Wall clock time and date at job start Tue Mar 31 2020 05:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 109.46873 * 2 1 4 4 C 1.50703 * 109.46630 * 240.00237 * 2 1 3 5 5 H 1.08003 * 119.99796 * 245.38831 * 4 2 1 6 6 C 1.37875 * 120.00286 * 65.39469 * 4 2 1 7 7 N 1.31513 * 120.00147 * 185.16739 * 6 4 2 8 8 Si 1.86800 * 119.99729 * 5.17376 * 6 4 2 9 9 H 1.48498 * 109.47119 * 269.99483 * 8 6 4 10 10 H 1.48498 * 109.47590 * 30.00166 * 8 6 4 11 11 H 1.48503 * 109.47021 * 149.99965 * 8 6 4 12 12 N 1.46496 * 109.47242 * 120.00204 * 2 1 3 13 13 N 1.40101 * 119.99861 * 269.99853 * 12 2 1 14 14 C 1.28015 * 119.99740 * 185.11561 * 13 12 2 15 15 C 1.51514 * 121.22336 * 4.81938 * 14 13 12 16 16 C 1.52907 * 108.32254 * 228.43520 * 15 14 13 17 17 O 1.42896 * 109.37854 * 307.92548 * 16 15 14 18 18 C 1.42756 * 114.57710 * 64.59631 * 17 16 15 19 19 C 1.53063 * 109.66842 * 55.51196 * 18 17 16 20 20 C 1.53110 * 109.19794 * 63.41401 * 19 18 17 21 21 O 1.42906 * 109.41060 * 57.46090 * 20 19 18 22 22 C 1.42913 * 114.09633 * 298.78144 * 21 20 19 23 23 C 1.53088 * 109.62781 * 175.42098 * 18 17 16 24 24 C 1.51520 * 121.21960 * 185.09318 * 14 13 12 25 25 H 1.09000 * 109.46989 * 174.96683 * 1 2 3 26 26 H 1.09003 * 109.47058 * 294.96974 * 1 2 3 27 27 H 1.09003 * 109.47323 * 54.97192 * 1 2 3 28 28 H 0.96997 * 120.00328 * 355.00600 * 7 6 4 29 29 H 0.97002 * 120.00113 * 89.99548 * 12 2 1 30 30 H 1.08998 * 109.73758 * 348.15297 * 15 14 13 31 31 H 1.08993 * 109.74157 * 108.85614 * 15 14 13 32 32 H 1.08999 * 109.57461 * 187.87806 * 16 15 14 33 33 H 1.09002 * 109.33478 * 67.82381 * 16 15 14 34 34 H 1.08998 * 109.52328 * 183.32921 * 19 18 17 35 35 H 1.09004 * 109.52026 * 303.49983 * 19 18 17 36 36 H 1.08997 * 109.47706 * 297.48283 * 20 19 18 37 37 H 1.08999 * 109.47959 * 177.44412 * 20 19 18 38 38 H 1.09002 * 109.47615 * 301.26020 * 22 21 20 39 39 H 1.08993 * 109.49906 * 181.22481 * 22 21 20 40 40 H 1.09000 * 109.51653 * 56.49380 * 23 18 17 41 41 H 1.08996 * 109.51788 * 176.61248 * 23 18 17 42 42 H 1.08996 * 109.72817 * 251.39173 * 24 14 13 43 43 H 1.09004 * 109.72948 * 12.07260 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.5795 -1.6365 -1.1339 6 6 1.7933 -0.1780 -2.4797 7 7 2.1414 -0.8470 -3.5572 8 14 0.9752 1.4935 -2.6417 9 1 -0.4980 1.3192 -2.7074 10 1 1.3228 2.3308 -1.4656 11 1 1.4506 2.1592 -3.8811 12 7 2.0184 -0.6906 1.1961 13 7 2.2519 0.0299 2.3747 14 6 2.7706 -0.5534 3.3893 15 6 3.2417 -1.9914 3.3127 16 6 2.6813 -2.7458 4.5190 17 8 3.0022 -2.0327 5.7150 18 6 2.3932 -0.7459 5.8206 19 6 0.8753 -0.8810 5.6776 20 6 0.3331 -1.7207 6.8374 21 8 0.6948 -1.1083 8.0769 22 6 2.1045 -1.0028 8.2862 23 6 2.7183 -0.1335 7.1854 24 6 2.9303 0.1669 4.7128 25 1 -0.3633 -1.0237 -0.0902 26 1 -0.3633 0.4338 0.9316 27 1 -0.3634 0.5899 -0.8415 28 1 2.6308 -1.6803 -3.4738 29 1 2.1800 -1.6468 1.1721 30 1 2.8788 -2.4492 2.3925 31 1 4.3309 -2.0237 3.3359 32 1 3.1189 -3.7432 4.5614 33 1 1.5986 -2.8266 4.4229 34 1 0.4179 0.1081 5.6993 35 1 0.6406 -1.3709 4.7326 36 1 0.7579 -2.7234 6.7898 37 1 -0.7528 -1.7820 6.7653 38 1 2.5517 -1.9964 8.2565 39 1 2.2950 -0.5473 9.2578 40 1 3.7995 -0.0895 7.3166 41 1 2.3034 0.8729 7.2412 42 1 3.9842 0.3805 4.8906 43 1 2.3634 1.0978 4.6958 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884441289.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:16 Heat of formation + Delta-G solvation = -53.936062 kcal Electronic energy + Delta-G solvation = -23278.360779 eV Core-core repulsion = 19938.354726 eV Total energy + Delta-G solvation = -3340.006053 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.69804 -38.10605 -36.62445 -34.43154 -33.48860 -32.04335 -31.33224 -30.26685 -29.19045 -26.85702 -24.72129 -24.12050 -23.44858 -23.13023 -20.33868 -19.89844 -18.78994 -17.62270 -16.92223 -16.48357 -16.15806 -15.80207 -15.27925 -14.97013 -14.72984 -14.31419 -14.16983 -13.78917 -13.32959 -12.87813 -12.79278 -12.62268 -12.55724 -12.35346 -12.07489 -11.85741 -11.71316 -11.59271 -11.48095 -11.20558 -10.76677 -10.59465 -10.57339 -10.38199 -10.04001 -9.84715 -9.79403 -9.46784 -9.31388 -8.82962 -8.56372 -7.12778 -6.53514 -4.24687 2.73193 3.31804 3.39638 3.53506 3.54347 3.68328 3.75015 4.38162 4.50390 4.60425 4.66732 4.79461 4.85452 5.07015 5.08261 5.16689 5.19804 5.19876 5.24793 5.44205 5.48941 5.55543 5.56105 5.64162 5.72463 5.78723 5.84032 5.91303 6.04073 6.07605 6.25959 6.32976 6.50877 6.63019 6.73895 7.02493 7.03278 7.14734 7.36653 7.84516 8.01344 8.25667 8.78019 9.23615 9.46297 10.83155 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033231 B = 0.003777 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.384039 B = 7410.710827 C = 7648.941165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.271 3.729 3 H 0.038 0.962 4 C -0.607 4.607 5 H 0.058 0.942 6 C 0.034 3.966 7 N -0.907 5.907 8 Si 1.056 2.944 9 H -0.281 1.281 10 H -0.277 1.277 11 H -0.288 1.288 12 N -0.633 5.633 13 N -0.208 5.208 14 C -0.003 4.003 15 C -0.139 4.139 16 C 0.068 3.932 17 O -0.371 6.371 18 C 0.125 3.875 19 C -0.180 4.180 20 C 0.066 3.934 21 O -0.385 6.385 22 C 0.063 3.937 23 C -0.139 4.139 24 C -0.065 4.065 25 H 0.047 0.953 26 H 0.031 0.969 27 H 0.047 0.953 28 H 0.268 0.732 29 H 0.371 0.629 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 -1.137 21.935 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.167 3.833 3 H 0.056 0.944 4 C -0.646 4.646 5 H 0.076 0.924 6 C -0.172 4.172 7 N -0.541 5.541 8 Si 0.885 3.115 9 H -0.208 1.208 10 H -0.202 1.202 11 H -0.214 1.214 12 N -0.371 5.371 13 N -0.017 5.017 14 C -0.197 4.197 15 C -0.179 4.179 16 C -0.009 4.009 17 O -0.290 6.290 18 C 0.085 3.915 19 C -0.218 4.218 20 C -0.011 4.011 21 O -0.304 6.304 22 C -0.013 4.013 23 C -0.177 4.177 24 C -0.104 4.104 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.210 0.790 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.100 0.900 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.207 0.929 20.568 20.624 hybrid contribution 1.059 -2.399 0.467 2.664 sum -0.148 -1.469 21.035 21.087 Atomic orbital electron populations 1.22516 0.99975 1.00696 0.98751 1.18909 0.89333 0.94084 0.80985 0.94391 1.22213 1.40501 1.10686 0.91175 0.92352 1.25730 0.96316 1.03609 0.91505 1.70822 1.36351 1.16731 1.30157 0.83853 0.76369 0.75394 0.75909 1.20815 1.20246 1.21439 1.48614 1.73964 1.07458 1.07062 1.73449 1.07838 1.26428 0.93952 1.24078 1.05897 0.94531 0.95187 1.21552 1.02125 0.95025 0.99246 1.22474 0.99542 0.94903 0.84009 1.87825 1.71623 1.29513 1.40041 1.21387 0.91466 0.83990 0.94693 1.22757 0.96253 1.02761 1.00006 1.22506 1.00020 0.95397 0.83176 1.87902 1.22914 1.81619 1.37960 1.22528 0.81337 0.99539 0.97929 1.22184 1.02486 0.99930 0.93087 1.20919 1.02212 0.97941 0.89356 0.93389 0.95013 0.93386 0.92199 0.79024 0.90609 0.89969 0.88767 0.92866 0.89878 0.90057 0.92835 0.89057 0.92375 0.89006 0.89852 0.89532 0.90046 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.56 9.11 37.16 0.34 -3.22 16 2 C 0.27 6.59 2.81 -69.08 -0.19 6.39 16 3 H 0.04 0.98 6.64 -51.93 -0.35 0.63 16 4 C -0.61 -16.80 9.10 -34.44 -0.31 -17.11 16 5 H 0.06 1.72 8.00 -52.48 -0.42 1.30 16 6 C 0.03 0.96 5.43 -17.82 -0.10 0.86 16 7 N -0.91 -27.43 13.70 55.43 0.76 -26.68 16 8 Si 1.06 25.23 25.29 -169.99 -4.30 20.93 16 9 H -0.28 -6.35 6.81 56.52 0.38 -5.97 16 10 H -0.28 -6.26 6.36 56.52 0.36 -5.90 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.63 -13.62 5.98 -5.88 -0.04 -13.66 16 13 N -0.21 -4.04 11.44 35.99 0.41 -3.62 16 14 C 0.00 -0.04 5.81 -78.11 -0.45 -0.50 16 15 C -0.14 -1.94 6.11 -27.53 -0.17 -2.10 16 16 C 0.07 0.79 6.52 37.11 0.24 1.03 16 17 O -0.37 -4.41 9.20 -35.23 -0.32 -4.74 16 18 C 0.13 1.40 0.68 -90.41 -0.06 1.33 16 19 C -0.18 -2.03 4.33 -26.64 -0.12 -2.15 16 20 C 0.07 0.69 6.70 37.21 0.25 0.94 16 21 O -0.39 -4.35 10.76 -35.23 -0.38 -4.73 16 22 C 0.06 0.58 6.70 37.21 0.25 0.83 16 23 C -0.14 -1.28 5.14 -26.63 -0.14 -1.42 16 24 C -0.06 -0.82 5.12 -27.34 -0.14 -0.96 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 1.06 4.40 -51.93 -0.23 0.83 16 28 H 0.27 8.06 8.72 -40.82 -0.36 7.70 16 29 H 0.37 7.64 6.13 -182.60 -1.12 6.52 16 30 H 0.08 1.13 5.65 -51.93 -0.29 0.84 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.61 6.08 -51.93 -0.32 0.30 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.02 5.72 -51.93 -0.30 0.72 16 36 H 0.05 0.55 7.84 -51.93 -0.41 0.14 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -30.59 326.77 -7.24 -37.83 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -7.69 Total: 5.81 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -0.60 Total: -16.06 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 1.14 Total: -43.96 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.70 Total: -9.47 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -4.30 Total: 20.93 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.59 -7.24 -37.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884441289.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.110 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds