.29 -14.12 16 6 H 0.05 1.34 7.06 -52.48 -0.37 0.97 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 9 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.07 1.02 4.41 -3.82 -0.02 1.01 16 14 N -0.53 -7.25 3.90 -234.69 -0.92 -8.17 16 15 C 0.06 0.68 5.27 -3.78 -0.02 0.66 16 16 C -0.10 -0.98 5.56 -26.72 -0.15 -1.13 16 17 C -0.14 -1.29 2.13 -90.71 -0.19 -1.49 16 18 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 19 C 0.07 0.60 6.69 37.09 0.25 0.84 16 20 O -0.35 -4.41 10.44 -38.97 -0.41 -4.82 16 21 C 0.66 9.26 8.53 53.82 0.46 9.72 16 22 O -0.54 -9.58 17.96 -19.43 -0.35 -9.93 16 23 N -0.72 -8.13 5.36 -59.77 -0.32 -8.45 16 24 C 0.13 1.42 2.85 -68.59 -0.20 1.22 16 25 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 26 C 0.06 0.66 5.18 -3.92 -0.02 0.64 16 27 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 1.17 7.12 -51.93 -0.37 0.80 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.03 0.84 7.61 -51.93 -0.40 0.45 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 34 H 0.07 1.06 7.79 -51.93 -0.40 0.65 16 35 H 0.09 1.15 6.66 -51.92 -0.35 0.80 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.42 4.20 8.79 -40.82 -0.36 3.84 16 42 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 1.00 7.95 -51.93 -0.41 0.58 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -31.99 337.65 -8.68 -40.67 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.21 Total: -0.93 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -0.28 Total: -4.11 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: -0.50 Total: -42.13 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.76 Total: -14.75 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.99 -8.68 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877607423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.479 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds